The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment
Jay D. Evans,Susan J. Brown,Kevin J. Hackett,Gene E. Robinson,Stephen Richards,Daniel Lawson,Christine G. Elsik,Jonathan A. Coddington,Owain R. Edwards,Scott J. Emrich,Toni Gabaldón,Marian R. Goldsmith,Glenn Hanes,Bernard Misof,Monica Munoz-Torres,Oliver Niehuis,Alexie Papanicolaou,Michael E. Pfrender,Monica F. Poelchau,Mary Purcell-Miramontes,Hugh M. Robertson,Oliver A. Ryder,Denis Tagu,Tatiana Teixeira Torres,Evgeny M. Zdobnov,Guojie Zhang,Xin Zhou +26 more
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TLDR
An international effort to guide arthropod genomic efforts, from species prioritization to methodology and informatics is described, which aims to deliver sequences and analytical tools for each of theArthropod branches andEach of the species having beneficial and negative effects on humankind.Abstract:
Insects and their arthropod relatives including mites, spiders, and crustaceans play major roles in the world's terrestrial, aquatic, and marine ecosystems Arthropods compete with humans for food and transmit devastating diseases They also comprise the most diverse and successful branch of metazoan evolution, with millions of extant species Here, we describe an international effort to guide arthropod genomic efforts, from species prioritization to methodology and informatics The 5000 arthropod genomes initiative (i5K) community met formally in 2012 to discuss a roadmap for sequencing and analyzing 5000 high-priority arthropods and is continuing this effort via pilot projects, the development of standard operating procedures, and training of students and career scientists, With university, governmental, and industry support, the i5K Consortium aspires to deliver sequences and analytical tools for each of the arthropod branches and each of the species having beneficial and negative effects on humankindread more
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Journal ArticleDOI
Neuropeptides and peptide hormones identified in codling moth, Cydia pomonella (Lepidoptera: Tortricidae)
Stephen F. Garczynski,Christopher Hendrickson,Artemus Harper,Thomas R. Unruh,Amit Dhingra,Seung-Joon Ahn,Seung-Joon Ahn,Man-Yeon Choi +7 more
TL;DR: One of the notable findings in this study is that diapause hormones reported from Tortricid moths, including the codling moth, do not have the WFGPRL sequence in C-terminal ends in the pban genes.
Posted ContentDOI
Long-reads are revolutionizing 20 years of insect genome sequencing
Scott Hotaling,John S. Sproul,Jacqueline Heckenhauer,Ashlyn Powell,Amanda M. Larracuente,Steffen U. Pauls,Steffen U. Pauls,Joanna L. Kelley,Paul B. Frandsen,Paul B. Frandsen +9 more
TL;DR: The authors analyzed the most-contiguous assembly for each species and provided a "state of the field" perspective, emphasizing taxonomic representation, assembly quality, gene completeness, and sequencing technologies.
DissertationDOI
The evolution of chemoreception in the invasive pest drosophila suzukii and other arthropods
TL;DR: This research highlights the need to understand more fully the role of emotion in the development of central nervous system disorders and the role that emotion plays in the decision-making process.
Journal ArticleDOI
Analysis of Pigment-Dispersing Factor Neuropeptides and Their Receptor in a Velvet Worm.
Christine Martin,Lars Hering,Niklas Metzendorf,Sarah Hormann,Sonja Kasten,Sonja Fuhrmann,Achim Werckenthin,Friedrich W. Herberg,Monika Stengl,Georg Mayer +9 more
TL;DR: The detection of the onychophoran PDF receptor in cells that additionally express the two PDF peptides suggests autoreception, whereas spatial separation of PDFR- and PDF-expressing cells supports hormonal release of PDF into the hemolymph, which suggests a dual role of PDF peptide—as hormones and as neurotransmitters/neuromodulators—in Onychophile.
Journal ArticleDOI
Phylogenetic analysis of forkhead transcription factors in the Panarthropoda
TL;DR: Lin et al. as discussed by the authors performed phylogenetic analyses of the Fox gene complements of 32 panarthropod species, including tardigrades and onychophorans, and identified a novel Fox gene sub-family, that they designate as FoxT that includes two genes in Drosophila melanogaster, Circadianly Regulated Gene (Crg-1) and forkhead domain 3F (fd3F).
References
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TL;DR: The nucleotide sequence of nearly all of the approximately 120-megabase euchromatic portion of the Drosophila genome is determined using a whole-genome shotgun sequencing strategy supported by extensive clone-based sequence and a high-quality bacterial artificial chromosome physical map.
Journal ArticleDOI
The genome of Tetranychus urticae reveals herbivorous pest adaptations
Miodrag Grbic,Miodrag Grbic,Thomas Van Leeuwen,Richard M. Clark,Stephane Rombauts,Pierre Rouzé,Vojislava Grbic,Vojislava Grbic,Edward J. Osborne,Wannes Dermauw,Phuong Cao Thi Ngoc,Félix Ortego,Pedro Hernández-Crespo,Isabel Diaz,Manuel Martinez,Maria Navajas,Élio Sucena,Élio Sucena,Sara Magalhães,Lisa M. Nagy,Ryan M. Pace,Sergej Djuranovic,Guy Smagghe,Masatoshi Iga,Olivier Christiaens,Jan A. Veenstra,John Ewer,Rodrigo Mancilla Villalobos,Jeffrey L. Hutter,Stephen D. Hudson,Marisela Vélez,Marisela Vélez,Soojin V. Yi,Jia Zeng,Andre Pires-daSilva,Fernando Roch,Marc Cazaux,Marie Navarro,Vladimir Zhurov,Gustavo Acevedo,Anica Bjelica,Jeffrey A. Fawcett,Jeffrey A. Fawcett,Eric Bonnet,Eric Bonnet,Cindy Martens,Guy Baele,Lothar Wissler,Aminael Sánchez-Rodríguez,Luc Tirry,Catherine Blais,Kristof Demeestere,Stefan R. Henz,T. Ryan Gregory,Johannes Mathieu,Lou Verdon,Laurent Farinelli,Jeremy Schmutz,Erika Lindquist,René Feyereisen,Yves Van de Peer +60 more
TL;DR: The Tetranychus urticae genome is the smallest known arthropod genome as discussed by the authors, which represents the first complete chelicerate genome for a pest and has been annotated with genes associated with feeding on different hosts.
Journal ArticleDOI
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
David Haussler,Stephen J. O'Brien,Oliver A. Ryder,F. Keith Barker,Michele Clamp,Andrew J. Crawford,Robert Hanner,Olivier Hanotte,Warren E. Johnson,Jimmy A. McGuire,Webb Miller,Robert W. Murphy,William J. Murphy,Frederick H. Sheldon,Barry Sinervo,Byrappa Venkatesh,Edward O. Wiley,Fred W. Allendorf,George Amato,C. Scott Baker,Aaron M. Bauer,Albano Beja-Pereira,Eldredge Bermingham,Giacomo Bernardi,Cibele R. Bonvicino,Sydney Brenner,Terry Burke,Joel Cracraft,Mark Diekhans,Scott V. Edwards,Per G. P. Ericson,James A. Estes,Jon Fjelsda,Nate Flesness,Tony Gamble,Philippe Gaubert,Alexander S. Graphodatsky,Jennifer A. Marshall Graves,Erik D. Green,Richard E. Green,Shannon J. Hackett,Paul D. N. Hebert,Kristofer M. Helgen,Leo Joseph,Bailey Kessing,David M. Kingsley,Harris A. Lewin,Gordon Luikart,Paola Martelli,Miguel A. M. Moreira,Ngan Nguyen,Guillermo Ortí,Brian L. Pike,David M. Rawson,Stephan C. Schuster,Héctor N. Seuánez,H. Bradley Shaffer,Mark S. Springer,Joshua M. Stuart,Joanna Sumner,Emma C. Teeling,Robert C. Vrijenhoek,Robert D. Ward,Wesley C. Warren,Robert K. Wayne,Terrie M. Williams,Nathan D. Wolfe,Ya-Ping Zhang,Adam Felsenfeld,Steve Turner +69 more
TL;DR: A precipitous drop in costs and increase in sequencing efficiency is anticipated, with concomitant development of improved annotation technology, and it is proposed to create a collection of tissue and DNA specimens for 10,000 vertebrate species specifically designated for whole-genome sequencing in the very near future.
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