Initial sequencing and analysis of the human genome.
Eric S. Lander,Lauren Linton,Bruce W. Birren,Chad Nusbaum,Michael C. Zody,Jennifer Baldwin,Keri Devon,Ken Dewar,Michael Doyle,William Fitzhugh,Roel Funke,Diane Gage,Katrina Harris,Andrew Heaford,John Howland,Lisa Kann,Jessica A. Lehoczky,Rosie Levine,Paul A. McEwan,Kevin McKernan,James Meldrim,Jill P. Mesirov,Cher Miranda,William Morris,Jerome Naylor,Christina Raymond,Mark Rosetti,Ralph Santos,Andrew Sheridan,Carrie Sougnez,Nicole Stange-Thomann,Nikola Stojanovic,Aravind Subramanian,Dudley Wyman,Jane Rogers,John Sulston,R Ainscough,Stephan Beck,David Bentley,John Burton,C M Clee,Nigel P. Carter,Alan Coulson,Rebecca Deadman,Panos Deloukas,Andrew Dunham,Ian Dunham,Richard Durbin,Lisa French,Darren Grafham,Simon G. Gregory,Tim Hubbard,Sean Humphray,Adrienne Hunt,Matthew Jones,Christine Lloyd,Amanda McMurray,Lucy Matthews,Simon Mercer,Sarah Milne,James C. Mullikin,Andrew J. Mungall,Robert W. Plumb,Mark T. Ross,Ratna Shownkeen,Sarah Sims,Robert H. Waterston,Richard K. Wilson,LaDeana W. Hillier,John Douglas Mcpherson,Marco A. Marra,Elaine R. Mardis,Lucinda Fulton,Asif T. Chinwalla,Kymberlie H. Pepin,Warren Gish,Stephanie L. Chissoe,Michael C. Wendl,Kim D. Delehaunty,Tracie L. Miner,Andrew Delehaunty,Jason B. Kramer,Lisa Cook,Robert S. Fulton,Douglas L. Johnson,Patrick Minx,Sandra W. Clifton,Trevor Hawkins,Elbert Branscomb,Paul Predki,Paul G. Richardson,Sarah Wenning,Tom Slezak,Norman A. Doggett,Jan Fang Cheng,Anne S. Olsen,Susan Lucas,Christopher J. Elkin,Edward Uberbacher,Marvin Frazier,Richard A. Gibbs,Donna M. Muzny,Steven E. Scherer,John Bouck,Erica Sodergren,Kim C. Worley,Catherine M. Rives,James H. Gorrell,Michael L. Metzker,Susan L. Naylor,Raju Kucherlapati,David L. Nelson,George M. Weinstock,Yoshiyuki Sakaki,Asao Fujiyama,Masahira Hattori,Tetsushi Yada,Atsushi Toyoda,Takehiko Itoh,Chiharu Kawagoe,Hidemi Watanabe,Yasushi Totoki,Todd D. Taylor,Jean Weissenbach,Roland Heilig,William Saurin,François Artiguenave,Philippe Brottier,Thomas Brüls,Eric Pelletier,Catherine Robert,Patrick Wincker,André Rosenthal,Matthias Platzer,Gerald Nyakatura,Stefan Taudien,Andreas Rump,Douglas R. Smith,Lynn Doucette-Stamm,Marc Rubenfield,Keith Weinstock,Mei Lee Hong,Joann Dubois,Huanming Yang,Jun Yu,Jian Wang,Guyang Huang,Jun Gu,Leroy Hood,Lee Rowen,Anup Madan,Shizen Qin,Ronald W. Davis,Nancy A. Federspiel,A. Pia Abola,Michael Proctor,Bruce A. Roe,Feng Chen,Huaqin Pan,Juliane Ramser,Hans Lehrach,Richard Reinhardt,W. Richard McCombie,Melissa De La Bastide,Neilay Dedhia,H. Blöcker,K. Hornischer,Gabriele Nordsiek,Richa Agarwala,L. Aravind,Jeffrey A. Bailey,Alex Bateman,Serafim Batzoglou,Ewan Birney,Peer Bork,Daniel G. Brown,Christopher B. Burge,Lorenzo Cerutti,Hsiu Chuan Chen,Deanna M. Church,Michele Clamp,Richard R. Copley,Tobias Doerks,Sean R. Eddy,Evan E. Eichler,Terrence S. Furey,James E. Galagan,James G. R. Gilbert,Cyrus L. Harmon,Yoshihide Hayashizaki,David Haussler,Henning Hermjakob,Karsten Hokamp,Wonhee Jang,L. Steven Johnson,Thomas A. Jones,Simon Kasif,Arek Kaspryzk,Scot Kennedy,W. James Kent,Paul Kitts,Eugene V. Koonin,Ian F Korf,David Kulp,Doron Lancet,Todd M. Lowe,Aoife McLysaght,Tarjei S. Mikkelsen,John V. Moran,Nicola Mulder,Victor J. Pollara,Chris P. Ponting,Greg Schuler,Jörg Schultz,Guy Slater,Arian F.A. Smit,Elia Stupka,Joseph Szustakowki,Danielle Thierry-Mieg,Jean Thierry-Mieg,Lukas Wagner,John W. Wallis,Raymond Wheeler,Alan Williams,Yuri I. Wolf,Kenneth H. Wolfe,Shiaw Pyng Yang,Ru Fang Yeh,Francis S. Collins,Mark S. Guyer,Jane Peterson,Adam Felsenfeld,Kris A. Wetterstrand,Richard M. Myers,Jeremy Schmutz,Mark Dickson,Jane Grimwood,David R. Cox,Maynard V. Olson,Rajinder Kaul,Christopher K. Raymond,Nobuyoshi Shimizu,Kazuhiko Kawasaki,Shinsei Minoshima,Glen A. Evans,Maria Athanasiou,Roger A. Schultz,Aristides Patrinos,Michael J. Morgan +248 more
TLDR
The results of an international collaboration to produce and make freely available a draft sequence of the human genome are reported and an initial analysis is presented, describing some of the insights that can be gleaned from the sequence.Abstract:
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.read more
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Gene expression profiles of transcription factors and signaling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks
TL;DR: The genomewide approach to networks of developmental genes in Ciona embryos is discussed and transcription factor genes and signal transduction genes involved in each of the downstream processes can be deduced comprehensively using the present approach.
Journal ArticleDOI
Non-random radial higher-order chromatin arrangements in nuclei of diploid human cells.
Marion Cremer,Johann von Hase,Tanja Volm,Alessandro Brero,Gregor Kreth,Joachim Walter,Christine Fischer,Irina Solovei,Christoph Cremer,Thomas Cremer +9 more
TL;DR: It is concluded that nuclear functions in the studied cell types may not require reproducible side-by-side arrangements of specific homologous or non-homologous CTs, and that presently unknown factors may play a decisive role to enforce the different radial arrangements of large and small CTs observed in ellipsoid and spherical human cell nuclei.
Journal ArticleDOI
Long noncoding RNA HOTTIP/HOXA13 expression is associated with disease progression and predicts outcome in hepatocellular carcinoma patients
Luca Quagliata,Matthias S. Matter,Salvatore Piscuoglio,Salvatore Piscuoglio,Leila Arabi,Christian Ruiz,Alfredo Procino,Michal Kovac,Francesca Moretti,Zuzanna Makowska,Tujana Boldanova,Jesper B. Andersen,Monika Hämmerle,Luigi Tornillo,Markus H. Heim,Sven Diederichs,Clemente Cillo,Luigi Terracciano +17 more
TL;DR: It is demonstrated that the levels of HOTTIP and HOXA13 are associated with HCC patients' clinical progression and predict disease outcome, and novel insights on the function of lncRNA‐driven hepatocarcinogenesis are provided.
Journal ArticleDOI
A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome
Richard J. Mural,Mark Raymond Adams,Eugene W. Myers,Hamilton O. Smith,George L. Gabor Miklos,Ron Wides,Aaron L. Halpern,Peter W. Li,Granger G. Sutton,J. H. Nadeau,Steven L. Salzberg,Robert A. Holt,Chinnappa D. Kodira,Fu Lu,Lin Chen,Zuoming Deng,Carlos Evangelista,Weiniu Gan,Thomas J. Heiman,Jiayin Li,Zhenya Li,Gennady V. Merkulov,Natalia Milshina,Ashwinikumar K Naik,Rong Qi,Bixiong Chris Shue,Aihui Wang,Jian Wang,Xin Wang,Xianghe Yan,Jane Ye,Shibu Yooseph,Qi Zhao,Liansheng Zheng,Shiaoping C. Zhu,Kendra Biddick,Randall Bolanos,Arthur L. Delcher,Ian M. Dew,Daniel Fasulo,Michael Flanigan,Daniel H. Huson,Saul A. Kravitz,Jason R. Miller,Clark M. Mobarry,Knut Reinert,Karin A. Remington,Qing Zhang,Xiangqun H. Zheng,Deborah R. Nusskern,Zhongwu Lai,Yiding Lei,Wenyan Zhong,Alison Yao,Ping Guan,Rui-Ru Ji,Zhiping Gu,Zhen-Yuan Wang,Fei Zhong,Chunlin Xiao,Chia-Chien Chiang,Mark Yandell,Jennifer R. Wortman,Peter Amanatides,Suzanne Hladun,Eric Pratts,Jeffery Johnson,Kristina Dodson,Kerry J. Woodford,Cheryl A. Evans,Barry Gropman,Douglas B. Rusch,Eli Venter,Mei Wang,Thomas J. Smith,Jarrett Houck,Donald E. Tompkins,Charles Haynes,Debbie Jacob,Soo H. Chin,David R. Allen,Carl Dahlke,Robert Sanders,Kelvin Li,Xiangjun Liu,Alexander Levitsky,William H. Majoros,Quan Chen,Ashley Xia,John Lopez,Michael Donnelly,Matthew Newman,A. Glodek,Cheryl L. Kraft,Marc Nodell,Feroze Ali,Huijin An,Danita Baldwin-Pitts,Karen Beeson,Shuang Cai,Mark Carnes,Amy Carver,Parris Caulk,Yen-Hui Chen,Ming-Lai Cheng,My Coyne,Michelle Crowder,Steven Danaher,Lionel Davenport,Raymond Desilets,Susanne Dietz,Lisa Doup,Patrick Dullaghan,Steven Ferriera,Carl Fosler,Harold Gire,Andres Gluecksmann,Jeannine D. Gocayne,Jonathan Gray,Brit J. Hart,Jason Haynes,Jeffery Hoover,Tim Howland,Chinyere Ibegwam,Mena Jalali,David Johns,Leslie Kline,Daniel S. Ma,Steven MacCawley,Anand Magoon,Felecia Mann,David May,Tina C. McIntosh,Somil Mehta,Linda Moy,Mee Moy,Brian Murphy,Sean D. Murphy,Keith Nelson,Zubeda Nuri,Kimberly A. Parker,Alexandre C. Prudhomme,Vinita Puri,Hina Qureshi,John C. Raley,Matthew Reardon,Megan A. Regier,Yu-Hui Rogers,Deanna Romblad,Jakob Schutz,Richard Scott,Cynthia Sitter,Michella Smallwood,Arlan Sprague,Erin Stewart,Renee Strong,Ellen Suh,Karena Sylvester,Reginald Thomas,Ni Ni Tint,Christopher Tsonis,Gary Wang,George Wang,Monica Williams,Sherita Williams,Sandra Windsor,Keriellen Wolfe,Mitchell Wu,Jayshree Zaveri,Kabir Chaturvedi,Andrei Gabrielian,Zhaoxi Ke,Jingtao Sun,Gangadharan Subramanian,J. Craig Venter +174 more
TL;DR: Comparison of the structure and protein-coding potential of Mmu 16 with that of the homologous segments of the human genome identifies regions of conserved synteny with human chromosomes (Hsa) 3, 8, 12, 16, 21, and 22.
Journal ArticleDOI
Widespread contribution of transposable elements to the innovation of gene regulatory networks
Vasavi Sundaram,Yong Cheng,Zhihai Ma,Daofeng Li,Xiaoyun Xing,Peter Edge,Michael Snyder,Ting Wang +7 more
TL;DR: Transposable elements have significantly and continuously shaped gene regulatory networks during mammalian evolution, and are an important driving force for regulatory innovation.
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TL;DR: Comparative genomic analysis indicates vertebrate expansions of genes associated with neuronal function, with tissue-specific developmental regulation, and with the hemostasis and immune systems are indicated.
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Identification of common molecular subsequences.
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Journal ArticleDOI
Sequence and organization of the human mitochondrial genome
Stephen Anderson,Alan T. Bankier,Bart Barrell,M.H.L. de Bruijn,Alan Coulson,J. Drouin,J. Drouin,Ian C. Eperon,Donald P. Nierlich,Donald P. Nierlich,Bruce A. Roe,Bruce A. Roe,Frederick Sanger,P. H. Schreier,Andrew J.H. Smith,Rodger Staden,Ian G. Young,Ian G. Young +17 more
TL;DR: The complete sequence of the 16,569-base pair human mitochondrial genome is presented and shows extreme economy in that the genes have none or only a few noncoding bases between them, and in many cases the termination codons are not coded in the DNA but are created post-transcriptionally by polyadenylation of the mRNAs.
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