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Showing papers by "CABI published in 2012"


Journal ArticleDOI
TL;DR: Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation.
Abstract: Six DNA regions were evaluated as potential DNA barcodes for Fungi, the second largest kingdom of eukaryotic life, by a multinational, multilaboratory consortium. The region of the mitochondrial cytochrome c oxidase subunit 1 used as the animal barcode was excluded as a potential marker, because it is difficult to amplify in fungi, often includes large introns, and can be insufficiently variable. Three subunits from the nuclear ribosomal RNA cistron were compared together with regions of three representative protein-coding genes (largest subunit of RNA polymerase II, second largest subunit of RNA polymerase II, and minichromosome maintenance protein). Although the protein-coding gene regions often had a higher percent of correct identification compared with ribosomal markers, low PCR amplification and sequencing success eliminated them as candidates for a universal fungal barcode. Among the regions of the ribosomal cistron, the internal transcribed spacer (ITS) region has the highest probability of successful identification for the broadest range of fungi, with the most clearly defined barcode gap between inter- and intraspecific variation. The nuclear ribosomal large subunit, a popular phylogenetic marker in certain groups, had superior species resolution in some taxonomic groups, such as the early diverging lineages and the ascomycete yeasts, but was otherwise slightly inferior to the ITS. The nuclear ribosomal small subunit has poor species-level resolution in fungi. ITS will be formally proposed for adoption as the primary fungal barcode marker to the Consortium for the Barcode of Life, with the possibility that supplementary barcodes may be developed for particular narrowly circumscribed taxonomic groups.

4,116 citations


Journal ArticleDOI
TL;DR: It is shown that there is no universal measure of impact and the pattern observed depends on the ecological measure examined, and some species traits, especially life form, stature and pollination syndrome, may provide a means to predict impact, regardless of the particular habitat and geographical region invaded.
Abstract: With the growing body of literature assessing the impact of invasive alien plants on resident species and ecosystems, a comprehensive assessment of the relationship between invasive species traits and environmental settings of invasion on the characteristics of impacts is needed. Based on 287 publications with 1551 individual cases that addressed the impact of 167 invasive plant species belonging to 49 families, we present the first global overview of frequencies of significant and non-significant ecological impacts and their directions on 15 outcomes related to the responses of resident populations, species, communities and ecosystems. Species and community outcomes tend to decline following invasions, especially those for plants, but the abundance and richness of the soil biota, as well as concentrations of soil nutrients and water, more often increase than decrease following invasion. Data mining tools revealed that invasive plants exert consistent significant impacts on some outcomes (survival of resident biota, activity of resident animals, resident community productivity, mineral and nutrient content in plant tissues, and fire frequency and intensity), whereas for outcomes at the community level, such as species richness, diversity and soil resources, the significance of impacts is determined by interactions between species traits and the biome invaded. The latter outcomes are most likely to be impacted by annual grasses, and by wind pollinated trees invading mediterranean or tropical biomes. One of the clearest signals in this analysis is that invasive plants are far more likely to cause significant impacts on resident plant and animal richness on islands rather than mainland. This study shows that there is no universal measure of impact and the pattern observed depends on the ecological measure examined. Although impact is strongly context dependent, some species traits, especially life form, stature and pollination syndrome, may provide a means to predict impact, regardless of the particular habitat and geographical region invaded.

1,067 citations


Journal ArticleDOI
Ward Appeltans1, Shane T. Ahyong2, Shane T. Ahyong3, Gary L. Anderson4, Martin V. Angel5, Tom Artois6, Nicolas Bailly7, Roger N. Bamber, Anthony Barber, Ilse Bartsch8, Annalisa Berta9, Magdalena Błażewicz-Paszkowycz, Phil Bock10, Geoff A. Boxshall11, Christopher B. Boyko12, Simone N. Brandão13, R. A. Bray11, Niel L. Bruce14, Niel L. Bruce15, Stephen D. Cairns16, Tin-Yam Chan17, Lanna Cheng18, Allen Gilbert Collins19, Thomas H. Cribb20, Marco Curini-Galletti21, Farid Dahdouh-Guebas22, Farid Dahdouh-Guebas23, Peter J. F. Davie24, Michael N Dawson25, Olivier De Clerck26, Wim Decock1, Sammy De Grave8, Nicole J. de Voogd27, Daryl P. Domning28, Christian C. Emig, Christer Erséus29, William N. Eschmeyer30, William N. Eschmeyer31, Kristian Fauchald16, Daphne G. Fautin8, Stephen W. Feist32, Charles H. J. M. Fransen27, Hidetaka Furuya33, Óscar García-Álvarez34, Sarah Gerken35, David I. Gibson11, Arjan Gittenberger27, Serge Gofas36, Liza Gómez-Daglio25, Dennis P. Gordon37, Michael D. Guiry38, Francisco Hernandez1, Bert W. Hoeksema27, Russell R. Hopcroft39, Damià Jaume40, Paul M. Kirk41, Nico Koedam22, Stefan Koenemann42, Jürgen B. Kolb43, Reinhardt Møbjerg Kristensen44, Andreas Kroh45, Gretchen Lambert46, David Lazarus47, Rafael Lemaitre16, Matt Longshaw32, Jim Lowry2, Enrique Macpherson40, Laurence P. Madin48, Christopher L. Mah16, Gill Mapstone11, Patsy A. McLaughlin49, Jan Mees26, Jan Mees1, Kenneth Meland50, Charles G. Messing51, Claudia E. Mills46, Tina N. Molodtsova52, Rich Mooi30, Birger Neuhaus47, Peter K. L. Ng53, Claus Nielsen44, Jon L. Norenburg16, Dennis M. Opresko16, Masayuki Osawa54, Gustav Paulay31, William F. Perrin19, John F. Pilger55, Gary C. B. Poore10, P.R. Pugh5, Geoffrey B. Read37, James Davis Reimer56, Marc Rius57, Rosana M. Rocha58, J.I. Saiz-Salinas59, Victor Scarabino, Bernd Schierwater60, Andreas Schmidt-Rhaesa13, Kareen E. Schnabel37, Marilyn Schotte16, Peter Schuchert, Enrico Schwabe, Hendrik Segers61, Caryn Self-Sullivan51, Noa Shenkar62, Volker Siegel, Wolfgang Sterrer8, Sabine Stöhr63, Billie J. Swalla46, Mark L. Tasker64, Erik V. Thuesen65, Tarmo Timm66, M. Antonio Todaro, Xavier Turon40, Seth Tyler67, Peter Uetz68, Jacob van der Land27, Bart Vanhoorne1, Leen van Ofwegen27, Rob W. M. Van Soest27, Jan Vanaverbeke26, Genefor Walker-Smith10, T. Chad Walter16, Alan Warren11, Gary C. Williams30, Simon P. Wilson69, Mark J. Costello70 
Flanders Marine Institute1, Australian Museum2, University of New South Wales3, University of Southern Mississippi4, National Oceanography Centre, Southampton5, University of Hasselt6, WorldFish7, American Museum of Natural History8, San Diego State University9, Museum Victoria10, Natural History Museum11, Dowling College12, University of Hamburg13, James Cook University14, University of Johannesburg15, National Museum of Natural History16, National Taiwan Ocean University17, Scripps Institution of Oceanography18, National Oceanic and Atmospheric Administration19, University of Queensland20, University of Sassari21, Vrije Universiteit Brussel22, Université libre de Bruxelles23, Queensland Museum24, University of California, Merced25, Ghent University26, Naturalis27, Howard University28, University of Gothenburg29, California Academy of Sciences30, Florida Museum of Natural History31, Centre for Environment, Fisheries and Aquaculture Science32, Osaka University33, University of Santiago de Compostela34, University of Alaska Anchorage35, University of Málaga36, National Institute of Water and Atmospheric Research37, National University of Ireland, Galway38, University of Alaska Fairbanks39, Spanish National Research Council40, CABI41, University of Siegen42, Massey University43, University of Copenhagen44, Naturhistorisches Museum45, University of Washington46, Museum für Naturkunde47, Woods Hole Oceanographic Institution48, Western Washington University49, University of Bergen50, Nova Southeastern University51, Shirshov Institute of Oceanology52, National University of Singapore53, Shimane University54, Agnes Scott College55, University of the Ryukyus56, University of California, Davis57, Federal University of Paraná58, University of the Basque Country59, University of Veterinary Medicine Hanover60, Royal Belgian Institute of Natural Sciences61, Tel Aviv University62, Swedish Museum of Natural History63, Joint Nature Conservation Committee64, The Evergreen State College65, Estonian University of Life Sciences66, University of Maine67, Virginia Commonwealth University68, Trinity College, Dublin69, University of Auckland70
TL;DR: The first register of the marine species of the world is compiled and it is estimated that between one-third and two-thirds of marine species may be undescribed, and previous estimates of there being well over one million marine species appear highly unlikely.

822 citations


Journal ArticleDOI
TL;DR: This study compares the distribution and abundance of formerly common and widespread native ladybirds before and after the arrival of Harmonia axyridis, a globally rapidly expanding IAS.
Abstract: Aim Invasive alien species (IAS) are recognized as major drivers of biodiversity loss, but few causal relationships between IAS and species declines have been documented. In this study, we compare the distribution (Belgium and Britain) and abundance (Belgium, Britain and Switzerland) of formerly common and widespread native ladybirds before and after the arrival of Harmonia axyridis, a globally rapidly expanding IAS

269 citations


Journal ArticleDOI
TL;DR: The Chrysomelidae and Curculionidae families were the most effective agents and it is recommended these be prioritized in cases where potential agents of different taxa have also been identified.
Abstract: Summary Invasive alien plants have serious economic and ecological impacts, for example, by displacing native plants and invertebrates, and their management is often costly and ineffective in the long term. Classical biological control using specialized, coevolved natural enemies from the native region of the invader is often advocated as a preferred alternative to chemical and mechanical control, but there is a lack of quantitative assessment of control of the target species and subsequent establishment of native vegetation and invertebrates. Meta-analyses were carried out combining the results of 61 published studies (2000–2011) that quantified the impact of classical biocontrol at the level of individual target plants, target populations or non-target vegetation. Factors associated with the control programmes (invasive region, native region, plant growth form, target longevity, control agent guild, taxonomy and study duration) were analysed to identify patterns in control success. On average, biocontrol agents significantly reduced plant size (28 ± 4%), plant mass (37 ± 4%), flower and seed production (35 ± 13% and 42 ± 9%, respectively) and target plant density (56 ± 7%). Beetles in the Chrysomelidae and Curculionidae families were more effective at reducing plant size than other groups. Non-target plant diversity significantly increased by 88 ± 31% at sites where biocontrol agents were released, but it was largely unclear whether the replacement plant species were native or invasive. Synthesis and applications. The number of studies that provide quantitative indications of the effectiveness of biocontrol and the response of non-target taxa has increased over the past decade, but remains small compared to the total number of publications on the classical biocontrol of invasive plants. Nonetheless, this study demonstrates the positive impacts of classical biocontrol and the re-establishment of native plants in a broad range of systems and establishes the value of classical biocontrol for the control of invasive alien plants. The Chrysomelidae and Curculionidae families were the most effective agents and we recommend these be prioritized in cases where potential agents of different taxa have also been identified. In addition, data on the recovery of native plant species and the invertebrate community remain sparse and it is recommended that future studies report the identity of plant species that replace target species as well as invertebrate community responses.

104 citations


Journal ArticleDOI
TL;DR: This research integrates an analysis of longitudinal dietary data with qualitative data on barriers to improved child feeding to identify the nature and extent of the barriers caregivers face to improving IYCF practices in a farming region of the Bolivian Andes, and to determine the relative influence of these barriers on caregivers' abilities to improve IY CF practices.

87 citations


Journal ArticleDOI
TL;DR: A review of the current broad systematic and ecological findings for the non-lichenized Antarctic fungi suggests that the true diversity may be far greater than is currently estimated.

79 citations


Journal ArticleDOI
R. W. Rees1, J. Flood2, Y. Hasan, Mary A. Wills1, Richard M. Cooper1 
TL;DR: It is evident that basidiospores play a major role in spread and genetic variability of G. boninense, cause of basal stem rot and upper stem rot of oil palm.
Abstract: Basidiospores are implicated in the distribution and genetic diversity of Ganoderma boninense, cause of basal stem rot (BSR) and upper stem rot (USR) of oil palm (Elaeis guineensis). Measurement of aerial basidiospores within plantations in Sumatra showed continuous and high production over 24 h (range c. 2–11 000 spores m−3) with maximum release during early evening. Basidiospores applied to cut surfaces of fronds, peduncles and stems germinated in situ. Equivalent, extensive wounds are created during plantation harvesting and management and represent potential sites for formation of infective heterokaryons following mating of haploid basidiospore germlings. Use of spore-sized micro-beads showed that basidiospores could be pulled up to 10 cm into severed xylem vessels, where they are relatively protected from dehydration, UV irradiation and competing microflora. Diversity of isolates from five locations on two plantations was assessed by RAMS fingerprinting. Isolates from within individual palms with USR were identical and represent single infections, but different USR infections had unique band patterns and revealed separate infections. Some BSR-affected trees contained more than one isolate, and thus had multiple infections. There was one example of adjacent BSR palms with the same isolate, indicating vegetative spread, but there were no identical genets from BSR infections and adjacent fallen palms. Isolate diversity was as great within a plantation as between plantations. It is evident that basidiospores play a major role in spread and genetic variability of G. boninense. Evidence for direct basidiospore infection via cut fronds, indirectly through roots via colonized debris and less frequently, infection by vegetative, clonal spread is considered.

77 citations


Journal ArticleDOI
09 Oct 2012-PLOS ONE
TL;DR: A set of four simple and generic spread models that can be parameterised with limited data provide a transparent and objective tool for evaluating the potential spread of pests in PRAs and are found generally credible and useful.
Abstract: Pest Risk Analyses (PRAs) are conducted worldwide to decide whether and how exotic plant pests should be regulated to prevent invasion. There is an increasing demand for science-based risk mapping in PRA. Spread plays a key role in determining the potential distribution of pests, but there is no suitable spread modelling tool available for pest risk analysts. Existing models are species specific, biologically and technically complex, and data hungry. Here we present a set of four simple and generic spread models that can be parameterised with limited data. Simulations with these models generate maps of the potential expansion of an invasive species at continental scale. The models have one to three biological parameters. They differ in whether they treat spatial processes implicitly or explicitly, and in whether they consider pest density or pest presence/absence only. The four models represent four complementary perspectives on the process of invasion and, because they have different initial conditions, they can be considered as alternative scenarios. All models take into account habitat distribution and climate. We present an application of each of the four models to the western corn rootworm, Diabrotica virgifera virgifera, using historic data on its spread in Europe. Further tests as proof of concept were conducted with a broad range of taxa (insects, nematodes, plants, and plant pathogens). Pest risk analysts, the intended model users, found the model outputs to be generally credible and useful. The estimation of parameters from data requires insights into population dynamics theory, and this requires guidance. If used appropriately, these generic spread models provide a transparent and objective tool for evaluating the potential spread of pests in PRAs. Further work is needed to validate models, build familiarity in the user community and create a database of species parameters to help realize their potential in PRA practice.

76 citations


Journal ArticleDOI
TL;DR: It is concluded that endophytes have significant effects on foliar feeding insects that differ with degree of specialism of the herbivore, and suggested that these effects are due to chemical changes in the host, brought about by fungal infection.
Abstract: Foliar endophytic fungi appear to be ubiquitous in nature, occurring in a very wide range of herbaceous plants. However, their ecological role within forbs is very poorly known and interactions with foliar-feeding insects virtually unexplored. In this study, leaves of Cirsium arvense were infected with different combinations of endophyte fungi that had been previously isolated from this plant species. Two months later, leaf material was fed to larvae of a generalist insect, Mamestra brassicae, and adults of a specialist feeder, Cassida rubiginosa. Endophytes had different effects on the two insects; one species, Chaetomium cochliodes, reduced growth of M. brassicae but increased feeding by C. rubiginosa. Another species, Cladosporium cladosporioides, increased beetle feeding also, but had no effect on M. brassicae. Interactions were also seen between fungal species and dual infection with C. cladosporioides and Trichoderma viride greatly reduced beetle feeding. It is concluded that endophytes have significant effects on foliar feeding insects that differ with degree of specialism of the herbivore. We suggest that these effects are due to chemical changes in the host, brought about by fungal infection. These fungi have received remarkably little attention in the study of insect–plant interactions and yet could be important determinants of insect growth and even population dynamics.

74 citations


Journal ArticleDOI
TL;DR: Post‐introduction climatic adaptation in a population of Longitarsus jacobaeae, a biological control agent of Jacobaea vulgaris, is assessed, indicating that the beetles at Mt. Hood have adapted to the cooler conditions by life‐history changes that conform to predictions based on theory and the phenology of the cold‐adapted Swiss beetles.
Abstract: Rapid evolution has rarely been assessed in biological control systems despite the similarity with biological invasions, which are widely used as model systems. We assessed post-introduction climatic adaptation in a population of Longitarsus jacobaeae, a biological control agent of Jacobaea vulgaris, which originated from a low-elevation site in Italy and was introduced in the USA to a high-elevation site (Mt. Hood, Oregon) in the early 1980s. Life-history characteristics of beetle populations from Mt. Hood, from two low-elevation sites in Oregon (Italian origin) and from a high-elevation site from Switzerland were compared in common gardens. The performance of low- and high-elevation populations at a low- and a high-elevation site was evaluated using reciprocal transplants. The results revealed significant changes in aestival diapause and shifts in phenology in the Mt. Hood population, compared with the low-elevation populations. We found increased performance of the Mt. Hood population in its home environment compared with the low-elevation populations that it originated from. The results indicate that the beetles at Mt. Hood have adapted to the cooler conditions by life-history changes that conform to predictions based on theory and the phenology of the cold-adapted Swiss beetles.

Journal ArticleDOI
TL;DR: One Phomopsis isolate--closely related to Diaporthe medusaea, based on ITS sequences--promoted the pathogenic aggressiveness of P. polygoni-amphibii var.

Journal ArticleDOI
TL;DR: Investigating hybrids between a Swiss and an Italian population of the beetle and a biological control agent of Jacobaea vulgaris found that the increased fecundity of hybrids may benefit tansy ragwort biological control by increasing the establishment success and facilitating a more rapid population buildup in the early generations.
Abstract: Hybridization is an important evolutionary mechanism that can increase the fitness and adaptive potential of populations. A growing body of evidence supports its importance as a key factor contributing to rapid evolution in invasive species, but the effects of hybridization have rarely been assessed in intentionally introduced biological control agents. We investigated hybrids between a Swiss and an Italian population of the beetle, Longitarsus jacobaeae, a biological control agent of Jacobaea vulgaris, by reciprocally crossing individuals in the laboratory. Phenological traits of F1 and F2 hybrid lineages showed intermediate values relative to their parental populations, with some maternal influence. Fitness of the F2 generation, measured as lifetime fecundity, was higher than that of the Italian parent in one of the lineages and higher than that of either parent in the other hybrid lineage. The increased fecundity of hybrids may benefit tansy ragwort biological control by increasing the establishment success and facilitating a more rapid population buildup in the early generations. Even though the long-term consequences of hybridization in this and other systems are hard to predict, intentional hybridization may be a useful tool in biological control strategies as it would promote similar microevolutionary processes operating in numerous targeted invasive species.

Journal ArticleDOI
TL;DR: New protocols have been developed in the framework of the EC project PRATIQUE to provide guidance on environmental impact assessment in the EPPO pest risk analysis (PRA) decision-support scheme and enhance consistency between risk assessors and risk ratings for different pests.
Abstract: Assessing the potential environmental impact of alien plants and plant pests is notoriously difficult. New protocols have been developed in the framework of the EC project PRATIQUE to provide guidance on environmental impact assessment in the EPPO pest risk analysis (PRA) decision-support scheme and enhance consistency between risk assessors and risk ratings for different pests. A set of questions with rating guidance and examples is provided, and individual scores are summarized into final scores, using a hierarchy of risk matrices, to assess current and potential environmental impacts. Two separate protocols are available: for alien plants and for other pests. These protocols could also be used to assess environmental impact in other PRA schemes as well as to assign alien species to regional black lists or to prioritize species for management decisions.

Journal ArticleDOI
TL;DR: Local scale measurements do not represent all patterns of Acroptilon distribution and abundance that might exist at the scale of landscapes in either range, but they suggest the possibility of fundamental biogeographic differences in the way a highly successful invader interacts with other species, differences that are not simply related to greater biomass or reduced top–down regulation of the invader in its non-native range.
Abstract: Concern over exotic invasions is fueled in part by the observation that some exotic species appear to be more abundant and have stronger impacts on other species in their non-native ranges than in their native ranges. Past studies have addressed biogeographic differences in abundance, productivity, biomass, density and demography between plants in their native and non-native ranges, but despite widespread observations of biogeographic differences in impact these have been virtually untested. In a comparison of three sites in each range, we found that the abundance of Acroptilon repens in North America where it is invasive was almost twice that in Uzbekistan where it is native. However, this difference in abundance translated to far greater differences between regions in the apparent impacts of Acroptilon on native species. The biomass of native species in Acroptilon stands was 25–30 times lower in the non-native range than in the native range. Experimental addition of native species as seeds significantly increased the abundance of natives at one North American site, but the proportion of native biomass even with seed addition remained over an order of magnitude lower than that of native species in Acroptilon stands in Uzbekistan. Experimental disturbance had no long-term effect on Acroptilon abundance or impact in North America, but Acroptilon increased slightly in abundance after disturbance in Uzbekistan. In a long-term experiment in Uzbekistan, suppression of invertebrate herbivores and pathogens did not result in either consistent increases in Acroptilon biomass across years or declines in the biomass of other native species, as one might expect if the low impact of Acroptilon in the native range was due to its strong top–down regulation by natural enemies. Our local scale measurements do not represent all patterns of Acroptilon distribution and abundance that might exist at the scale of landscapes in either range, but they do suggest the possibility of fundamental biogeographic differences in the way a highly successful invader interacts with other species, differences that are not simply related to greater biomass or reduced top–down regulation of the invader in its non-native range.

Journal ArticleDOI
David Smith1, M.J. Ryan
TL;DR: Quality management options and cryopreservation of fungi are discussed, describing how the reproducibility and quality of the technique is maintained in order to retain the full potential of fungi.
Abstract: Authentic, well preserved living organisms are basic elements for research in the life sciences and biotechnology. They are grown and utilized in laboratories around the world and are key to many research programmes, industrial processes and training courses. They are vouchers for publications and must be available for confirmation of results, further study or reinvestigation when new technologies become available. These biological resources must be maintained without change in biological resource collections. In order to achieve best practice in the maintenance and provision of biological materials for industry, research and education the appropriate standards must be followed. Cryopreservation is often the best preservation method available to achieve these aims, allowing long term, stable storage of important microorganisms. To promulgate best practice the Organisation for Economic Development and Co-operation (OECD published the best practice guidelines for BRCs. The OECD best practice consolidated the efforts of the UK National Culture Collections, the European Common Access to Biological Resources and Information (CABRI) project consortium and the World Federation for Culture Collections. The paper discusses quality management options and reviews cryopreservation of fungi, describing how the reproducibility and quality of the technique is maintained in order to retain the full potential of fungi.

Journal ArticleDOI
02 May 2012-PLOS ONE
TL;DR: It is discussed how tropical habitats with high biodiversity of hyperparasites and high spore mortality has likely been crucial for the evolution and maintenance of iteroparity in parasites with low dispersal potential.
Abstract: Coevolution between ant colonies and their rare specialized parasites are intriguing, because lethal infections of workers may correspond to tolerable chronic diseases of colonies, but the parasite adaptations that allow stable coexistence with ants are virtually unknown. We explore the trade-offs experienced by Ophiocordyceps parasites manipulating ants into dying in nearby graveyards. We used field data from Brazil and Thailand to parameterize and fit a model for the growth rate of graveyards. We show that parasite pressure is much lower than the abundance of ant cadavers suggests and that hyperparasites often castrate Ophiocordyceps. However, once fruiting bodies become sexually mature they appear robust. Such parasite life-history traits are consistent with iteroparity– a reproductive strategy rarely considered in fungi. We discuss how tropical habitats with high biodiversity of hyperparasites and high spore mortality has likely been crucial for the evolution and maintenance of iteroparity in parasites with low dispersal potential.

Journal ArticleDOI
TL;DR: Of the interactions and overlaps between these key groups, that between soil invertebrates and BCAs is the most important, and further research is needed to evaluate the scope and impact of manipulation of the soil ecosystem to conserve or encourage beneficial BCAs.
Abstract: This study focuses on three main groups of organisms: soil invertebrates, biological control agents (BCAs) and pollinators. These groups play key roles in agricultural systems, and have the potential to be used, moved or manipulated for the benefit of agriculture. Soil invertebrates are a key component of agricultural landscapes. They participate in essential soil processes that maintain healthy productive soils in the face of changing environmental conditions. Reducing the diversity of a community of soil invertebrates reduces its beneficial functions and services, with drastic ecological effects such as long-term deterioration of soil fertility and agricultural productive capacity. The introduction of a keystone species may have detrimental or beneficial effects depending on the context. The interaction between soil invertebrates and soil microorganisms is critical: the activities of soil invertebrates regulate microbial activity in soils, and micro-organisms enter into intimate relationships with soil invertebrates to help them degrade highly complex compounds such as cellulose. Different groups of invertebrates provide biological control of crop pests. In many situations, they form the basis of, and tools for, the integrated pest management (IPM) approach. Given that the losses caused by pre- and post-harvest pests can be very substantial, the potential benefits of using invertebrates as BCAs are vast, but as yet only partially tapped. The potential for soil invertebrates to assist in this function is still largely unknown. Pollination services by animals, especially by insects, are among the most widespread and important processes that structure ecological communities in both natural and agricultural landscapes. An estimated 60–90% of the world’s flowering plants – including a range of economically important species – depend on insects for pollination. Crop pollination used to be (and often still is) provided by wild pollinators spilling over from natural and semi-natural habitats close to crop fields. This service has generally been free and therefore has received little attention in agricultural management. If wild pollinators are lacking or additional pollination is required, as is the case in many intensive agricultural production systems, farmers in some developed countries can buy or rent managed honeybees or sometimes other species (e.g. bumblebees, alfalfa leafcutter bees and alkali bees). Both options – i.e. use of wild species and managed bees – have recently come under pressure, a development that is sometimes referred to as the ‘pollination crisis’. Of the interactions and overlaps between these key groups, that between soil invertebrates and BCAs is the most important, and further research is needed to evaluate the scope and impact of manipulation of the soil ecosystem to conserve or encourage beneficial BCAs.

Journal ArticleDOI
TL;DR: Investigation of behavioural traits of the European spruce bark beetle and its predators and parasitoids over several consecutive years found that most predatory beetles and flies spent wintertime with their prey under the bark, while most parasitic wasps emerged in fall.
Abstract: Control measures aiming at reducing bark beetle populations and preserving their natural enemies require a sound knowledge on their overwintering and emergence behaviour. These behavioural traits were investigated in univoltine and bivoltine populations of the European spruce bark beetle (Ips typographus [L.], Coleoptera: Scolytinae) and its predators and parasitoids over several consecutive years. In univoltine populations, roughly 50% of the bark beetles left their brood trees in fall together with most parasitoids and some significant predatory flies and beetles. In bivoltine populations, <10% of the second bark beetle generation emerged in fall and the remainder overwintered under the bark of their brood trees. Likewise, most predatory beetles and flies spent wintertime with their prey under the bark, while most parasitic wasps emerged in fall. The spring emergence of bivoltine predatory beetles was found to occur up to 3 weeks earlier than that of I. typographus, while that of the predatory flies and the parasitoids was delayed by up to 1 month. In univoltine populations, the bark beetles emerged several weeks prior to most antagonistic taxa. In the heat year 2003, three I. typographus generations were produced at the lower location, 36% of the third generation emerged in fall, while the proportions of overwintering predators remained largely the same as in previous years. Similar to their host, more parasitoids left their brood trees in fall after warm years. The results show that sanitation felling during winter probably kills most bark beetles in bivoltine populations, but also eliminates many natural enemies. In univoltine populations, sanitation felling might be less detrimental to both I. typographus and natural enemies because a fair fraction of their populations will already have left the trees before cutting. Warmer climates may affect the interactions of bark beetles and natural enemies and thus the impact of control measures. J. Appl. Entomol.

Journal ArticleDOI
20 Apr 2012
TL;DR: The new genus Lectera is described for V. colletotrichoides, and for a further, previously undescribed species with slightly longer conidia and differences in rDNA ITS and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) sequences.
Abstract: Volutella colletotrichoides is shown to belong to the Plectosphaerellaceae rather than the Hypocreales where other species of that genus reside. The new genus Lectera is described for V. colletotrichoides, and for a further, previously undescribed species with slightly longer conidia and differences in rDNA ITS and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) sequences. Lectera species are found to be soil-dwelling organisms associated particularly with species of Fabaceae, and L. colletotrichoides is demonstrated to be a pathogen of Cicer arietinum and other grain legumes.

Journal ArticleDOI
TL;DR: There were significantly higher RPM densities on areca in peak season (May/June) compared to coconut; although significantly more coconut sites were infested with RPM than areca; and interactions were found between temperature, humidity and rainfall and the partitioning of host plant locality showed that where conditions were warmer and drier, RPM density was significantly higher.
Abstract: Field surveys were conducted monthly between December 2008 and July 2009 in Kerala, south-west India to compare the population dynamics of the red palm mite Raoiella indica (RPM) on two host plants Areca catechu and Cocos nucifera during one non-monsoon season when, in general, RPM populations increase. The aim was to examine the effects of host plant, host plant locality and the impact of climatic factors on RPM and related phytoseiid predators. There were significantly higher RPM densities on areca in peak season (May/June) compared to coconut; although significantly more coconut sites were infested with RPM than areca. Although no one climatic factor was significantly related to RPM numbers, interactions were found between temperature, humidity and rainfall and the partitioning of host plant locality showed that where conditions were warmer and drier, RPM densities were significantly higher. Specifically on coconut, there was a significant relation between RPM densities and the combined interaction between site temperature, site humidity and phytoseiid densities. There was a marked difference in the density of phytoseiids collected between areca and coconut palms, with significantly more on the latter, in several months. Amblyseius largoensis was the most commonly collected phytoseiid in association with RPM, although Amblyseius tamatavensis species group and Amblyseius largoensis species group were collected in association with RPM also. There was also evidence of a weak numerical response of the combined phytoseiid complex in relation to RPM density the previous month on coconut but this was not observed on areca.

Journal ArticleDOI
26 Nov 2012-PLOS ONE
TL;DR: It is demonstrated that geographic contact between the invasive outbreaks in North-West Italy and Central and South-Eastern Europe resulted in a zone of admixture, with particular characteristics, in the Italian region of Veneto.
Abstract: The western corn rootworm, Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae), is one of the most destructive pests of corn in North America and is currently invading Europe. The two major invasive outbreaks of rootworm in Europe have occurred, in North-West Italy and in Central and South-Eastern Europe. These two outbreaks originated from independent introductions from North America. Secondary contact probably occurred in North Italy between these two outbreaks, in 2008. We used 13 microsatellite markers to conduct a population genetics study, to demonstrate that this geographic contact resulted in a zone of admixture in the Italian region of Veneto. We show that i) genetic variation is greater in the contact zone than in the parental outbreaks; ii) several signs of admixture were detected in some Venetian samples, in a Bayesian analysis of the population structure and in an approximate Bayesian computation analysis of historical scenarios and, finally, iii) allelic frequency clines were observed at microsatellite loci. The contact between the invasive outbreaks in North-West Italy and Central and South-Eastern Europe resulted in a zone of admixture, with particular characteristics. The evolutionary implications of the existence of a zone of admixture in Northern Italy and their possible impact on the invasion success of the western corn rootworm are discussed.

Book ChapterDOI
David Smith1
TL;DR: The links to information sources given not only provide support for the practitioners within collections but also provide guidance to users on accessing the huge resource available and how they can help ensure microbiology has the resources and a solid platform for future development.
Abstract: Culture collections no matter their size, form, or institutional objectives play a role in underpinning microbiology, supplying the resources for study, innovation, and discovery. Their basic roles include providing a mechanism for ex situ conservation of organisms; they are repositories for strains subject to publication, taking in safe, confidential, and patent deposits from researchers. They supply strains for use; therefore, the microorganisms provided must be authentic and preserved well, and any associated information must be valid and sufficient to facilitate the confirmation of their identity and to facilitate their use. The organisms must be collected in compliance with international conventions, international and national legislation and distributed to users indicating clearly the terms and conditions under which they are received and can be used. Collections are harmonizing approaches and characterizing strains to meet user needs. No one single collection can carry out this task alone, and therefore, it is important that output and strategy are coordinated to ensure culture collections deliver the basic resources and services microbiological innovation requires. This chapter describes the types of collection and how they can implement quality management systems and operate to deliver their basic functions. The links to information sources given not only provide support for the practitioners within collections but also provide guidance to users on accessing the huge resource available and how they can help ensure microbiology has the resources and a solid platform for future development.

Journal ArticleDOI
TL;DR: Neither single nor a mix of different Bt proteins were found harmful to honey bee larvae, and the biosafety of Galanthus nivalis agglutinin, a candidate protein for pest control was tested.
Abstract: The honey bee is a key non-target arthropod in environmental risk assessments of genetically modified crops. We analyzed for the first time combined effects of three Bt proteins conferring insect resistances, and a CP4-protein conferring an herbicide resistance as simultaneously expressed in one GM maize. Furthermore, the biosafety of Galanthus nivalis agglutinin (GNA lectin), a candidate protein for pest control was tested. Under worst-case exposure scenario, by using controlled in vitro larvae rearing, the combination of Bt proteins showed no adverse effects on bee larvae. In contrast, the GNA lectin was toxic at a 144 h LD50 of 16.3 μg/larva. The prepupal weight was found to differ between the larvae collection days and between the colonies used for the experiment, explaining up to five times more data variance than the protein treatments (N = 709 prepupae). In conclusion, neither single nor a mix of different Bt proteins were found harmful to honey bee larvae.

Journal ArticleDOI
TL;DR: A symbiotic bacterium, strain IMI 397775(T), was isolated from the insect-pathogenic nematode Steinernema australe and was shown to belong to the genus Xenorhabdus, in agreement with the genus of its nematodes host.
Abstract: A symbiotic bacterium, strain IMI 397775T, was isolated from the insect-pathogenic nematode Steinernema australe. On the basis of 16S rRNA gene sequence similarity, this bacterial isolate was shown to belong to the genus Xenorhabdus , in agreement with the genus of its nematode host. The accurate phylogenetic position of this new isolate was defined using a multigene approach and showed that isolate IMI 397775T shares a common ancestor with Xenorhabdus doucetiae FRM16T and Xenorhabdus romanii PR06-AT, the symbiotic bacteria associated with Steinernema diaprepesi and Steinernema puertoricense, respectively. The nucleotide identity (less than 97 %) between isolate IMI 397775T, X. doucetiae FRM16T and X. romanii PR06-AT calculated for the concatenated sequences of five gene fragments encompassing 4275 nt, several phenotypic traits and the difference between the upper temperatures that limit growth of these three bacteria allowed genetic and phenotypic differentiation of isolate IMI 397775T from the two closely related species. Strain IMI 397775T therefore represents a novel species, for which the name Xenorhabdus magdalenensis sp. nov. is proposed, with the type strain IMI 397775T ( = DSM 24915T).

Journal ArticleDOI
TL;DR: The findings suggest that mass rearing of biological control agents may strongly impact genetic diversity and life‐history traits in the Asian harlequin ladybird Harmonia axyridis.
Abstract: After being used as a biocontrol agent against aphids for decades without harmful consequences, the Asian harlequin ladybird Harmonia axyridis has suddenly become an invasive pest on a worldwide scale. We investigate the impact of captive breeding on several traits of this ladybird such as genetic diversity, fecundity, survival and pathogen resistance. We conducted an experiment in the laboratory to compare the fecundity and the susceptibility to the entomopathogenic fungus Beauveria bassiana of wild and biocontrol adults of H. axyridis. We compiled these new findings with already published data. Altogether, our findings suggest that mass rearing of biological control agents may strongly impact genetic diversity and life-history traits. We discuss how such changes may subsequently affect the fitness of biological control strains in natural environments.

Journal ArticleDOI
TL;DR: A finer molecular characterisation and phylogenetic relatedness of the 16SrII phytoplasma strain by sequence analyses of the16S rRNA and ribosomal protein genes rpl22-rps3 indicated that it was most closely related to the 16srII-E subgroup.
Abstract: A 2-year study of host association, molecular characterisation and vector transmission of a phytoplasma related to the 16SrII group in a vineyard of south-eastern Serbia was conducted. Grapevine, eight common weeds and 31 Auchenorrhyncha species were collected and analysed for phytoplasma presence. PCR-RFLP analyses of the 16S rRNA gene identified the presence of a new strain of phytoplasma related to the 16SrII group in P. hieracioides with symptoms of stunting or bushy stunting. Grapevine samples, all without symptoms, were negative for phytoplasma presence. Plants of Erigeron annuus, Cynodon dactylon, Daucus carota and P. hieracioides, either exhibiting symptoms of yellowing or without symptoms, were positive for the presence of stolbur phytoplasma. Among the tested cicada species, seven were infected with phytoplasmas from the aster yellows group, two with stolbur phytoplasma, two with 16SrII phytoplasma, and one with the 16SrV-C phytoplasma subgroup. The phytoplasma strain of the 16SrII group was recorded in approximately 50 % of the collected leafhopper species Neoaliturus fenestratus and in a few specimens of the planthopper Dictyophara europaea. The vector status of N. fenestratus was tested using the second generation of the planthopper in two separate transmission trials with P. hieracioides and periwinkle seedlings. In both tests, the leafhopper successfully transmitted 16SrII phytoplasma to exposed plants, proving its role as a natural vector of this phytoplasma in Europe. A finer molecular characterisation and phylogenetic relatedness of the 16SrII phytoplasma strain by sequence analyses of the 16S rRNA and ribosomal protein genes rpl22-rps3 indicated that it was most closely related to the 16SrII-E subgroup.

Journal ArticleDOI
TL;DR: It is found that the genetic structure of invasive populations does not necessarily offer information on its chemical diversity and vice versa, demonstrating that biological control research to consider factors potentially interfering with the success of biocontrol agents prior to release is necessary.

Journal ArticleDOI
TL;DR: Lenient early season grazing increased total invertebrate abundance by 71% after 4 years, the most responsive groups being Araneae, Auchenorrhyncha, Collembola and Heteroptera; and early cessation of grazing led to increased cover of Holcus lanatus and Agrostis spp.

Journal ArticleDOI
TL;DR: The higher parasitism rates observed in the Balkans and the scarcity of the Balkan–Cameraria haplotypes out of the Balkans open the possibility of using these Balkan haplotypes as biological control agents of C. ohridella elsewhere in Europe.
Abstract: Classical biological control is often advocated as a tool for managing invasive species. However, accurate evaluations of parasitoid species complexes and assessment of host specificity are impeded by the lack of morphological variation. Here, we study the possibility of host races/species within the eulophid wasp Pediobius saulius, a pupal generalist parasitoid that parasitize the highly invasive horse-chestnut leaf-mining moth Cameraria ohridella. We analysed the population genetic structure, host associations and phylogeographic patterns of P. saulius in Europe using the COI mitochondrial gene. This marker strongly supports a division into at least five highly differentiated parasitoid complexes, within two of which clades with differing degrees of host specialization were found: a Balkan clade that mainly (but not only) attacks C. ohridella and a more generalist European group that attacks many hosts, including C. ohridella. The divergence in COI (up to 7.6%) suggests the existence of cryptic species, although this is neither confirmed by nuclear divergence nor morphology. We do not find evidence of host tracking. The higher parasitism rates observed in the Balkans and the scarcity of the Balkan–Cameraria haplotypes out of the Balkans open the possibility of using these Balkan haplotypes as biological control agents of C. ohridella elsewhere in Europe.