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Xiaohan Yang
Researcher at Oak Ridge National Laboratory
Publications - 151
Citations - 8806
Xiaohan Yang is an academic researcher from Oak Ridge National Laboratory. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 36, co-authored 122 publications receiving 7296 citations. Previous affiliations of Xiaohan Yang include Battelle Memorial Institute & University of Tennessee.
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Journal ArticleDOI
Genome sequencing and analysis of the model grass Brachypodium distachyon
John P. Vogel,David F. Garvin,Todd C. Mockler,Jeremy Schmutz,Daniel S. Rokhsar,Michael W. Bevan,Kerrie Barry,Susan Lucas,Miranda Harmon-Smith,Kathleen Lail,Hope Tice,Jane Grimwood,Neil McKenzie,Naxin Huo,Yong Q. Gu,Gerard R. Lazo,Olin D. Anderson,Frank M. You,Ming-Cheng Luo,Jan Dvorak,Jonathan M. Wright,Melanie Febrer,Dominika Idziak,Robert Hasterok,Erika Lindquist,Mei Wang,Samuel E. Fox,Henry D. Priest,Sergei A. Filichkin,Scott A. Givan,Douglas W. Bryant,Jeff H. Chang,Haiyan Wu,Wei Wu,An-Ping Hsia,Patrick S. Schnable,Anantharaman Kalyanaraman,Brad Barbazuk,Todd P. Michael,Samuel P. Hazen,Jennifer N. Bragg,Debbie Laudencia-Chingcuanco,Yiqun Weng,Georg Haberer,Manuel Spannagl,Klaus F. X. Mayer,Thomas Rattei,Therese Mitros,Sang-Jik Lee,Jocelyn K. C. Rose,Lukas A. Mueller,Thomas L. York,Thomas Wicker,Jan P. Buchmann,Jaakko Tanskanen,Alan H. Schulman,Heidrun Gundlach,Michael W. Bevan,Antonio Costa de Oliveira,Luciano da C. Maia,William R. Belknap,Ning Jiang,Jinsheng Lai,Liucun Zhu,Jianxin Ma,Cheng Sun,Ellen J. Pritham,Jérôme Salse,Florent Murat,Michael Abrouk,Rémy Bruggmann,Joachim Messing,Noah Fahlgren,Christopher M. Sullivan,James C. Carrington,Elisabeth J. Chapman,Greg D. May,Jixian Zhai,Matthias Ganssmann,Sai Guna Ranjan Gurazada,Marcelo A German,Blake C. Meyers,Pamela J. Green,Ludmila Tyler,Jiajie Wu,James A. Thomson,Shan Chen,Henrik Vibe Scheller,Jesper Harholt,Peter Ulvskov,Jeffrey A. Kimbrel,Laura E. Bartley,Peijian Cao,Ki-Hong Jung,Manoj Sharma,Miguel E. Vega-Sánchez,Pamela C. Ronald,Chris Dardick,Stefanie De Bodt,Wim Verelst,Dirk Inzé,Maren Heese,Arp Schnittger,Xiaohan Yang,Udaya C. Kalluri,Gerald A. Tuskan,Zhihua Hua,Richard D. Vierstra,Yu Cui,Shuhong Ouyang,Qixin Sun,Zhiyong Liu,Alper Yilmaz,Erich Grotewold,Richard Sibout,Kian Hématy,Grégory Mouille,Herman Höfte,Todd P. Michael,Jérôme Pelloux,Devin O'Connor,James C. Schnable,Scott C. Rowe,Frank G. Harmon,Cynthia L. Cass,John C. Sedbrook,Mary E. Byrne,Sean Walsh,Janet Higgins,Pinghua Li,Thomas P. Brutnell,Turgay Unver,Hikmet Budak,Harry Belcram,Mathieu Charles,Boulos Chalhoub,Ivan Baxter +136 more
TL;DR: The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
Journal ArticleDOI
The role of root exudates and allelochemicals in the rhizosphere
TL;DR: Recent research onRoot exudation and the role of allelochemicals in the rhizosphere is outlined by studying the case of three plants that have been shown to produce allelopathic root exudates: black walnut, wheat and sorghum.
Journal ArticleDOI
Reference genome sequence of the model plant Setaria
Jeffrey L. Bennetzen,Jeremy Schmutz,Hao Wang,Ryan Percifield,Ryan Percifield,Jennifer S. Hawkins,Jennifer S. Hawkins,Ana Clara Pontaroli,Ana Clara Pontaroli,Matt C. Estep,Matt C. Estep,Liang Feng,Justin N. Vaughn,Jane Grimwood,Jerry Jenkins,Kerrie Barry,Erika Lindquist,Uffe Hellsten,Shweta Deshpande,Xuewen Wang,Xiaomei Wu,Xiaomei Wu,Therese Mitros,Jimmy K. Triplett,Jimmy K. Triplett,Xiaohan Yang,Chu-Yu Ye,Margarita Mauro-Herrera,Lin Wang,Pinghua Li,Manoj Sharma,Rita Sharma,Pamela C. Ronald,Olivier Panaud,Elizabeth A. Kellogg,Thomas P. Brutnell,Thomas P. Brutnell,Andrew N. Doust,Gerald A. Tuskan,Daniel S. Rokhsar,Katrien M. Devos +40 more
TL;DR: A high-quality reference genome sequence for foxtail millet (Setaria italica) is generated and regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion are identified.
Journal ArticleDOI
The genome of Eucalyptus grandis
Alexander Andrew Myburg,Dario Grattapaglia,Dario Grattapaglia,Gerald A. Tuskan,Gerald A. Tuskan,Uffe Hellsten,Richard D. Hayes,Jane Grimwood,Jerry Jenkins,Erika Lindquist,Hope Tice,Diane Bauer,David Goodstein,Inna Dubchak,Alexandre Poliakov,Eshchar Mizrachi,Anand Raj Kumar Kullan,Steven G. Hussey,Desre Pinard,Karen Van der Merwe,Pooja Singh,Ida Van Jaarsveld,Orzenil B. Silva-Junior,Roberto C. Togawa,Marília de Castro Rodrigues Pappas,Danielle A. Faria,Carolina Sansaloni,Cesar Petroli,Xiaohan Yang,Priya Ranjan,Timothy J. Tschaplinski,Chu-Yu Ye,Ting Li,Lieven Sterck,Kevin Vanneste,Florent Murat,Marçal Soler,Hélène San Clemente,Naijib Saidi,Hua Cassan-Wang,Christophe Dunand,Charles A. Hefer,Charles A. Hefer,Erich Bornberg-Bauer,Anna R. Kersting,Anna R. Kersting,Kelly J. Vining,Vindhya Amarasinghe,Martin Ranik,Sushma Naithani,Justin Elser,Alexander Boyd,Aaron Liston,Joseph W. Spatafora,Palitha Dharmwardhana,Rajani Raja,Christopher M. Sullivan,Elisson Romanel,Elisson Romanel,Marcio Alves-Ferreira,Carsten Külheim,William J. Foley,Victor Carocha,Jorge A. P. Paiva,David Kudrna,Sérgio Hermínio Brommonschenkel,Giancarlo Pasquali,Margaret Byrne,Philippe Rigault,Josquin Tibbits,Antanas V. Spokevicius,Rebecca C. Jones,Dorothy A. Steane,Dorothy A. Steane,René E. Vaillancourt,Brad M. Potts,Fourie Joubert,Kerrie Barry,Georgios J. Pappas,Steven H. Strauss,Pankaj Jaiswal,Jacqueline Grima-Pettenati,Jérôme Salse,Yves Van de Peer,Yves Van de Peer,Daniel S. Rokhsar,Jeremy Schmutz,Jeremy Schmutz +87 more
TL;DR: Of 36,376 predicted protein-coding genes, 34% occur in tandem duplications, the largest proportion thus far in plant genomes, which shows the highest diversity of genes for specialized metabolites such as terpenes that act as chemical defence and provide unique pharmaceutical oils.
Journal ArticleDOI
The pineapple genome and the evolution of CAM photosynthesis
Ray Ming,Ray Ming,Robert VanBuren,Robert VanBuren,Robert VanBuren,Ching Man Wai,Ching Man Wai,Haibao Tang,Haibao Tang,Michael C. Schatz,John E. Bowers,Eric Lyons,Ming Li Wang,Jung Chen,Eric Biggers,Jisen Zhang,Lixian Huang,Lingmao Zhang,Wenjing Miao,Jian Zhang,Zhangyao Ye,Chenyong Miao,Zhicong Lin,Hao Wang,Hongye Zhou,Won Cheol Yim,Henry D. Priest,Chunfang Zheng,Margaret R. Woodhouse,Patrick P. Edger,Romain Guyot,Hao-Bo Guo,Hong Guo,Guangyong Zheng,Ratnesh Singh,Anupma Sharma,Xiang Jia Min,Yun Zheng,Hayan Lee,James Gurtowski,Fritz J. Sedlazeck,Alex Harkess,Michael R. McKain,Zhenyang Liao,Jingping Fang,Juan Liu,Xiaodan Zhang,Qing Zhang,Weichang Hu,Yuan Qin,Kai Wang,Li Yu Chen,Neil J. Shirley,Yann-Rong Lin,Li Yu Liu,Alvaro G. Hernandez,Chris L. Wright,Vincent Bulone,Gerald A. Tuskan,Katy D. Heath,Francis Zee,Paul H. Moore,Ramanjulu Sunkar,Jim Leebens-Mack,Todd C. Mockler,Jeffrey L. Bennetzen,Michael Freeling,David Sankoff,Andrew H. Paterson,Xin-Guang Zhu,Xiaohan Yang,J. Andrew C. Smith,John C. Cushman,Robert E. Paull,Qingyi Yu +74 more
TL;DR: The pineapple lineage has transitioned from C3 photosynthesis to CAM, with CAM-related genes exhibiting a diel expression pattern in photosynthetic tissues, providing the first cis-regulatory link between CAM and circadian clock regulation.