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Carlos Bustamante

Researcher at Stanford University

Publications -  799
Citations -  122303

Carlos Bustamante is an academic researcher from Stanford University. The author has contributed to research in topics: Population & DNA. The author has an hindex of 161, co-authored 770 publications receiving 106053 citations. Previous affiliations of Carlos Bustamante include Lawrence Berkeley National Laboratory & University of California.

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XGMix: Local-Ancestry Inference With Stacked XGBoost

TL;DR: This work presents a method (XGMix) based on gradient boosted trees, which, while being accurate, is also simple to use, and fast to train, taking minutes on consumer-level laptops.
Journal ArticleDOI

Dynamic RNA Regulation in the Brain Underlies Physiological Plasticity in a Hibernating Mammal.

TL;DR: In this paper, the 13-lined ground squirrel genome assembly was used to identify 6,505 hibernation-related, differentially-expressed and processed transcripts using RNA-seq data from three brain regions in animals whose physiological status was precisely defined using body temperature telemetry.
Posted ContentDOI

Genomic insights into the domestication of the chocolate tree, Theobroma cacao L

TL;DR: It is shown for the first time that a single population underwent strong domestication approximately 3,600 years ago, the Criollo population, and that during the process of domestication, there was strong selection for genes involved in the metabolism of the colored protectants anthocyanins and the stimulant theobromine, as well as disease resistance genes.