World Endometriosis Research Foundation Endometriosis Phenome and Biobanking Harmonization Project: III. Fluid biospecimen collection, processing, and storage in endometriosis research
Nilufer Rahmioglu,Amelie Fassbender,Allison F. Vitonis,Shelley S. Tworoger,Shelley S. Tworoger,Lone Hummelshoj,Thomas D'Hooghe,G. David Adamson,Linda C. Giudice,Christian M. Becker,Krina T. Zondervan,Krina T. Zondervan,Stacey A. Missmer,G.D. Adamson,Catherine Allaire,R. Anchan,Christian M. Becker,Mohamed A. Bedaiwy,G.M. Buck Louis,C. Calhaz-Jorge,K. Chwalisz,Thomas D'Hooghe,A. Fassbender,T. Faustmann,Asgerally T. Fazleabas,Idhaliz Flores,Axel Forman,Ian S. Fraser,L.C. Giudice,Martin Götte,P. Gregersen,S.-W. Guo,T. Harada,D. Hartwell,Andrew W Horne,M.L. Hull,L. Hummelshoj,Mohamed Ibrahim,Ludwig Kiesel,Marc R. Laufer,K. Machens,S. Mechsner,S.A. Missmer,Grant W. Montgomery,A. Nap,Mette Nyegaard,K.G. Osteen,C.A. Petta,N. Rahmioglu,S.P. Renner,J. Riedlinger,S. Roehrich,Peter Rogers,Luk Rombauts,Andres Salumets,E. Saridogan,Tamer Seckin,Pamela Stratton,Kathy L. Sharpe-Timms,S. Tworoger,Paola Viganò,Katy Vincent,A.F. Vitonis,U.-H. Wienhues-Thelen,P.P. Yeung,Paul J. Yong,K.T. Zondervan,K.T. Zondervan +67 more
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TLDR
The Endometriosis Phenome and Biobanking Harmonization Project (EPhect) as discussed by the authors harmonizes standard operating procedures (SOPs) and standardizes the recording of associated data for collection, processing, and storage of fluid biospecimens relevant to endometria.About:
This article is published in Fertility and Sterility.The article was published on 2014-11-01 and is currently open access. It has received 146 citations till now. The article focuses on the topics: Sample collection.read more
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Journal ArticleDOI
Cancer-Associated Mutations in Endometriosis without Cancer
Michael S. Anglesio,Nickolas Papadopoulos,Ayse Ayhan,Tayyebeh M. Nazeran,Michaël Noë,Hugo M. Horlings,Amy Lum,Siân Jones,Janine Senz,Tamer Seckin,Julie Ho,Ren-Chin Wu,Vivian Lac,Hiroshi Ogawa,Basile Tessier-Cloutier,Rami Alhassan,Amy Wang,Yuxuan Wang,Joshua D. Cohen,Fontayne Wong,Adnan Hasanovic,Natasha L. Orr,Ming Zhang,Maria Popoli,Wyatt Mcmahon,Laura D. Wood,Austin Mattox,Catherine Allaire,James H. Segars,Christina Williams,Cristian Tomasetti,Niki Boyd,Kenneth W. Kinzler,C. Blake Gilks,Luis A. Diaz,Tian Li Wang,Bert Vogelstein,Paul J. Yong,David G. Huntsman,Ie Ming Shih +39 more
TL;DR: It is found that lesions in deep infiltrating endometriosis, which are associated with virtually no risk of malignant transformation, harbor somatic cancer driver mutations.
Journal ArticleDOI
World Endometriosis Society consensus on the classification of endometriosis
Neil P. Johnson,Lone Hummelshoj,G. David Adamson,Jörg Keckstein,Hugh S. Taylor,Mauricio Simões Abrão,Deborah Bush,Ludwig Kiesel,Rulla M. Tamimi,Kathy L. Sharpe-Timms,Luk Rombauts,Linda C. Giudice +11 more
TL;DR: An international consensus statement on the classification of endometriosis is produced through systematic appraisal of evidence and a consensus process that included representatives of national and international, medical and non-medical societies, patient organizations, and companies with an interest in endometiosis.
Journal ArticleDOI
Blood biomarkers for the non‐invasive diagnosis of endometriosis
Vicki Nisenblat,Patrick M.M. Bossuyt,Rabia Shaikh,Cindy Farquhar,Vanessa Jordan,Carola S. Scheffers,Ben W.J. Mol,Neil P. Johnson,M. Louise Hull +8 more
TL;DR: This is the first review to use Cochrane methods to evaluate blood biomarkers as replacement tests for diagnostic surgery and as triage tests to inform decisions on surgery for endometriosis, providing an update on the rapidly expanding literature in this field.
Journal ArticleDOI
The endometrial immune environment of women with endometriosis.
TL;DR: P phenotyping immune cell subtypes is essential to determine the role of the endometrial immune niche in pregnancy and endometrium homeostasis normally and in women with poor reproductive history and can facilitate development of innovative diagnostics and therapeutics for associated symptoms and compromised reproductive outcomes.
Journal ArticleDOI
Fertile ground: human endometrial programming and lessons in health and disease
Jemma Evans,Lois A. Salamonsen,Lois A. Salamonsen,Amy Winship,Amy Winship,Ellen Menkhorst,Ellen Menkhorst,Guiying Nie,Guiying Nie,Caroline E. Gargett,Eva Dimitriadis,Eva Dimitriadis +11 more
TL;DR: The development of biomarkers for prediction of uterine diseases and pregnancy disorders and future avenues of investigation to improve fertility and enhance endometrial function are discussed.
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White,Olufunmilayo I. Olopade,Chunqing Luo,Yaqin Chen,Ron Bose,Li-Wei Chang,Andrew H. Beck,Todd Pihl,Mark A. Jensen,Robert Sfeir,Ari B. Kahn,Anna Chu,Prachi Kothiyal,Zhining Wang,Eric E. Snyder,Joan Pontius,Brenda Ayala,Mark Backus,Jessica Walton,Julien Baboud,Dominique L. Berton,Matthew C. Nicholls,Deepak Srinivasan,Rohini Raman,Stanley Girshik,Peter A. Kigonya,Shelley Alonso,Rashmi N. Sanbhadti,Sean P. Barletta,David Pot,Margi Sheth,John A. Demchok,Kenna R. Mills Shaw,Liming Yang,Greg Eley,Martin L. Ferguson,Roy Tarnuzzer,Jiashan Zhang,Laura A.L. Dillon,Kenneth H. Buetow,Peter Fielding,Bradley A. Ozenberger,Mark S. Guyer,Heidi J. Sofia,Jacqueline D. Palchik +355 more
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The Genotype-Tissue Expression (GTEx) project
John T. Lonsdale,Jeffrey Thomas,Mike Salvatore,Rebecca Phillips,Edmund Lo,Saboor Shad,Richard Hasz,Gary Walters,Fernando U. Garcia,Nancy Young,Barbara A. Foster,Mike Moser,Ellen Karasik,Bryan Gillard,Kimberley Ramsey,Susan L. Sullivan,Jason Bridge,Harold Magazine,John Syron,Johnelle Fleming,Laura A. Siminoff,Heather M. Traino,Maghboeba Mosavel,Laura Barker,Scott D. Jewell,Daniel C. Rohrer,Dan Maxim,Dana Filkins,Philip Harbach,Eddie Cortadillo,Bree Berghuis,Lisa Turner,Eric Hudson,Kristin Feenstra,Leslie H. Sobin,James A. Robb,Phillip Branton,Greg E. Korzeniewski,Charles Shive,David Tabor,Liqun Qi,Kevin Groch,Sreenath Nampally,Steve Buia,Angela Zimmerman,Anna M. Smith,Robin Burges,Karna Robinson,Kim Valentino,Deborah Bradbury,Mark Cosentino,Norma Diaz-Mayoral,Mary Kennedy,Theresa Engel,Penelope Williams,Kenyon Erickson,Kristin G. Ardlie,Wendy Winckler,Gad Getz,Gad Getz,David S. DeLuca,MacArthur Daniel MacArthur,MacArthur Daniel MacArthur,Manolis Kellis,Alexander Thomson,Taylor Young,Ellen Gelfand,Molly Donovan,Yan Meng,George B. Grant,Deborah C. Mash,Yvonne Marcus,Margaret J. Basile,Jun Liu,Jun Zhu,Zhidong Tu,Nancy J. Cox,Dan L. Nicolae,Eric R. Gamazon,Hae Kyung Im,Anuar Konkashbaev,Jonathan K. Pritchard,Jonathan K. Pritchard,Matthew Stevens,Timothée Flutre,Xiaoquan Wen,Emmanouil T. Dermitzakis,Tuuli Lappalainen,Roderic Guigó,Jean Monlong,Michael Sammeth,Daphne Koller,Alexis Battle,Sara Mostafavi,Mark I. McCarthy,Manual Rivas,Julian Maller,Ivan Rusyn,Andrew B. Nobel,Fred A. Wright,Andrey A. Shabalin,Mike Feolo,Nataliya Sharopova,Anne Sturcke,Justin Paschal,James M. Anderson,Elizabeth L. Wilder,Leslie Derr,Eric D. Green,Jeffery P. Struewing,Gary F. Temple,Simona Volpi,Joy T. Boyer,Elizabeth J. Thomson,Mark S. Guyer,Cathy Ng,Assya Abdallah,Deborah Colantuoni,Thomas R. Insel,Susan E. Koester,Roger Little,Patrick Bender,Thomas Lehner,Yin Yao,Carolyn C. Compton,Jimmie B. Vaught,Sherilyn Sawyer,Nicole C. Lockhart,Joanne P. Demchok,Helen F. Moore +129 more
TL;DR: The Genotype-Tissue Expression (GTEx) project is described, which will establish a resource database and associated tissue bank for the scientific community to study the relationship between genetic variation and gene expression in human tissues.
Journal ArticleDOI
Laser Capture Microdissection
Michael R. Emmert-Buck,Robert F. Bonner,Paul D. Smith,Rodrigo F. Chuaqui,Zhengping Zhuang,Seth R. Goldstein,Rhonda A. Weiss,Lance A. Liotta +7 more
TL;DR: Laser capture microdissection under direct microscopic visualization permits rapid one-step procurement of selected human cell populations from a section of complex, heterogeneous tissue.
Journal ArticleDOI
ARID1A mutations in endometriosis-associated ovarian carcinomas.
Kimberly C. Wiegand,Sohrab P. Shah,Osama M. Al-Agha,Yongjun Zhao,Kane Tse,Thomas Zeng,Janine Senz,Melissa K. McConechy,Michael S. Anglesio,Steve E. Kalloger,Winnie Yang,Alireza Heravi-Moussavi,Ryan Giuliany,Christine Chow,John Fee,Abdalnasser Zayed,Leah M Prentice,Nataliya Melnyk,Gulisa Turashvili,Allen Delaney,Jason Madore,Stephen Yip,Andrew McPherson,Gavin Ha,Lynda Bell,Sian Fereday,Angela Tam,Laura Galletta,Patricia N. Tonin,Diane Provencher,Dianne Miller,Steven J.M. Jones,Richard A. Moore,Gregg B. Morin,Gregg B. Morin,Arusha Oloumi,Niki Boyd,Samuel Aparicio,Ie Ming Shih,Anne Marie Mes-Masson,David D.L. Bowtell,David D.L. Bowtell,Martin Hirst,Blake Gilks,Marco A. Marra,Marco A. Marra,David G. Huntsman +46 more
TL;DR: These data implicate ARID1A as a tumor-suppressor gene frequently disrupted in ovarian clear-cell and endometrioid carcinomas.
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