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The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment

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TLDR
An international effort to guide arthropod genomic efforts, from species prioritization to methodology and informatics is described, which aims to deliver sequences and analytical tools for each of theArthropod branches andEach of the species having beneficial and negative effects on humankind.
Abstract
Insects and their arthropod relatives including mites, spiders, and crustaceans play major roles in the world's terrestrial, aquatic, and marine ecosystems Arthropods compete with humans for food and transmit devastating diseases They also comprise the most diverse and successful branch of metazoan evolution, with millions of extant species Here, we describe an international effort to guide arthropod genomic efforts, from species prioritization to methodology and informatics The 5000 arthropod genomes initiative (i5K) community met formally in 2012 to discuss a roadmap for sequencing and analyzing 5000 high-priority arthropods and is continuing this effort via pilot projects, the development of standard operating procedures, and training of students and career scientists, With university, governmental, and industry support, the i5K Consortium aspires to deliver sequences and analytical tools for each of the arthropod branches and each of the species having beneficial and negative effects on humankind

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Genome architecture of an exceptionally invasive copepod crossing salinity boundaries

TL;DR: The first chromosome-level genome of a calanoid copepod, from the Atlantic clade ( Eurytemora carolleeae ) of the E. affinis species complex, was presented in this article .
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RNA interference in the study of gene functions in aphids and other hemipterans and the fight against their harmful representatives

TL;DR: In this paper , the authors discuss the criteria for selecting target genes and the issues of their functional activity solved by RNAi, methods for delivering double-stranded and small RNAs to organisms of various Hemiptera, the non-target effects of RNAi and the ways to prevent them, as well as possible practical outcomes of using this approach to control hemipteran pests of agricultural plants and vectors of dangerous human and animal diseases.
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Performance analysis of conventional and AI-based variant callers using short and long reads

TL;DR: In this article , the authors evaluated the most widely used conventional and AI-based variant calling tools in terms of accuracy and computational cost using both short-read and long-read data derived from three different sequencing technologies for the same set of samples from the Genome In A Bottle (GIAB) project.
References
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The genome sequence of Drosophila melanogaster

Mark Raymond Adams, +194 more
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TL;DR: The nucleotide sequence of nearly all of the approximately 120-megabase euchromatic portion of the Drosophila genome is determined using a whole-genome shotgun sequencing strategy supported by extensive clone-based sequence and a high-quality bacterial artificial chromosome physical map.
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The genome of Tetranychus urticae reveals herbivorous pest adaptations

Miodrag Grbic, +60 more
- 24 Nov 2011 - 
TL;DR: The Tetranychus urticae genome is the smallest known arthropod genome as discussed by the authors, which represents the first complete chelicerate genome for a pest and has been annotated with genes associated with feeding on different hosts.
Journal ArticleDOI

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

David Haussler, +69 more
- 01 Nov 2009 - 
TL;DR: A precipitous drop in costs and increase in sequencing efficiency is anticipated, with concomitant development of improved annotation technology, and it is proposed to create a collection of tissue and DNA specimens for 10,000 vertebrate species specifically designated for whole-genome sequencing in the very near future.
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