Utsunomiya University

About: Utsunomiya University is a education organization based out in Utsunomiya, Japan. It is known for research contribution in the topics: Laser & Holography. The organization has 4139 authors who have published 6812 publications receiving 91975 citations. The organization is also known as: Utsunomiya daigaku.

A transcriptome for the study of early processes of retinal regeneration in the adult newt, Cynops pyrrhogaster.

Abstract: Retinal regeneration in the adult newt is a useful system to uncover essential mechanisms underlying the regeneration of body parts of this animal as well as to find clues to treat retinal disorders such as proliferative vitreoretinopathy. Here, to facilitate the study of early processes of retinal regeneration, we provide a de novo assembly transcriptome and inferred proteome of the Japanese fire bellied newt (Cynops pyrrhogaster), which was obtained from eyeball samples of day 0–14 after surgical removal of the lens and neural retina. This transcriptome (237,120 in silico transcripts) contains most information of cDNAs/ESTs which has been reported in newts (C. pyrrhogaster, Pleurodeles waltl and Notophthalmus viridescence) thus far. On the other hand, de novo assembly transcriptomes reported lately for N. viridescence only covered 16–31% of this transcriptome, suggesting that most constituents of this transcriptome are specific to the regenerating eye tissues of C. pyrrhogaster. A total of 87,102 in silico transcripts of this transcriptome were functionally annotated. Coding sequence prediction in combination with functional annotation revealed that 76,968 in silico transcripts encode protein/peptides recorded in public databases so far, whereas 17,316 might be unique. qPCR and Sanger sequencing demonstrated that this transcriptome contains much information pertaining to genes that are regulated in association with cell reprogramming, cell-cycle re-entry/proliferation, and tissue patterning in an early phase of retinal regeneration. This data also provides important insight for further investigations addressing cellular mechanisms and molecular networks underlying retinal regeneration as well as differences between retinal regeneration and disorders. This transcriptome can be applied to ensuing comprehensive gene screening steps, providing candidate genes, regardless of whether annotated or unique, to uncover essential mechanisms underlying early processes of retinal regeneration.

Examination of within-tree variations and the heights representing whole-tree values of derived wood properties for quasi-non-destructive breeding of Eucalyptus camaldulensis and Eucalyptus globulus as quality pulpwood

Abstract: Within-tree variations of derived wood properties of Runkel ratio, Luce’s shape factor, slenderness ratio, and solids factor were examined for Eucalyptus camaldulensis and Eucalyptus globulus trees and the tendency difference in the within-tree variations between individuals and between species, in both radial and axial directions by statistical data analysis. These properties are important for quality breeding of pulpwood. In both species, within-tree variations were generally observed as higher values in the upper and outer parts compared with other parts of the trunk for Runkel ratio and Luce’s shape factor. In E. camaldulensis, within-tree variations were observed as higher values in the upper and outer parts compared with other parts of the trunk for slenderness ratio and solids factor. In E. globulus, within-tree variations were observed as higher values in the outer parts compared with other parts for slenderness ratio and solids factor. However, significant difference of tendency was observed in radial variation between individuals of E. globulus for Runkel ratio and in both radial and axial variations between species for solids factor. Furthermore, within-tree variations of derived wood properties were analyzed to determine a sampling height in the trunk which can be used to represent whole-tree values. Representative heights of derived wood properties from two trees were found to be 2.8 m in E. camaldulensis (except for Runkel ratio and Luce’s shape factor) and 1.8 m in E. globules (except for Runkel ratio), regardless of differences in tree height (growth rate) and in tendency of within-tree variation of derived wood properties.

A newly isolatedBacillus stearotheromophilus K1041 and its transformation by electroporation

Abstract: Optimal conditions for the plasmid transformation of a newly isolatedBacillusstearothermophilus K1041 by electroporation were investigated. The optimal conditions allowed a transformation efficiency of 5.8×105 transformants per μg plasmid pUB110.