V
Vasileios Stathias
Researcher at University of Miami
Publications - 34
Citations - 1679
Vasileios Stathias is an academic researcher from University of Miami. The author has contributed to research in topics: Biology & Ontology (information science). The author has an hindex of 15, co-authored 30 publications receiving 883 citations. Previous affiliations of Vasileios Stathias include Icahn School of Medicine at Mount Sinai & Democritus University of Thrace.
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Journal ArticleDOI
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
Alexandra B Keenan,Sherry L. Jenkins,Kathleen M. Jagodnik,Simon Koplev,Edward He,Denis Torre,Zichen Wang,Anders B. Dohlman,Moshe C. Silverstein,Alexander Lachmann,Maxim V. Kuleshov,Avi Ma'ayan,Vasileios Stathias,Raymond Terryn,Daniel J. Cooper,Michele Forlin,Amar Koleti,Dusica Vidovic,Caty Chung,Stephan C. Schürer,Jouzas Vasiliauskas,Marcin Pilarczyk,Behrouz Shamsaei,Mehdi Fazel,Yan Ren,Wen Niu,Nicholas A. Clark,Shana White,Naim Al Mahi,Lixia Zhang,Michal Kouril,John F. Reichard,Siva Sivaganesan,Mario Medvedovic,Jaroslaw Meller,Rick J. Koch,Marc R. Birtwistle,Ravi Iyengar,Eric A. Sobie,Evren U. Azeloglu,Julia A. Kaye,Jeannette Osterloh,Kelly Haston,Jaslin Kalra,Steve Finkbiener,Jonathan Z. Li,Pamela Milani,Miriam Adam,Renan Escalante-Chong,Karen Sachs,Alexander LeNail,Divya Ramamoorthy,Ernest Fraenkel,Gavin Daigle,Uzma Hussain,Alyssa Coye,Jeffrey D. Rothstein,Dhruv Sareen,Loren Ornelas,Maria G. Banuelos,Berhan Mandefro,Ritchie Ho,Clive N. Svendsen,Ryan G. Lim,Jennifer Stocksdale,Malcolm Casale,Terri G. Thompson,Jie Wu,Leslie M. Thompson,Victoria Dardov,Vidya Venkatraman,Andrea Matlock,Jennifer E. Van Eyk,Jacob D. Jaffe,Malvina Papanastasiou,Aravind Subramanian,Todd R. Golub,Sean D. Erickson,Mohammad Fallahi-Sichani,Marc Hafner,Nathanael S. Gray,Jia-Ren Lin,Caitlin E. Mills,Jeremy L. Muhlich,Mario Niepel,Caroline E. Shamu,Elizabeth H. Williams,David Wrobel,Peter K. Sorger,Laura M. Heiser,Joe W. Gray,James E. Korkola,Gordon B. Mills,Mark A. LaBarge,Mark A. LaBarge,Heidi S. Feiler,Mark A. Dane,Elmar Bucher,Michel Nederlof,Damir Sudar,Sean M. Gross,David Kilburn,Rebecca Smith,Kaylyn Devlin,Ron Margolis,Leslie Derr,Albert Lee,Ajay Pillai +107 more
TL;DR: The LINCS program focuses on cellular physiology shared among tissues and cell types relevant to an array of diseases, including cancer, heart disease, and neurodegenerative disorders.
Journal ArticleDOI
Proteogenomic and metabolomic characterization of human glioblastoma
Liang-Bo Wang,Alla Karpova,Marina A. Gritsenko,Jennifer E. Kyle,Song Cao,Yize Li,Dmitry Rykunov,Antonio Colaprico,Antonio Colaprico,Joseph H. Rothstein,Runyu Hong,Vasileios Stathias,MacIntosh Cornwell,Francesca Petralia,Yige Wu,Boris Reva,Karsten Krug,Pietro Pugliese,Emily Kawaler,Lindsey K. Olsen,Wen-Wei Liang,Xiaoyu Song,Yongchao Dou,Michael C. Wendl,Wagma Caravan,Wenke Liu,Daniel Cui Zhou,Jiayi Ji,Chia-Feng Tsai,Vladislav A. Petyuk,Jamie Moon,Weiping Ma,Rosalie K. Chu,Karl K. Weitz,Ronald J. Moore,Matthew E. Monroe,Rui Zhao,Xiaolu Yang,Xiaolu Yang,Seungyeul Yoo,Azra Krek,Alexis Demopoulos,Houxiang Zhu,Matthew A. Wyczalkowski,Joshua F. McMichael,Brittany Henderson,Caleb M. Lindgren,Hannah Boekweg,Shuangjia Lu,Jessika Baral,Lijun Yao,Kelly L. Stratton,Lisa M. Bramer,Erika M. Zink,Sneha P. Couvillion,Kent J. Bloodsworth,Shankha Satpathy,Weiva Sieh,Simina M. Boca,Stephan C. Schürer,Feng Chen,Maciej Wiznerowicz,Maciej Wiznerowicz,Karen A. Ketchum,Emily S. Boja,Christopher R. Kinsinger,Ana I. Robles,Tara Hiltke,Mathangi Thiagarajan,Alexey I. Nesvizhskii,Bing Zhang,D. R. Mani,Michele Ceccarelli,Xi Chen,Xi Chen,Sandra Cottingham,Qing Kay Li,Albert H. Kim,David Fenyö,Kelly V. Ruggles,Henry Rodriguez,Mehdi Mesri,Samuel H. Payne,Adam C. Resnick,Pei Wang,Richard D. Smith,Antonio Iavarone,Milan G. Chheda,Jill S. Barnholtz-Sloan,Karin D. Rodland,Karin D. Rodland,Tao Liu,Li Ding,Anupriya Agarwal,Mitual Amin,Eunkyung An,Matthew L. Anderson,David W. Andrews,Thomas L. Bauer,Chet Birger,Michael J. Birrer,Lili Blumenberg,William Bocik,Uma Borate,Melissa Borucki,Meghan C. Burke,Shuang Cai,Anna Calinawan,Steven A. Carr,Sandra Cerda,Daniel W. Chan,Alyssa Charamut,Lin Chen,David Chesla,Arul M. Chinnaiyan,Shrabanti Chowdhury,Marcin Cieślik,David J. Clark,Houston Culpepper,Tomasz Czernicki,Fulvio D'Angelo,Jacob J. Day,Stephanie De Young,Emek Demir,Saravana M. Dhanasekaran,Rajiv Dhir,Marcin J. Domagalski,Brian J. Druker,Elizabeth R. Duffy,Maureen Dyer,Nathan Edwards,Robert Edwards,Kimberly Elburn,Matthew J. Ellis,Jennifer M. Eschbacher,Alicia Francis,Stacey Gabriel,Nikolay Gabrovski,Luciano Garofano,Gad Getz,Michael A. Gillette,Andrew K. Godwin,Denis A. Golbin,Ziad Hanhan,Linda Hannick,Pushpa Hariharan,Barbara Hindenach,Katherine A. Hoadley,Galen Hostetter,Chen Huang,Eric J. Jaehnig,Scott D. Jewell,Nan Ji,Corbin D. Jones,Alcida Karz,Wojciech Kaspera,Lyndon Kim,Ramani B. Kothadia,Chandan Kumar-Sinha,Jonathan T. Lei,Felipe D. Leprevost,Kai Li,Yuxing Liao,Jena Lilly,Hongwei Liu,Jan Lubinski,Rashna Madan,William W. Maggio,Ewa P. Malc,Anna Malovannaya,Sailaja Mareedu,Sanford P. Markey,Annette Marrero-Oliveras,Nina Martinez,Nicollette Maunganidze,Jason E. McDermott,Peter B. McGarvey,John McGee,Piotr A. Mieczkowski,Simona Migliozzi,Francesmary Modugno,Rebecca I. Montgomery,Chelsea J. Newton,Gilbert S. Omenn,Umut Ozbek,Oxana Paklina,Amanda G. Paulovich,Amy M. Perou,Alexander R. Pico,Paul D. Piehowski,Dimitris G. Placantonakis,Larisa Polonskaya,Olga Potapova,Barbara Pruetz,Liqun Qi,Shakti Ramkissoon,Adam C. Resnick,Shannon Richey,Gregory J. Riggins,Karna Robinson,Nancy Roche,Daniel C. Rohrer,Brian R. Rood,Larissa Rossell,Sara R. Savage,Eric E. Schadt,Yan Shi,Zhiao Shi,Yvonne Shutack,Shilpi Singh,Tara Skelly,Lori J. Sokoll,Jakub Stawicki,Stephen E. Stein,James Suh,Wojciech Szopa,Dave Tabor,Donghui Tan,Darlene Tansil,Ratna R. Thangudu,Cristina E. Tognon,Elie Traer,Shirley Tsang,Jeffrey W. Tyner,Ki Sung Um,Dana R. Valley,Suhas Vasaikar,Negin Vatanian,Uma Velvulou,Michael Vernon,Weiqing Wan,Junmei Wang,Alex Webster,Bo Wen,Jeffrey R. Whiteaker,George D. Wilson,Yuriy Zakhartsev,Robert Zelt,Hui Zhang,Liwei Zhang,Zhen Zhang,Grace Zhao,Jun Zhu +242 more
TL;DR: This article identified key phosphorylation events (e.g., phosphorylated PTPN11 and PLCG1) as potential switches mediating oncogenic pathway activation, as well as potential targets for EGFR-, TP53-, and RB1-altered tumors.
Journal ArticleDOI
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer
Francesca Petralia,Nicole Tignor,Boris Reva,Mateusz Koptyra,Shrabanti Chowdhury,Dmitry Rykunov,Azra Krek,Weiping Ma,Yuankun Zhu,Jiayi Ji,Anna Calinawan,Jeffrey R. Whiteaker,Antonio Colaprico,Vasileios Stathias,Tatiana Omelchenko,Xiaoyu Song,Pichai Raman,Yiran Guo,Miguel A. Brown,Richard G. Ivey,John Szpyt,Sanjukta Guha Thakurta,Marina A. Gritsenko,Karl K. Weitz,Gonzalo Lopez,Selim Kalayci,Zeynep H. Gümüş,Seungyeul Yoo,Felipe da Veiga Leprevost,Hui Yin Chang,Karsten Krug,Lizabeth Katsnelson,Ying Wang,Jacob J. Kennedy,Uliana J. Voytovich,Lei Zhao,Krutika S. Gaonkar,Brian Ennis,Bo Zhang,Valerie Baubet,Lamiya Tauhid,Jena Lilly,Jennifer Mason,Bailey Farrow,Nathan Young,Sarah Leary,Sarah Leary,Sarah Leary,Jamie Moon,Vladislav A. Petyuk,Javad Nazarian,Javad Nazarian,Nithin D. Adappa,James N. Palmer,Robert Lober,Samuel Rivero-Hinojosa,Liang-Bo Wang,Joshua M. Wang,Matilda Broberg,Rosalie K. Chu,Ronald J. Moore,Matthew E. Monroe,Rui Zhao,Richard D. Smith,Jun Zhu,Ana I. Robles,Mehdi Mesri,Emily S. Boja,Tara Hiltke,Henry Rodriguez,Bing Zhang,Eric E. Schadt,D. R. Mani,Li Ding,Antonio Iavarone,Maciej Wiznerowicz,Maciej Wiznerowicz,Stephan C. Schürer,Xi Chen,Allison Heath,Jo Lynne Rokita,Alexey I. Nesvizhskii,David Fenyö,Karin D. Rodland,Karin D. Rodland,Tao Liu,Steven P. Gygi,Amanda G. Paulovich,Adam C. Resnick,Phillip B. Storm,Brian R. Rood,Pei Wang,Alicia Francis,Allison M. Morgan,Angela Waanders,Angela N. Viaene,Anna Maria Buccoliero,Arul M. Chinnaiyan,Carina A. Leonard,Cassie Kline,Chiara Caporalini,Christopher R. Kinsinger,Chunde Li,David E. Kram,Derek Hanson,Elizabeth Appert,Emily Kawaler,Eric H. Raabe,Eric M. Jackson,Jeffrey P. Greenfield,Gabrielle S. Stone,Gad Getz,Gerald A. Grant,Guo Ci Teo,Ian F. Pollack,Jason E. Cain,Jessica B. Foster,Joanna J. Phillips,July E. Palma,Karen A. Ketchum,Kelly V. Ruggles,Lili Blumenberg,MacIntosh Cornwell,Mahdi Sarmady,Marcin J. Domagalski,Marcin Cieślik,Mariarita Santi,Marilyn M. Li,Matthew J. Ellis,Matthew A. Wyczalkowski,Meghan Connors,Mirko Scagnet,Nalin Gupta,Nathan Edwards,Nicholas A Vitanza,Olena Morozova Vaske,Oren J. Becher,Peter B. McGarvey,Ron Firestein,Sabine Mueller,Samuel G. Winebrake,Saravana M. Dhanasekaran,Shuang Cai,Sonia Partap,Tatiana Patton,Toan Le,Travis D. Lorentzen,Wenke Liu,William Bocik +148 more
TL;DR: This is the first large-scale proteogenomics analysis across traditional histological boundaries to uncover foundational pediatric brain tumor biology and inform rational treatment selection.
Journal ArticleDOI
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.
Amar Koleti,Amar Koleti,Raymond Terryn,Raymond Terryn,Vasileios Stathias,Vasileios Stathias,Caty Chung,Caty Chung,Daniel J. Cooper,Daniel J. Cooper,John Paul Turner,John Paul Turner,Dusica Vidovic,Dusica Vidovic,Michele Forlin,Michele Forlin,Tanya T. Kelley,Tanya T. Kelley,Alessandro D'Urso,Alessandro D'Urso,Bryce K. Allen,Bryce K. Allen,Denis Torre,Kathleen M. Jagodnik,Lily Wang,Sherry L. Jenkins,Christopher C. Mader,Christopher C. Mader,Wen Niu,Wen Niu,Mehdi Fazel,Mehdi Fazel,Naim Al Mahi,Naim Al Mahi,Marcin Pilarczyk,Marcin Pilarczyk,Nicholas A. Clark,Nicholas A. Clark,Behrouz Shamsaei,Behrouz Shamsaei,Jarek Meller,Jarek Meller,Juozas Vasiliauskas,Juozas Vasiliauskas,John F. Reichard,John F. Reichard,Mario Medvedovic,Mario Medvedovic,Avi Ma'ayan,Ajay Pillai,Stephan C. Schürer,Stephan C. Schürer +51 more
TL;DR: TheLINCS Data Portal (LDP) is described, a unified web interface to access datasets generated by the LINCS DSGCs, and its underlying database, LINCS Data Registry (LDR).
Journal ArticleDOI
DrugCentral 2018: an update
Oleg Ursu,Jayme Holmes,Cristian Bologa,Jeremy J. Yang,Stephen L. Mathias,Vasileios Stathias,Dac-Trung Nguyen,Stephan C. Schürer,Tudor I. Oprea +8 more
TL;DR: The following new data sources have been included: Food and Drug Administration (FDA) Adverse Event Reporting System (FAERS), FDA Orange Book information, L1000 gene perturbation profile distance/similarity matrices and estimated protonation constants.