University of Rhode Island

About: University of Rhode Island is a education organization based out in Kingston, Rhode Island, United States. It is known for research contribution in the topics: Population & Bay. The organization has 11464 authors who have published 22770 publications receiving 841066 citations. The organization is also known as: URI & Rhode Island College of Agriculture and the Mechanic Arts.

The early Miocene onset of a ventilated circulation regime in the Arctic Ocean

Abstract: Deep-water formation in the northern North Atlantic Ocean and the Arctic Ocean is a key driver of the global thermohaline circulation and hence also of global climate1. Deciphering the history of the circulation regime in the Arctic Ocean has long been prevented by the lack of data from cores of Cenozoic sediments from the Arctic's deep-sea floor. Similarly, the timing of the opening of a connection between the northern North Atlantic and the Arctic Ocean, permitting deep-water exchange, has been poorly constrained. This situation changed when the first drill cores were recovered from the central Arctic Ocean2. Here we use these cores to show that the transition from poorly oxygenated to fully oxygenated ('ventilated') conditions in the Arctic Ocean occurred during the later part of early Miocene times. We attribute this pronounced change in ventilation regime to the opening of the Fram Strait. A palaeo-geographic and palaeo-bathymetric reconstruction of the Arctic Ocean, together with a physical oceanographic analysis of the evolving strait and sill conditions in the Fram Strait, suggests that the Arctic Ocean went from an oxygen-poor 'lake stage', to a transitional 'estuarine sea' phase with variable ventilation, and finally to the fully ventilated 'ocean' phase 17.5 Myr ago. The timing of this palaeo-oceanographic change coincides with the onset of the middle Miocene climatic optimum3, although it remains unclear if there is a causal relationship between these two events.

"A Strikingly Rich Zone"-Nutrient Enrichment and Secondary Production in Coastal Marine Ecosystems

Abstract: Despite a recent review concluding that there is little or no reason to expect that the production of fish and other animals will increase with nutrient enrichment or eutrophication, there is a variety of evidence that anthropogenic nutrients can stimulate secondary production in marine ecosystems. Unique multiple-year fertilization experiments were carried out over fifty years ago in Scottish sea lochs that showed dramatic increases in the abundance of benthic infauna and greatly enhanced growth of fish as a result of inorganic nitrogen (N) and phosphorus (P) additions. These experiments appear to have provided a good qualitative model for the responses of the Baltic Sea to nutrient enrichment and resulting eutrophication. Historical comparisons by others have shown that the weight of benthic animals per unit area above the halocline in the Baltic is now up to 10 or 20 times greater than it was in the early 1920s and that the total fish biomass in the system may have increased 8 fold between the early part of the 1900s and the 1970s. While there are no similar data for the highly enriched central and southern North Sea, there is convincing evidence that the growth rates of plaice, sole, and other species have increased there since the 1960s or 1970s. Cross-system comparisons have also shown that there are strong correlations between primary production and the production and yield of fish and the standing crop and production of benthic macrofauma in phytoplankton-dominated marine ecosystems. Concerns over the growing nutrient (especially N) enrichment of coastal marine waters are clearly valid and deserve the attention of scientists and managers, but the recent demonizing of N ignores the fact that nutrients are a fundamental requirement for producing biomass. Decisions regarding the amount of N or P that will be allowed to enter marine ecosystems should be made with the full knowledge that there may be tradeoffs between increases in water clarity and dissolved oxygen and the abundance of oysters, clams, fish, and other animals we desire.

Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis

Abstract: The 6.10-Mb genome sequence of the aerobic chitin-digesting gliding bacterium Flavobacterium johnsoniae (phylum Bacteroidetes) is presented. F. johnsoniae is a model organism for studies of bacteroidete gliding motility, gene regulation, and biochemistry. The mechanism of F. johnsoniae gliding is novel, and genome analysis confirms that it does not involve well-studied motility organelles, such as flagella or type IV pili. The motility machinery is composed of Gld proteins in the cell envelope that are thought to comprise the "motor" and SprB, which is thought to function as a cell surface adhesin that is propelled by the motor. Analysis of the genome identified genes related to sprB that may encode alternative adhesins used for movement over different surfaces. Comparative genome analysis revealed that some of the gld and spr genes are found in nongliding bacteroidetes and may encode components of a novel protein secretion system. F. johnsoniae digests proteins, and 125 predicted peptidases were identified. F. johnsoniae also digests numerous polysaccharides, and 138 glycoside hydrolases, 9 polysaccharide lyases, and 17 carbohydrate esterases were predicted. The unexpected ability of F. johnsoniae to digest hemicelluloses, such as xylans, mannans, and xyloglucans, was predicted based on the genome analysis and confirmed experimentally. Numerous predicted cell surface proteins related to Bacteroides thetaiotaomicron SusC and SusD, which are likely involved in binding of oligosaccharides and transport across the outer membrane, were also identified. Genes required for synthesis of the novel outer membrane flexirubin pigments were identified by a combination of genome analysis and genetic experiments. Genes predicted to encode components of a multienzyme nonribosomal peptide synthetase were identified, as were novel aspects of gene regulation. The availability of techniques for genetic manipulation allows rapid exploration of the features identified for the polysaccharide-digesting gliding bacteroidete F. johnsoniae.

Laurentide ice sheet meltwater recorded in gulf of Mexico deep-sea cores.

Abstract: Oxygen isotopic measurements in three Late Quaternary deep-sea cores from the Gulf of Mexico record a major anomaly between about 15,000 and 12,000 years ago superimposed on a more characteristic oceanic oxygen isotopic curve. This resulted from major influx of isotopically light glacial meltwater via the Mississippi River from the disintegrating Late Wisconsin Laurentide Ice Sheet 2000 kilometers to the north.