D
David W. Burt
Researcher at University of Queensland
Publications - 231
Citations - 15226
David W. Burt is an academic researcher from University of Queensland. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 54, co-authored 224 publications receiving 13977 citations. Previous affiliations of David W. Burt include Brigham and Women's Hospital & University of Edinburgh.
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Journal ArticleDOI
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LaDeana W. Hillier,Webb Miller,Ewan Birney,Wesley C. Warren,Ross C. Hardison,Chris P. Ponting,Peer Bork,David W. Burt,Martien A. M. Groenen,Mary E. Delany,Jerry B. Dodgson,Asif T. Chinwalla,Paul F. Cliften,Sandra W. Clifton,Kimberly D. Delehaunty,Catrina Fronick,Robert S. Fulton,Tina Graves,Colin Kremitzki,Dan Layman,Vincent Magrini,John Douglas Mcpherson,Tracie L. Miner,Patrick Minx,William E. Nash,Michael N. Nhan,Joanne O. Nelson,Lachlan G. Oddy,Craig Pohl,Jennifer Randall-Maher,Scott M. Smith,John W. Wallis,Shiaw Pyng Yang,Michael N Romanov,Catherine M. Rondelli,Bob Paton,Jacqueline Smith,David Morrice,Laura M. Daniels,Helen G. Tempest,Lindsay Robertson,Julio S. Masabanda,Darren K. Griffin,Alain Vignal,Valerie Fillon,Lina Jacobbson,Susanne Kerje,Leif Andersson,Richard P. M. A. Crooijmans,Jan Aerts,Jan J. van der Poel,Hans Ellegren,Randolph B. Caldwell,Simon J. Hubbard,Darren Grafham,Andrzej M. Kierzek,Stuart McLaren,Ian M. Overton,Hiroshi Arakawa,Kevin J. Beattie,Yuri Bezzubov,Paul E. Boardman,James K. Bonfield,Michael D. R. Croning,Robert L. Davies,Matthew D. Francis,Sean Humphray,Carol Scott,Ruth Taylor,Cheryll Tickle,William Brown,Jane Rogers,Jean-Marie Buerstedde,Stuart A. Wilson,Lisa Stubbs,Ivan Ovcharenko,Laurie Gordon,Susan Lucas,Marcia M. Miller,Hidetoshi Inoko,Takashi Shiina,James C. Kaufman,Jan Salomonsen,Karsten Skjoedt,Gane Ka-Shu Wong,Jun Wang,Bin Liu,Jian Wang,Jun Yu,Huanming Yang,Mikhail Nefedov,Maxim Koriabine,Pieter J. deJong,Leo Goodstadt,Caleb Webber,Nicholas J. Dickens,Ivica Letunic,Mikita Suyama,David Torrents,Christian von Mering,Evgeny M. Zdobnov,Kateryna D. Makova,Anton Nekrutenko,Laura Elnitski,Pallavi Eswara,David C. King,Shan Yang,Svitlana Tyekucheva,Anusha Radakrishnan,Robert S. Harris,Francesca Chiaromonte,James Taylor,Jianbin He,Monique Rijnkels,Sam Griffiths-Jones,Abel Ureta-Vidal,Michael M. Hoffman,Jessica Severin,Stephen M. J. Searle,Andy Law,David Speed,D. Waddington,Ze Cheng,Eray Tüzün,Evan E. Eichler,Zhirong Bao,Paul Flicek,David Shteynberg,Michael R. Brent,Jacqueline M. Bye,Elizabeth J. Huckle,Sourav Chatterji,Colin N. Dewey,Lior Pachter,Andrei Kouranov,Zissimos Mourelatos,Artemis G. Hatzigeorgiou,Andrew H. Paterson,Robert Ivarie,Mikael Brandström,Erik Axelsson,Niclas Backström,Sofia Berlin,Matthew T. Webster,Olivier Pourquié,Alexandre Reymond,Catherine Ucla,Stylianos E. Antonarakis,Manyuan Long,J. J. Emerson,Esther Betrán,Isabelle Dupanloup,Henrik Kaessmann,Angie S. Hinrichs,Gill Bejerano,Terrence S. Furey,Rachel A. Harte,Brian J. Raney,Adam Siepel,W. James Kent,David Haussler,Eduardo Eyras,Robert Castelo,Josep F. Abril,Sergi Castellano,Francisco Camara,Genís Parra,Roderic Guigó,Guillaume Bourque,Glenn Tesler,Pavel A. Pevzner,Arian F.A. Smit,Lucinda Fulton,Elaine R. Mardis,Richard K. Wilson +174 more
TL;DR: A draft genome sequence of the red jungle fowl, Gallus gallus, provides a new perspective on vertebrate genome evolution, while also improving the annotation of mammalian genomes.
Journal ArticleDOI
Comparative genomics reveals insights into avian genome evolution and adaptation.
Guojie Zhang,Guojie Zhang,Cai Li,Qiye Li,Bo Li,Denis M. Larkin,Chul Hee Lee,Jay F. Storz,Agostinho Antunes,Matthew J. Greenwold,Robert W. Meredith,Anders Ödeen,Jie Cui,Qi Zhou,Luohao Xu,Hailin Pan,Zongji Wang,Lijun Jin,Pei Zhang,Haofu Hu,Wei Yang,Jiang Hu,Jin Xiao,Zhikai Yang,Yang Liu,Qiaolin Xie,Hao Yu,Jinmin Lian,Ping Wen,Fang Zhang,Hui Li,Yongli Zeng,Zijun Xiong,Shiping Liu,Long Zhou,Zhiyong Huang,Na An,Jie Wang,Qiumei Zheng,Yingqi Xiong,Guangbiao Wang,Bo Wang,Jingjing Wang,Yu Fan,Rute R. da Fonseca,Alonzo Alfaro-Núñez,Mikkel Schubert,Ludovic Orlando,Tobias Mourier,Jason T. Howard,Ganeshkumar Ganapathy,Andreas R. Pfenning,Osceola Whitney,Miriam V. Rivas,Erina Hara,Julia Smith,Marta Farré,Jitendra Narayan,Gancho T. Slavov,Michael N Romanov,Rui Borges,João Paulo Machado,Imran Khan,Mark S. Springer,John Gatesy,Federico G. Hoffmann,Juan C. Opazo,Olle Håstad,Roger H. Sawyer,Heebal Kim,Kyu-Won Kim,Hyeon Jeong Kim,Seoae Cho,Ning Li,Yinhua Huang,Michael William Bruford,Xiangjiang Zhan,Andrew Dixon,Mads F. Bertelsen,Elizabeth P. Derryberry,Wesley C. Warren,Richard K. Wilson,Shengbin Li,David A. Ray,Richard E. Green,Stephen J. O'Brien,Darren K. Griffin,Warren E. Johnson,David Haussler,Oliver A. Ryder,Eske Willerslev,Gary R. Graves,Per Alström,Jon Fjeldså,David P. Mindell,Scott V. Edwards,Edward L. Braun,Carsten Rahbek,David W. Burt,Peter Houde,Yong Zhang,Huanming Yang,Jian Wang,Erich D. Jarvis,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Jun Wang +106 more
TL;DR: This work explored bird macroevolution using full genomes from 48 avian species representing all major extant clades to reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits.
Journal ArticleDOI
The genome of a songbird
Wesley C. Warren,David F. Clayton,Hans Ellegren,Arthur P. Arnold,LaDeana W. Hillier,Axel Künstner,Steve Searle,Simon D. M. White,Albert J. Vilella,Susan Fairley,Andreas Heger,Lesheng Kong,Chris P. Ponting,Erich D. Jarvis,Claudio V. Mello,Patrick Minx,Peter V. Lovell,Tarciso A. F. Velho,Margaret Ferris,Christopher N. Balakrishnan,Saurabh Sinha,Charles Blatti,Sarah E. London,Yun Li,Ya-Chi Lin,Jimin George,Jonathan V. Sweedler,Bruce R. Southey,Preethi H. Gunaratne,Michael E. Watson,Kiwoong Nam,Niclas Backström,Linnéa Smeds,Benoit Nabholz,Yuichiro Itoh,Osceola Whitney,Andreas R. Pfenning,Jason T. Howard,Martin Völker,Benjamin M. Skinner,Darren K. Griffin,Liang Ye,William M. McLaren,Paul Flicek,Víctor Quesada,Gloria Velasco,Carlos López-Otín,Xose S. Puente,Tsviya Olender,Doron Lancet,Arian F.A. Smit,Robert Hubley,Miriam K. Konkel,Jerilyn A. Walker,Mark A. Batzer,Wanjun Gu,David D. Pollock,Lin Chen,Ze Cheng,Evan E. Eichler,Jessica Stapley,Jon Slate,Robert Ekblom,Tim R. Birkhead,Terry Burke,David W. Burt,Constance Scharff,Iris Adam,Hugues Richard,Marc Sultan,Alexey Soldatov,Hans Lehrach,Scott V. Edwards,Shiaw-Pyng Yang,XiaoChing Li,Tina Graves,Lucinda Fulton,Joanne O. Nelson,Asif T. Chinwalla,Shunfeng Hou,Elaine R. Mardis,Richard K. Wilson +81 more
TL;DR: This work shows that song behaviour engages gene regulatory networks in the zebra finch brain, altering the expression of long non-coding RNAs, microRNAs, transcription factors and their targets and shows evidence for rapid molecular evolution in the songbird lineage of genes that are regulated during song experience.
Journal ArticleDOI
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Rami A. Dalloul,Julie A. Long,Aleksey V. Zimin,Luqman Aslam,Kathryn Beal,Le Ann Blomberg,Pascal Bouffard,David W. Burt,Oswald Crasta,Richard P. M. A. Crooijmans,Kristal L. Cooper,Roger A. Coulombe,Supriyo De,Mary E. Delany,Jerry B. Dodgson,Jennifer J Dong,Clive Evans,Karin M. Frederickson,Paul Flicek,Liliana Florea,Otto Folkerts,Martien A. M. Groenen,Tim Harkins,Javier Herrero,Steve Hoffmann,Hendrik-Jan Megens,Andrew Jiang,Pieter J. de Jong,Peter K. Kaiser,Heebal Kim,Kyu-Won Kim,Sungwon Kim,David Langenberger,Mi-Kyung Lee,Taeheon Lee,Shrinivasrao P. Mane,Guillaume Marçais,Manja Marz,Manja Marz,A. P. McElroy,Thero Modise,Mikhail Nefedov,Cedric Notredame,Ian R. Paton,William S. Payne,Geo Pertea,Dennis Prickett,Daniela Puiu,Dan Qioa,Emanuele Raineri,Magali Ruffier,Steven L. Salzberg,Michael C. Schatz,Chantel F. Scheuring,Carl J. Schmidt,Steven Schroeder,Stephen M. J. Searle,Edward J. Smith,Jacqueline Smith,Tad S. Sonstegard,Peter F. Stadler,Hakim Tafer,Hakim Tafer,Zhijian Jake Tu,Curtis P. Van Tassell,Albert J. Vilella,Kelly P. Williams,James A. Yorke,Liqing Zhang,Hong-Bin Zhang,Xiaojun Zhang,Yang Zhang,Kent M. Reed +72 more
TL;DR: The combined application of next-generation sequencing platforms has provided an economical approach to unlocking the potential of the turkey genome.
Journal ArticleDOI
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
Gane Ka-Shu Wong,Gane Ka-Shu Wong,Gane Ka-Shu Wong,Bin Liu,Jun Wang,Jun Wang,Yong Zhang,Yong Zhang,Xu Yang,Zengjin Zhang,Qingshun Meng,Jun Zhou,Dawei Li,Jingjing Zhang,Peixiang Ni,Songgang Li,Songgang Li,Longhua Ran,Heng Li,Jianguo Zhang,Ruiqiang Li,Shengting Li,Hongkun Zheng,Wei Lin,Guangyuan Li,Xiaoling Wang,Wenming Zhao,Jun Li,Chen Ye,Mingtao Dai,Jue Ruan,Yan Zhou,Yuanzhe Li,Ximiao He,Yunze Zhang,Jing Wang,Jing Wang,Xiangang Huang,Wei Tong,Jie Chen,Jia Ye,Jia Ye,Chen Chen,Ning Wei,Guoqing Li,Le Dong,Fengdi Lan,Yongqiao Sun,Zhenpeng Zhang,Zheng Yang,Yingpu Yu,Yanqing Huang,Dandan He,Yan Xi,Dong Wei,Qiuhui Qi,Wenjie Li,Jianping Shi,Miaoheng Wang,Fei Xie,Jianjun Wang,Xiaowei Zhang,Pei Wang,Yiqiang Zhao,Ning Li,Ning Yang,Wei Dong,Songnian Hu,Changqing Zeng,Wei-Mou Zheng,Bailin Hao,LaDeana W. Hillier,Shiaw Pyng Yang,Wesley C. Warren,Richard K. Wilson,Mikael Brandström,Hans Ellegren,Richard P. M. A. Crooijmans,Jan J. van der Poel,Henk Bovenhuis,Martien A. M. Groenen,Ivan Ovcharenko,Laurie Gordon,Laurie Gordon,Lisa Stubbs,Susan Lucas,Tijana Glavina,Andrea Aerts,Peter K. Kaiser,Lisa Rothwell,John R. Young,Sally L. Rogers,Brian A Walker,Andy van Hateren,James C. Kaufman,Nat Bumstead,Susan J. Lamont,Huaijun Zhou,Paul M Hocking,David R. Morrice,Dirk-Jan de Koning,Andy Law,Neil Bartley,David W. Burt,Henry D. Hunt,Hans H. Cheng,Ulrika Gunnarsson,Per Wahlberg,Leif Andersson,Leif Andersson,Ellen Kindlund,Martti T. Tammi,Martti T. Tammi,Björn Andersson,Caleb Webber,Chris P. Ponting,Ian M. Overton,Paul E. Boardman,Haizhou Tang,Simon J. Hubbard,Stuart A. Wilson,Jun Yu,Jun Yu,Jian Wang,Jian Wang,Huanming Yang,Huanming Yang +126 more
TL;DR: This map is based on a comparison of the sequences of three domestic chicken breeds with that of their wild ancestor, red jungle fowl, and indicates that at least 90% of the variant sites are true SNPs, and at least 70% are common SNPs that segregate in many domestic breeds.