M
Mark Gerstein
Researcher at Yale University
Publications - 802
Citations - 172183
Mark Gerstein is an academic researcher from Yale University. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 168, co-authored 751 publications receiving 149578 citations. Previous affiliations of Mark Gerstein include Rutgers University & Structural Genomics Consortium.
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MolMovDB: analysis and visualization of conformational change and structural flexibility
TL;DR: The Database of Macromolecular Movements (MolMovDB), a collection of data and software pertaining to flexibility in protein and RNA structures, has been greatly expanded and enhanced to incorporate new structures and to improve the quality of data.
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Extensive In Vivo Metabolite-Protein Interactions Revealed by Large-Scale Systematic Analyses
TL;DR: A mass spectrometry assay is developed for the large-scale identification of in vivo protein-hydrophobic small metabolite interactions in yeast and compounds that bind ergosterol biosynthetic proteins and protein kinases are analyzed.
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Comparative analysis of processed pseudogenes in the mouse and human genomes.
TL;DR: This work has systematically identified approximately 5000 processed pseudogenes in the mouse genome, and estimated that approximately 60% are lineage specific, created after the mouse and human diverged.
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Transcriptome and epigenome landscape of human cortical development modeled in organoids
Anahita Amiri,Gianfilippo Coppola,Soraya Scuderi,Feinan Wu,Tanmoy Roychowdhury,Fuchen Liu,Sirisha Pochareddy,Yurae Shin,Yurae Shin,Alexias Safi,Lingyun Song,Ying Zhu,André M. M. Sousa,Mark Gerstein,Gregory E. Crawford,Nenad Sestan,Alexej Abyzov,Flora M. Vaccarino +17 more
TL;DR: It is demonstrated that organoids from human pluripotent cells model cerebral cortical development on the molecular level before 16 weeks postconception, and validated hiPSC-derived cortical organoids as a suitable model system for studying gene regulation in human embryonic brain development, evolution, and disease.
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Interrelating Different Types of Genomic Data, from Proteome to Secretome: 'Oming in on Function
TL;DR: The term "translatome" is suggested to describe the members of the proteome weighted by their abundance, and the "functome" to describe all the functions carried out by these in the cellular contents of the genome.