Y
Yongyong Shi
Researcher at Shanghai Jiao Tong University
Publications - 285
Citations - 15752
Yongyong Shi is an academic researcher from Shanghai Jiao Tong University. The author has contributed to research in topics: Genome-wide association study & Single-nucleotide polymorphism. The author has an hindex of 50, co-authored 269 publications receiving 12596 citations. Previous affiliations of Yongyong Shi include Anhui Medical University & Qingdao University.
Papers
More filters
Journal ArticleDOI
SHEsis, a powerful software platform for analyses of linkage disequilibrium, haplotype construction, and genetic association at polymorphism loci.
Yongyong Shi,Lin He +1 more
TL;DR: A robust and user-friendly software platform with a series of tools for analysis in association study with high efficiency for analyses of linkage disequilibrium between markers, haplotype distributions and many chi-square/p values is developed.
Journal ArticleDOI
The sequence and de novo assembly of the giant panda genome
Ruiqiang Li,Wei Fan,Geng Tian,Hongmei Zhu,Lin He,Lin He,Jing Cai,Jing Cai,Quanfei Huang,Qingle Cai,Bo Li,Yinqi Bai,Zhihe Zhang,Ya-Ping Zhang,Wen Wang,Jun Li,Fuwen Wei,Heng Li,Min Jian,Jianwen Li,Zhaolei Zhang,Rasmus Nielsen,Dawei Li,Wanjun Gu,Zhentao Yang,Zhaoling Xuan,Oliver A. Ryder,Frederick C. Leung,Yan Zhou,Jianjun Cao,Xiao Sun,Yonggui Fu,Xiaodong Fang,Xiaosen Guo,Bo Wang,Rong Hou,Fujun Shen,Bo Mu,Peixiang Ni,Runmao Lin,Wubin Qian,Guo-Dong Wang,Guo-Dong Wang,Chang Yu,Wenhui Nie,Jinhuan Wang,Zhigang Wu,Huiqing Liang,Jiumeng Min,Qi Wu,Shifeng Cheng,Jue Ruan,Mingwei Wang,Zhongbin Shi,Ming Wen,Binghang Liu,Xiaoli Ren,Huisong Zheng,Dong Dong,Kathleen Cook,Gao Shan,Hao Zhang,Carolin Kosiol,Xueying Xie,Zuhong Lu,Hancheng Zheng,Yingrui Li,Cynthia C. Steiner,Tommy Tsan-Yuk Lam,Siyuan Lin,Qinghui Zhang,Guoqing Li,Jing Tian,Timing Gong,Hongde Liu,Dejin Zhang,Lin Fang,Chen Ye,Juanbin Zhang,Wenbo Hu,Anlong Xu,Yuanyuan Ren,Guojie Zhang,Guojie Zhang,Michael William Bruford,Qibin Li,Lijia Ma,Yiran Guo,Na An,Yujie Hu,Yang Zheng,Yongyong Shi,Zhiqiang Li,Qing Liu,Yanling Chen,Jing Zhao,Ning Qu,Shancen Zhao,Feng Tian,Xiaoling Wang,Haiyin Wang,Lizhi Xu,Xiao Liu,Tomas Vinar,Yajun Wang,Tak-Wah Lam,Siu-Ming Yiu,Shiping Liu,Hemin Zhang,Desheng Li,Yan Huang,Xia Wang,Guohua Yang,Zhi Jiang,Junyi Wang,Nan Qin,Li Li,Jingxiang Li,Lars Bolund,Karsten Kristiansen,Gane Ka-Shu Wong,Maynard V. Olson,Xiuqing Zhang,Songgang Li,Huanming Yang,Jing Wang,Jun Wang +126 more
TL;DR: Using next-generation sequencing technology alone, a draft sequence of the giant panda genome is generated and assembled, indicating that its bamboo diet might be more dependent on its gut microbiome than its own genetic composition.
Journal ArticleDOI
Identification of loci associated with schizophrenia by genome-wide association and follow-up
Michael Conlon O'Donovan,Nicholas John Craddock,Nadine Norton,Hywel Williams,T. Peirce,Valentina Moskvina,Ivan Nikolov,Marian L. Hamshere,Liam S. Carroll,Lyudmila Georgieva,Sarah Dwyer,Peter Holmans,Jonathan Marchini,Chris C. A. Spencer,Bryan Howie,H. T. Leung,Annette M. Hartmann,Hans-Jürgen Möller,Derek W. Morris,Yongyong Shi,Guo Yin Feng,Per Hoffmann,Peter Propping,Catalina Vasilescu,Wolfgang Maier,Marcella Rietschel,Stanley Zammit,Johannes Schumacher,Emma M. Quinn,Thomas G. Schulze,Nigel Williams,Ina Giegling,Nakao Iwata,Masashi Ikeda,Ariel Darvasi,Sagiv Shifman,Lin He,Jubao Duan,Alan R. Sanders,Douglas F. Levinson,Pablo V. Gejman,Nancy G. Buccola,Bryan J. Mowry,Robert Freedman,Farooq Amin,Donald W. Black,Jeremy M. Silverman,William Byerley,C. Robert Cloninger,Sven Cichon,Markus M. Nöthen,Michael Gill,Aiden Corvin,Dan Rujescu,George Kirov,Michael John Owen +55 more
TL;DR: Meta-analysis provided strongest evidence for association around ZNF804A and this strengthened when the affected phenotype including bipolar disorder included bipolar disorder and the overall pattern of replication was unlikely to occur by chance.
Journal ArticleDOI
Mapping genomic loci implicates genes and synaptic biology in schizophrenia
Vassily Trubetskoy,Antonio F. Pardiñas,Ting Qi,Georgia Panagiotaropoulou,Swapnil Awasthi,Tim B. Bigdeli,Julien Bryois,Chia-Yen Chen,Charlotte Dennison,Lynsey S. Hall,Max Lam,Kyoko Watanabe,Oleksandr Frei,Tian Ge,Janet C Harwood,Frank Koopmans,Sigurdur Magnusson,Alexander Richards,Julia Sidorenko,Yang Wu,Jian Zeng,Jakob Grove,Minsoo Kim,Zhiqiang Li,Georgios Voloudakis,Wen Jie Zhang,Mark Adams,Ingrid Agartz,Elizabeth G. Atkinson,Esben Agerbo,Mariam M. Al Eissa,Margot Albus,Madeline Alexander,Behrooz Z. Alizadeh,Köksal Alptekin,Thomas Damm Als,Farooq Amin,Volker Arolt,Manuel Arrojo,Lavinia Athanasiu,M. Helena Azevedo,Silviu Alin Bacanu,Nicholas Bass,Martin Begemann,Richard A. Belliveau,Judit Bene,Beben Benyamin,Sarah E. Bergen,Giuseppe Blasi,Julio Bobes,Stefano Bonassi,Alice Braun,Rodrigo A. Bressan,Evelyn J. Bromet,Richard Bruggeman,Peter J. Buckley,Randy L. Buckner,Jonas Bybjerg-Grauholm,Wiepke Cahn,Murray J. Cairns,Monica E. Calkins,Vaughan J. Carr,David J. Castle,Stanley V. Catts,Kimberly Chambert,Raymond C.K. Chan,Boris Chaumette,Wei Cheng,Eric F.C. Cheung,Siow Ann Chong,David Cohen,Angèle Consoli,Quirino Cordeiro,Javier Costas,Charles Curtis,Michael H. Davidson,Kenneth L. Davis,Lieuwe de Haan,Franziska Degenhardt,Lynn E. DeLisi,Ditte Demontis,Faith Dickerson,Dimitris Dikeos,Timothy G. Dinan,Srdjan Djurovic,Jubao Duan,Giuseppe Ducci,Frank Dudbridge,Johan G. Eriksson,Lourdes Fañanás,Stephen V. Faraone,Alessia Fiorentino,Andreas J. Forstner,Josef Frank,Nelson B. Freimer,Menachem Fromer,Alessandra Frustaci,Ary Gadelha,Giulio Genovese,Elliot S. Gershon,Marianna Giannitelli,Ina Giegling,Paola Giusti-Rodríguez,Stephanie Godard,Jackie Goldstein,Javier González Peñas,Ana González-Pinto,Srihari Gopal,Jacob Gratten,Michael F. Green,Tiffany A. Greenwood,Olivier Guillin,Sinan Gülöksüz,Raquel E. Gur,Ruben C. Gur,Blanca Gutiérrez,Eric Hahn,Hakon Hakonarson,Vahram Haroutunian,T. Hartmann,Carol Harvey,Caroline Hayward,Frans Henskens,Stefan Herms,Per Hoffmann,Daniel P. Howrigan,Masashi Ikeda,Conrad Iyegbe,Inge Joa,Antonio Julià,Anna K. Kähler,Tony Kam-Thong,Yoichiro Kamatani,Sena Karachanak-Yankova,Oussama Kebir,Matthew C. Keller,Brian Kelly,Andrey Khrunin,Sung-Wan Kim,Janis Klovins,N. V. Kondratiev,Bettina Konte,Julia Kraft,Michiaki Kubo,Vaidutis Kučinskas,Zita Ausrele Kucinskiene,Agung A.A.A Kusumawardhani,Hana Kuzelova-Ptackova,Stefano Landi,Laura C. Lazzeroni,Phil Lee,Sophie E. Legge,Douglas S. Lehrer,Rebekka Lencer,Bernard Lerer,Miaoxin Li,Jeffrey A. Lieberman,Gregory A. Light,Svetlana A. Limborska,Chih-Min Liu,Jouko Lönnqvist,Carmel M. Loughland,Jan Lubinski,Jurjen J. Luykx,Amy Lynham,Milan Macek,Andrew Mackinnon,Patrik K. E. Magnusson,Brion S. Maher,Wolfgang Mader,Dolores Malaspina,Jacques Mallet,Stephen R. Marder,Sara Marsal,Alicia R. Martin,Lourdes Martorell,Manuel Mattheisen,Robert W. McCarley,Colm McDonald,John J. McGrath,Helena Medeiros,Sandra Meier,Béla Melegh,Ingrid Melle,Raquelle I. Mesholam-Gately,Andres Metspalu,Patricia T. Michie,Lili Milani,Vihra Milanova,Marina Mitjans,Espen Molden,Esther Molina,María Dolores Moltó,Valeria Mondelli,Carmen Moreno,Christopher P. Morley,Gerard Muntané,Kieran C. Murphy,Inez Myin-Germeys,Igor Nenadic,Gerald Nestadt,Liene Nikitina-Zake,Cristiano Noto,Keith H. Nuechterlein,Niamh L. O'Brien,F. Anthony O'Neill,Sang Oh,Ann Olincy,Vanessa Kiyomi Ota,Christos Pantelis,George N. Papadimitriou,Mara Parellada,Tiina Paunio,Renata Pellegrino,Sathish Periyasamy,Diana O. Perkins,Bruno Pfuhlmann,Olli Pietiläinen,Jonathan Pimm,David J. Porteous,John Powell,Diego Quattrone,Digby Quested,Allen D. Radant,Antonio Rampino,Mark Hyman Rapaport,Anna Rautanen,Abraham Reichenberg,Cheryl A. Roe,Joshua L. Roffman,Julian Roth,Matthias Rothmund,Bart P. F. Rutten,Safaa Saker-Delye,Veikko Salomaa,Julio Sanjuán,Marcos L. Santoro,Adam Savitz,Ulrich Schall,Rodney J. Scott,Larry J. Seidman,Sally I. Sharp,Jianxin Shi,Larry J. Siever,Engilbert Sigurdsson,Kang Sim,Nora Skarabis,Petr Slominsky,Hon-Cheong So,Janet L. Sobell,Erik Söderman,Helen J. Stain,Nils Eiel Steen,Agnes A. Steixner-Kumar,Elisabeth Stögmann,William S. Stone,Richard E. Straub,Fabian Streit,Eric Strengman,T. Scott Stroup,Mythily Subramaniam,Catherine A. Sugar,Jaana Suvisaari,Dragan M. Svrakic,Neal R. Swerdlow,Jin P. Szatkiewicz,Thi Minh Tam Ta,Atsushi Takahashi,Chikashi Terao,Florence Thibaut,Draga Toncheva,Paul A. Tooney,Silvia Torretta,Sarah Tosato,G.B. Tura,Bruce I. Turetsky,Alp Üçok,Arne E. Vaaler,Therese van Amelsvoort,Ruud van Winkel,Juha Veijola,John L. Waddington,Henrik Walter,Anna Waterreus,Bradley T. Webb,Mark Weiser,Nigel Williams,Stephanie H. Witt,Brandon Wormley,Jing Qin Wu,Zhida Xu,R.T Yolken,Clement C. Zai,Wei Zhou,Feng Zhu,Fritz Zimprich,E. Cem Atbasoglu,Muhammad Ayub,Christian Benner,Alessandro Bertolini,Donald W. Black,Nicholas John Bray,Gerome Breen,Nancy G. Buccola,William Byerley,Wei J. Chen,C. Robert Cloninger,Benedicto Crespo-Facorro,Gary Donohoe,Robert Freedman,Cherrie Galletly,Michael J. Gandal,Massimo Gennarelli,David M. Hougaard,Hai-Gwo Hwu,Assen Jablensky,Steven A. McCarroll,Jennifer L. Moran,Ole Mors,Preben Bo Mortensen,Bertram Müller-Myhsok,Amanda L. Neil,Merete Nordentoft,Michele T. Pato,Tracey L. Petryshen,Matti Pirinen,Ann E. Pulver,Thomas G. Schulze,Jeremy M. Silverman,Jordan W. Smoller,Eli A. Stahl,Debby W. Tsuang,Elisabet Vilella,Shi‐Heng Wang,Shuhua Xu,Rolf Adolfsson,Celso Arango,Bernhard T. Baune,Sintia Iole Belangero,Anders D. Børglum,David L. Braff,Elvira Bramon,Joseph D. Buxbaum,Dominique Campion,Jorge A. Cervilla,Sven Cichon,David A. Collier,Aiden Corvin,David Curtis,Marta Di Forti,Enrico Domenici,Hannelore Ehrenreich,Valentina Escott-Price,Tõnu Esko,Ayman H. Fanous,A. E. Gareeva,Micha Gawlik,Pablo V. Gejman,Michael Gill,Stephen J. Glatt,Vera Golimbet,Kyung Sue Hong,Christina M. Hultman,Steven E. Hyman,Nakao Iwata,Erik G. Jönsson,René S. Kahn,James L. Kennedy,Elza Khusnutdinova,George Kirov,James A. Knowles,Marie-Odile Krebs,Claudine Laurent-Levinson,Jimmy Lee,Todd Lencz,Douglas F. Levinson,Qingqin S. Li,Jianjun Liu,Anil K. Malhotra,Dheeraj Malhotra,Andrew M. McIntosh,Andrew McQuillin,Paulo Rossi Menezes,Vera A. Morgan,Derek W. Morris,Bryan J. Mowry,Robin M. Murray,Vishwajit L. Nimgaonkar,Markus M. Nöthen,Roel A. Ophoff,Sara A. Paciga,Aarno Palotie,Carlos N. Pato,Shengying Qin,Marcella Rietschel,Brien P. Riley,Margarita Rivera,Dan Rujescu,Meram Can Saka,Alan R. Sanders,Sibylle G. Schwab,Alessandro Serretti,Pak C. Sham,Yongyong Shi,David St Clair,Hreinn Stefansson,Kari Stefansson,Ming T. Tsuang,Jim van Os,Marquis P. Vawter,Daniel R. Weinberger,Thomas Werge,Dieter B. Wildenauer,Xin-ming Yu,Weihua Yue,Peter Holmans,Andrew Pocklington,Panos Roussos,Evangelos Vassos,Matthijs Verhage,Peter M. Visscher,Danielle Posthuma,Ole A. Andreassen,Kenneth S. Kendler,Michael John Owen,Naomi R. Wray,Mark J. Daly,Hailiang Huang,Benjamin M. Neale,Patrick F. Sullivan,Stephan Ripke,James T.R. Walters,Michael Conlon O'Donovan +432 more
TL;DR: In this article , a two-stage genome-wide association study of up to 76,755 individuals with schizophrenia and 243,649 control individuals was conducted, and the authors reported common variant associations at 287 distinct genomic loci.
Journal ArticleDOI
Genome-wide association study identifies susceptibility loci for polycystic ovary syndrome on chromosome 2p16.3, 2p21 and 9q33.3
Zi-Jiang Chen,Han Zhao,Lin He,Lin He,Lin He,Yuhua Shi,Yingying Qin,Yongyong Shi,Zhiqiang Li,Li You,Junli Zhao,Jiayin Liu,Xiaoyan Liang,Xiaoming Zhao,Junzhao Zhao,Yingpu Sun,Bo Zhang,Hong Jiang,Dongni Zhao,Yuehong Bian,Xuan Gao,Ling Geng,Yiran Li,Dongyi Zhu,Xiuqin Sun,Jin-e Xu,Cuifang Hao,Chun-e Ren,Yajie Zhang,Shi-Ling Chen,Wei Zhang,Aijun Yang,Junhao Yan,Yuan Li,Jinlong Ma,Yueran Zhao +35 more
TL;DR: Strong evidence of associations between PCOS and three loci is identified and follow-up studies of the candidate genes in these regions are recommended, providing new insight into the pathogenesis of PCOS.