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Sean Upchurch
Researcher at California Institute of Technology
Publications - 9
Citations - 131
Sean Upchurch is an academic researcher from California Institute of Technology. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 3, co-authored 4 publications receiving 59 citations. Previous affiliations of Sean Upchurch include Beckman Research Institute.
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GA4GH: International policies and standards for data sharing across genomic research and healthcare
Heidi L. Rehm,Heidi L. Rehm,Angela Page,Lindsay Smith,Jeremy Adams,Gil Alterovitz,Gil Alterovitz,Lawrence J. Babb,Maxmillian P. Barkley,Michael Baudis,Michael Baudis,Michael J.S. Beauvais,Tim Beck,Jacques S. Beckmann,Sergi Beltran,Sergi Beltran,David Bernick,Alexander Bernier,James K. Bonfield,Tiffany Boughtwood,Guillaume Bourque,Sarion R. Bowers,Anthony J. Brookes,Michael Brudno,Matthew H. Brush,David Bujold,Tony Burdett,Orion J. Buske,Moran N. Cabili,Daniel L Cameron,Daniel L Cameron,Robert J. Carroll,Esmeralda Casas-Silva,Debyani Chakravarty,Bimal Chaudhari,Bimal Chaudhari,Shu Hui Chen,J. Michael Cherry,Justina Chung,Melissa S. Cline,Hayley L. Clissold,Robert Cook-Deegan,Mélanie Courtot,Fiona Cunningham,Miro Cupak,Robert L. Davies,Danielle Denisko,Megan Doerr,Lena I. Dolman,Edward S. Dove,L. Jonathan Dursi,Stephanie O.M. Dyke,James A. Eddy,Karen Eilbeck,Kyle Ellrott,Susan Fairley,Khalid A. Fakhro,Khalid A. Fakhro,Helen V. Firth,Michael S. Fitzsimons,Marc Fiume,Paul Flicek,Ian Fore,Mallory A. Freeberg,Robert R. Freimuth,Lauren A. Fromont,Jonathan Fuerth,Clara L. Gaff,Weiniu Gan,Elena M. Ghanaim,David Glazer,Robert C. Green,Robert C. Green,Malachi Griffith,Obi L. Griffith,Robert L. Grossman,Tudor Groza,Jaime M. Guidry Auvil,Roderic Guigó,Dipayan Gupta,Melissa Haendel,Ada Hamosh,David Hansen,Reece K. Hart,Dean Hartley,David Haussler,Rachele M. Hendricks-Sturrup,Calvin W. L. Ho,Ashley E. Hobb,Michael M. Hoffman,Michael M. Hoffman,Oliver Hofmann,Oliver Hofmann,Petr Holub,Jacob Shujui Hsu,Jean-Pierre Hubaux,Sarah E. Hunt,Ammar Husami,Julius O.B. Jacobsen,Saumya Shekhar Jamuar,Elizabeth L. Janes,Francis Jeanson,Aina Jene,Amber L. Johns,Yann Joly,Steven J.M. Jones,Alexander Kanitz,Alexander Kanitz,Kazuto Kato,Thomas M. Keane,Thomas M. Keane,Kristina Kekesi-Lafrance,Jerome Kelleher,Giselle Kerry,Seik-Soon Khor,Bartha Maria Knoppers,Melissa A. Konopko,Kenjiro Kosaki,Martin Kuba,Jonathan Lawson,Rasko Leinonen,Stephanie Li,Michael F. Lin,Mikael Linden,Xianglin Liu,Isuru Udara Liyanage,Javier Lopez,Anneke M. Lucassen,Michael Lukowski,Alice L. Mann,John F. Marshall,Michele Mattioni,Alejandro Metke-Jimenez,Anna Middleton,Richard Milne,Fruzsina Molnár-Gábor,Nicola Mulder,Monica C. Munoz-Torres,Rishi Nag,Hidewaki Nakagawa,Jamal Nasir,Arcadi Navarro,Tristan H. Nelson,Ania Niewielska,Amy Nisselle,Jeffrey Niu,Tommi Nyrönen,Brian O'Connor,Sabine Oesterle,Soichi Ogishima,Vivian Ota Wang,Laura A.D. Paglione,Emilio Palumbo,Helen Parkinson,Anthony A. Philippakis,Angel Pizarro,Andreas Prlic,Jordi Rambla,Augusto Rendon,Renee A. Rider,Peter N. Robinson,Kurt W. Rodarmer,Laura Lyman Rodriguez,Alan F. Rubin,Alan F. Rubin,Manuel Rueda,Gregory A. Rushton,Rosalyn S. Ryan,Gary I. Saunders,Helen Schuilenburg,Torsten Schwede,Torsten Schwede,Serena Scollen,Alexander Senf,Nathan C. Sheffield,Neerjah Skantharajah,Albert V. Smith,Heidi J. Sofia,Dylan Spalding,Amanda B. Spurdle,Zornitza Stark,Lincoln Stein,Lincoln Stein,Makoto Suematsu,Patrick Tan,Patrick Tan,Jonathan A. Tedds,Alastair A. Thomson,Adrian Thorogood,Adrian Thorogood,Timothy L. Tickle,Katsushi Tokunaga,Juha Törnroos,David Torrents,David Torrents,Sean Upchurch,Alfonso Valencia,Alfonso Valencia,Roman Valls Guimera,Jessica Vamathevan,Susheel Varma,Danya F. Vears,Coby Viner,Coby Viner,Craig Voisin,Alex H. Wagner,Alex H. Wagner,Susan E. Wallace,Brian Walsh,Marc S. Williams,Eva C. Winkler,Barbara J. Wold,Grant M. Wood,J. Patrick Woolley,Chisato Yamasaki,Andrew D. Yates,Christina K. Yung,Lyndon J. Zass,Ksenia Zaytseva,Junjun Zhang,Peter Goodhand,Kathryn North,Kathryn North,Ewan Birney +223 more
TL;DR: The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical advances by enabling the responsible sharing of clinical and genomic data through both harmonized data aggregation and federated approaches.
Journal ArticleDOI
Structure and DNA-binding Sites of the SWI1 AT-rich Interaction Domain (ARID) Suggest Determinants for Sequence-specific DNA Recognition
TL;DR: Results from this study indicate that a flexible, long, internal loop in the ARID motif is likely to be important for sequence-specific DNA recognition, and the three-dimensional structure of human SWI1 ARID is solved using solution NMR methods.
Proceedings ArticleDOI
Demonstration of the remote exploration and experimentation (REE) fault-tolerant parallel-processing supercomputer for spacecraft onboard scientific data processing
F. Chen,L. Craymer,J. Deifik,A.J. Fogel,Daniel S. Katz,A.G. Silliman,R.R. Some,Sean Upchurch,Keith A. Whisnant +8 more
TL;DR: A demonstration of the REE Project's work to date, intended to simulate an REE system that might exist on a Mars rover, consisting of multiple COTS processors, a COTS network, aCOTS node-level operating system, REE middleware, and an REe application.
Proceedings Article
Mining the Detector Responses of a Conducting Polymer Composite-Based Electronic Nose.
Michael C. Burl,Shawn M. Briglin,Brett J. Doleman,Alan R. Hopkins,Adam J. Matzger,D. N. Ortiz,A. Schaffer,Sean Upchurch,Thomas P. Vaid,Nathan S. Lewis +9 more
TL;DR: An overview of the efforts to mine useful information from electronic nose data is presented: rapid detection of DNT (dinitrotoluene) vapors at very low concentrations, pairwise discrimination between chemically similar analytes, prediction of human percepts of odor quality from electronic Nose detector responses, and classification of vapors into the appropriate chemical family.
Journal ArticleDOI
Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes
Federico Abascal,Reyes Acosta,Nicholas Addleman,Jessika Adrian,Veena Afzal,Bronwen Aken,Jennifer A. Akiyama,Omar M. Al Jammal,Henry Amrhein,Stacie M. Anderson,Gregory R. Andrews,Igor Antoshechkin,Kristin G. Ardlie,Joel Armstrong,Matthew Astley,Budhaditya Banerjee,Amira A. Barkal,If H. A. Barnes,Iros Barozzi,Daniel Barrell,Gemma Barson,Daniel Bates,Ulugbek K. Baymuradov,Cassandra Bazile,Michael A. Beer,Samantha Beik,M. A. Bender,Ruth Bennett,Louis Philip Benoit Bouvrette,Bradley E. Bernstein,Andrew Berry,Anand Bhaskar,Alexandra Bignell,Steven M. Blue,David M. Bodine,Carles Boix,Nathan Boley,Tyler M. Borrman,Beatrice Borsari,Alan P. Boyle,Laurel A. Brandsmeier,Alessandra Breschi,Emery H. Bresnick,Jason A. Brooks,Michael Buckley,Christopher B. Burge,Rachel Byron,Eileen W. Cahill,Lingling Cai,Lulu Cao,Mark F. Mc Carty,Rosa Castanon,Andres Castillo,Hassan Chaib,Esther T. Chan,Daniel R. Chee,Sora Chee,Hao Chen,Huaming Chen,Jiayu Chen,Songjie Chen,Surya B. Chhetri,Jyoti S. Choudhary,Jacqueline Chrast,Dongjun Chung,Declan Clarke,Neal A.L. Cody,Candice J. Coppola,Julie Coursen,Anthony D'Ippolito,Stephen George Dalton,Cassidy Danyko,R. Davidson,Jose Davila-Velderrain,Carrie A. Davis,Alden Deran,Gilberto DeSalvo,Gloria Despacio-Reyes,Colin N. Dewey,Morgan Diegel,Mark Diekhans,Vishnu Dileep,Bo Ding,Sarah Djebali,Alexander Dobin,Daniel Dominguez,Sarah Donaldson,Jorg Drenkow,Timothy R. Dreszer,Yotam Drier,Michael O. Duff,Douglas Dunn,Catharine L. Eastman,Matthew D. Edwards,Nicole C. El-Ali,Shaimae I. Elhajjajy,Keri Elkins,Andrew Emili,Charles B. Epstein,Rachel C. Evans,Iakes Ezkurdia,Kaili Fan,Nina Farrell,Elise A. Feingold,Anne-Maud Ferreira,Katherine I. Fisher-Aylor,Stephen Fitzgerald,Paul Flicek,Chuan-Sheng Foo,Kevin Fortier,Adam Frankish,Peter Freese,Shaliu Fu,Xiang-Dong Fu,Yu Fu,Yoko Fukuda-Yuzawa,Mariateresa Fulciniti,Alister P. W. Funnell,Idan Gabdank,Timur R. Galeev,Mingshi Gao,Carlos García Girón,Tyler H. Garvin,Chelsea Gelboin-Burkhart,Grigorios Georgolopoulos,Mark Gerstein,Belinda Giardine,David K. Gifford,Daniel A. Gilchrist,Shawn M. Gillespie,Thomas R. Gingeras,Peng Gong,Alvaro J. González,José M. González,Peter Good,Alon Goren,David U. Gorkin,Brenton R. Graveley,Michael Gray,Jack Greenblatt,Edward Griffiths,Mark Groudine,Fabian Grubert,Mengting Gu,Roderic Guigó,Hongbo Guo,Yu Guo,Yuchun Guo,Gamze Gursoy,Maria Gutierrez-Arcelus,Jessica Halow,Matthew P. Hardy,Manoj Hariharan,Arif Harmanci,Anne Harrington,Jennifer Harrow,Tatsunori Hashimoto,Richard Hasz,Meital Hatan,Eric Haugen,James E Hayes,Peng He,Yupeng He,Nastaran Fadaei Heidari,David Hendrickson,Elisabeth F. Heuston,Jason A. Hilton,Benjamin C. Hitz,Abigail Hochman,Cory Holgren,Lei Hou,Shuyu Hou,Yun-Hua Esther Hsiao,Shan Chun Hsu,Hui Huang,Tim Hubbard,Jack Huey,Timothy P. Hughes,Toby Hunt,Sean Ibarrientos,Robbyn Issner,Mineo Iwata,Osagie G. Izuogu,Tommi S. Jaakkola,Nader Jameel,Camden Sinclair Jansen,Lixia Jiang,Peng Jiang,Audra K. Johnson,Rory Johnson,Irwin Jungreis,Madhura Kadaba,Maya Kasowski,M.A. Kasparian,Momoe Kato,Rajinder Kaul,Trupti Kawli,M. Kay,Judith C. Keen,Sunduz Keles,Cheryl A. Keller,David R. Kelley,Pouya Kheradpour,Daniel S Kim,Anthony Kirilusha,Birgit Knoechel,Samantha Kuan,Michael J. Kulik,Sushant Kumar,Anshul Kundaje,Tanya Kutyavin,Julien Lagarde,Bryan R. Lajoie,Nicole J. Lambert,John Lazar,Ah Young Lee,Donghoon Lee,Elizabeth Lee,Jin Wook Lee,Kristen Lee,Christina S. Leslie,Shawn Levy,Bin Li,Hairi Li,Nan Li,Xiangrui Li,Yang Li,Ying Li,Yining Li,Yue Liu,Jin Lian,Max Libbrecht,Shin Lin,Yiing Lin,Dianbo Liu,Jason Liu,Peng Li,Tingting Liu,X. Shirley Liu,Yang Liu,Yaping Liu,Maria R. Long,Shaoke Lou,Jane E. Loveland,Aiping Lu,Yun Lu,Eric Lécuyer,Lijia Ma,Brandon J. Mannion,Michael Mannstadt,Deepa Manthravadi,Georgi K. Marinov,Fergal J. Martin,Eugenio Mattei,Kenneth McCue,Megan McEown,Graham McVicker,Sarah Meadows,Alexander Meissner,Eric M. Mendenhall,C. Luke Messer,Wouter Meuleman,Clifford A. Meyer,Steve Miller,Matthew G. Milton,Tejaswini Mishra,Dianna E. Moore,Helen M. Moore,Samuel H. Moore,Jennifer L. Moran,Jonathan M. Mudge,Nikhil C. Munshi,Rabi Murad,Richard M. Myers,Vivek Nandakumar,Preetha Nandi,Anil M Narasimha,Aditi K. Narayanan,Hannah Naughton,Fabio C. P. Navarro,Patrick A. Navas,Jurijs Nazarovs,Jemma Nelson,Shane Neph,Fidencio Neri,Joseph R. Nery,Amy R. Nesmith,J. Scott Newberry,Kimberly M. Newberry,Vu Ngo,R. W. Nguyen,Thai B. Nguyen,Tung Nguyen,Andrew Nishida,William Stafford Noble,Catherine S. Novak,Eva Maria Novoa,Briana M. Nunez,Charles W. O'Donnell,Sara H. Olson,Kathrina C. Onate,Ericka Otterman,Hakan Ozadam,Michael J. Pagán,Tsultrim Palden,Xinghua Pan,Yongjin Park,E. Christopher Partridge,Benedict Paten,Florencia Pauli-Behn,Michael J. Pazin,Baikang Pei,Len A. Pennacchio,Alexander R Perez,Emily Perry,Dmitri D. Pervouchine,Nishigandha N. Phalke,Quan T. Pham,Douglas H. Phanstiel,Ingrid Plajzer-Frick,Gabriel A. Pratt,Henry Pratt,Sebastian Preissl,Jonathan K. Pritchard,Yuri Pritykin,Qian Qin,Giovanni Quinones-Valdez,Ines Rabano,Ernest Radovani,Anil Raj,Nisha Rajagopal,Oren Ram,L. Ramirez,Ricardo Ramirez,Dylan M. Rausch,Soumya Raychaudhuri,Joseph Raymond,Rozita Razavi,Timothy E. Reddy,Thomas M. Reimonn,Bing Ren,Alexandre Reymond,Alex Reynolds,Suhn K. Rhie,Miguel Rivera,Brian S. Roberts,Jose Manuel Rodriguez,Russell J. Ryan,Eric Rynes,Denis Salins,Richard Sandstrom,Takayo Sasaki,Shashank Sathe,Daniel Savic,Alexandra Scavelli,Jonathan Scheiman,Christoph N. Schlaffner,Jeffery A. Schloss,Frank W. Schmitges,Lei-Hoon See,Anurag Sethi,Manu Setty,Anthony Shafer,Shuo Shan,Eilon Sharon,Quanwen Shen,Richard I. Sherwood,Minyi Shi,Sunyoung Shin,Noam Shoresh,Kyle Siebenthall,Cristina Sisu,Teri Slifer,Cricket A. Sloan,Anna M. Smith,Valentina Snetkova,Michael Snyder,Damek V. Spacek,Sharanya Srinivasan,Rohith Srivas,George Stamatoyannopoulos,John A. Stamatoyannopoulos,Rebecca Stanton,D. Steffan,Sandra Stehling-Sun,J. Seth Strattan,Amanda Su,Balaji Sundararaman,Marie-Marthe Suner,Tahin Fahmid Syed,Matt Szynkarek,Forrest Y. Tanaka,Daniel G. Tenen,Ming Chuin Teng,Jeffrey Thomas,David Toffey,Michael L. Tress,Diane Trout,Gosia Trynka,Junko Tsuji,Sean Upchurch,Oana Ursu,Barbara Uszczynska-Ratajczak,Mia C. Uziel,Alfonso Valencia,Benjamin Van Biber,A. van der Velde,Eric L. Van Nostrand,Yekaterina Vaydylevich,Jesús Vázquez,Alec Victorsen,Jost Vielmetter,Jeff Vierstra,Anna Vlasova,Christopher M. Vockley,Simona Volpi,Shinny Vong,Hao Wang,Mengchi Wang,Qin Wang,Ruth Wang,Tao Wang,Wei Wang,Xiao-feng Wang,Yanli Wang,Nathaniel Watson,Xintao Wei,Zhijie Wei,Hendrik Weisser,Sherman M. Weissman,Rene Welch,Robert E. Welikson,Zhiping Weng,Harm-Jan Westra,John W. Whitaker,Collin White,Kevin P. White,Andre Wildberg,Brian A. Williams,D. Wine,Heather Witt,Maxim Y Wolf,James Santa Barbara Wright,Rui Xiao,Xinshu Xiao,Jie Xu,Jinrui Xu,Koon-Kiu Yan,Yongqi Yan,Hongbo Yang,Xinqiong Yang,Yi-Wen Yang,Galip Gürkan Yardımcı,Brian A. Yee,Gene W. Yeo,Taylor Young,Tianxiong Yu,Feng Yue,Chris Zaleski,C. Zang,Haoyang Zeng,Weihua Zeng,Daniel R. Zerbino,Jieru Zhai,Lijun Zhan,Ye Zhan,Bohan Zhang,Jialing Zhang,Jing Zhang,Kai Zhang,Lijun Zhang,Peng Zhang,Qi Qi Zhang,Xiao-Ou Zhang,Yanxiao Zhang,Zhizhuo Zhang,Yuan Zhao,Ye Zheng,Guoqing Zhong,Xiaoyan Zhou,Yun Zhu,Jared Zimmerman,Rizi Ai,Shantao Li,Jill Moore,Michael J. Purcaro,Yin Shen,Mark Mackiewicz,Ali Mortazavi,Diane E. Dickel,Juan Carlos Rivera-Mulia,Joel Rozowsky,Axel Visel,David Gilbert,Job Dekker,John L. Rinn,Joseph R. Ecker,Manolis Kellis,Robert J. Klein,Peggy J. Farnham,J. Michael Cherry,Barbara J. Wold,Ross C. Hardison +502 more