P
Paul B. Frandsen
Researcher at Brigham Young University
Publications - 66
Citations - 7438
Paul B. Frandsen is an academic researcher from Brigham Young University. The author has contributed to research in topics: Genome & Biology. The author has an hindex of 16, co-authored 49 publications receiving 5039 citations. Previous affiliations of Paul B. Frandsen include Smithsonian Institution & Rutgers University.
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Journal ArticleDOI
PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses.
TL;DR: PartitionFinder 2 is a program for automatically selecting best-fit partitioning schemes and models of evolution for phylogenetic analyses that includes the ability to analyze morphological datasets, new methods to analyze genome-scale datasets, and new output formats to facilitate interoperability with downstream software.
Journal ArticleDOI
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof,Shanlin Liu,Karen Meusemann,Ralph S. Peters,Alexander Donath,Christoph Mayer,Paul B. Frandsen,Jessica L. Ware,Tomas Flouri,Rolf G. Beutel,Oliver Niehuis,Malte Petersen,Fernando Izquierdo-Carrasco,Torsten Wappler,Jes Rust,Andre J. Aberer,Ulrike Aspöck,Ulrike Aspöck,Horst Aspöck,Daniela Bartel,Alexander Blanke,Simon Berger,Alexander Böhm,Thomas R. Buckley,Brett Calcott,Junqing Chen,Frank Friedrich,Makiko Fukui,Mari Fujita,Carola Greve,Peter Grobe,Shengchang Gu,Ying Huang,Lars S. Jermiin,Akito Y. Kawahara,Lars Krogmann,Martin Kubiak,Robert Lanfear,Robert Lanfear,Robert Lanfear,Harald Letsch,Yiyuan Li,Zhenyu Li,Jiguang Li,Haorong Lu,Ryuichiro Machida,Yuta Mashimo,Pashalia Kapli,Pashalia Kapli,Duane D. McKenna,Guanliang Meng,Yasutaka Nakagaki,José Luis Navarrete-Heredia,Michael Ott,Yanxiang Ou,Günther Pass,Lars Podsiadlowski,Hans Pohl,Björn M. von Reumont,Kai Schütte,Kaoru Sekiya,Shota Shimizu,Adam Slipinski,Alexandros Stamatakis,Alexandros Stamatakis,Wenhui Song,Xu Su,Nikolaus U. Szucsich,Meihua Tan,Xuemei Tan,Min Tang,Jingbo Tang,Gerald Timelthaler,Shigekazu Tomizuka,Michelle D. Trautwein,Xiaoli Tong,Toshiki Uchifune,Manfred Walzl,Brian M. Wiegmann,Jeanne Wilbrandt,Benjamin Wipfler,Thomas K. F. Wong,Qiong Wu,Gengxiong Wu,Yinlong Xie,Shenzhou Yang,Qing Yang,David K. Yeates,Kazunori Yoshizawa,Qing Zhang,Rui Zhang,Wenwei Zhang,Yunhui Zhang,Jing Zhao,Chengran Zhou,Lili Zhou,Tanja Ziesmann,Shijie Zou,Yingrui Li,Xun Xu,Yong Zhang,Huanming Yang,Jian Wang,Jun Wang,Karl M. Kjer,Xin Zhou +105 more
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Journal ArticleDOI
Genomic architecture and introgression shape a butterfly radiation
Nathaniel B. Edelman,Paul B. Frandsen,Paul B. Frandsen,Michael Miyagi,Bernardo J. Clavijo,John W. Davey,John W. Davey,Rebecca B. Dikow,Gonzalo García-Accinelli,Steven M. Van Belleghem,Nick Patterson,Nick Patterson,Daniel E. Neafsey,Daniel E. Neafsey,Richard Challis,Sujai Kumar,Gilson R. P. Moreira,Camilo Salazar,Mathieu Chouteau,Brian A. Counterman,Riccardo Papa,Riccardo Papa,Mark Blaxter,Robert D. Reed,Kanchon K. Dasmahapatra,Marcus R. Kronforst,Mathieu Joron,Chris D. Jiggins,W. Owen McMillan,Federica Di Palma,Andrew J. Blumberg,John Wakeley,David B. Jaffe,James Mallet +33 more
TL;DR: Tests to distinguish incomplete lineage sorting from introgression indicate that gene flow has obscured several ancient phylogenetic relationships in this group over large swathes of the genome, and a hitherto unknown inversion that traps a color pattern switch locus is identified.
Journal ArticleDOI
Phylogenomics Reveals the Evolutionary Timing and Pattern of Butterflies and Moths
Akito Y. Kawahara,David Plotkin,Marianne Espeland,Karen Meusemann,Karen Meusemann,Emmanuel F. A. Toussaint,Emmanuel F. A. Toussaint,Alexander Donath,Paul B. Frandsen,Paul B. Frandsen,Andreas Zwick,Mario dos Reis,Jesse R. Barber,Ralph S. Peters,Shanlin Liu,Xin Zhou,Christoph Mayer,Lars Podsiadlowski,Caroline Storer,Jayne E. Yack,Bernhard Misof,Jesse W. Breinholt +21 more
TL;DR: It is demonstrated that the most recent common ancestor of Lepidoptera is considerably older than previously hypothesized, and it is shown that multiple lineages of moths independently evolved hearing organs well before the origin of bats, rejecting the hypothesis that lepidopteran hearing organs arose in response to these predators.
Journal ArticleDOI
Dense sampling of bird diversity increases power of comparative genomics.
Shaohong Feng,Josefin Stiller,Yuan Deng,Joel Armstrong,Joel Armstrong,Qi Fang,Andrew Hart Reeve,Duo Xie,Guangji Chen,Chunxue Guo,Brant C. Faircloth,Bent O. Petersen,Zongji Wang,Qi Zhou,Qi Zhou,Mark Diekhans,Mark Diekhans,Wanjun Chen,Sergio Andreu-Sánchez,Ashot Margaryan,Ashot Margaryan,Jason T. Howard,Carole A. Parent,George Pacheco,Mikkel-Holger S. Sinding,Lara Puetz,Emily Cavill,Ângela M. Ribeiro,Leopold Eckhart,Jon Fjeldså,Peter A. Hosner,Robb T. Brumfield,Les Christidis,Mads F. Bertelsen,Thomas Sicheritz-Pontén,Dieter Thomas Tietze,Bruce C. Robertson,Gang Song,Gerald Borgia,Santiago Claramunt,Santiago Claramunt,Irby J. Lovette,Saul J. Cowen,Peter Njoroge,John P. Dumbacher,Oliver A. Ryder,Jérôme Fuchs,Michael Bunce,David W. Burt,Joel Cracraft,Guanliang Meng,Shannon J. Hackett,Peter G. Ryan,Knud A. Jønsson,Ian G. Jamieson,Rute R. da Fonseca,Edward L. Braun,Peter Houde,Siavash Mirarab,Alexander Suh,Alexander Suh,Bengt Hansson,Suvi Ponnikas,Hanna Sigeman,Martin Stervander,Martin Stervander,Paul B. Frandsen,Paul B. Frandsen,Henriette van der Zwan,Rencia van der Sluis,Carina Visser,Christopher N. Balakrishnan,Andrew G. Clark,John W. Fitzpatrick,Reed Bowman,Nancy F. Chen,Alison Cloutier,Timothy B. Sackton,Scott V. Edwards,Dustin J. Foote,Subir B. Shakya,Frederick H. Sheldon,Alain Vignal,André E. R. Soares,Beth Shapiro,Jacob González-Solís,Joan Ferrer-Obiol,Julio Rozas,Marta Riutort,Anna Tigano,Anna Tigano,Vicki L. Friesen,Love Dalén,Araxi O. Urrutia,Araxi O. Urrutia,Tamás Székely,Yang Liu,Michael G. Campana,André Corvelo,Robert C. Fleischer,Kim Rutherford,Neil J. Gemmell,Nicolas Dussex,Nicolas Dussex,Henrik Mouritsen,Nadine Thiele,Kira E. Delmore,Kira E. Delmore,Miriam Liedvogel,Andre Franke,Marc P. Hoeppner,Oliver Krone,Adam M. Fudickar,Borja Milá,Ellen D. Ketterson,Andrew E. Fidler,Guillermo Friis,Ángela M. Parody-Merino,Phil F. Battley,Murray P. Cox,Nicholas Costa Barroso Lima,Francisco Prosdocimi,Thomas L. Parchman,Barney A. Schlinger,Bette A. Loiselle,John G. Blake,Haw Chuan Lim,Haw Chuan Lim,Lainy B. Day,Matthew J. Fuxjager,Maude W. Baldwin,Michael J. Braun,Morgan Wirthlin,Rebecca B. Dikow,T. Brandt Ryder,Glauco Camenisch,Lukas F. Keller,Jeffrey M. DaCosta,Mark E. Hauber,Matthew I. M. Louder,Christopher C. Witt,Jimmy A. McGuire,Joann Mudge,Libby C. Megna,Matthew D. Carling,Biao Wang,Scott A. Taylor,Glaucia Del-Rio,Alexandre Aleixo,Ana Tereza Ribeiro de Vasconcelos,Claudio V. Mello,Jason T. Weir,Jason T. Weir,David Haussler,David Haussler,Qiye Li,Huanming Yang,Jian Wang,Fumin Lei,Carsten Rahbek,M. Thomas P. Gilbert,M. Thomas P. Gilbert,Gary R. Graves,Gary R. Graves,Erich D. Jarvis,Erich D. Jarvis,Erich D. Jarvis,Benedict Paten,Benedict Paten,Guojie Zhang +169 more
TL;DR: The densely sampled alignment provides a single-base-pair map of selection, has more than doubled the fraction of bases that are confidently predicted to be under conservation and reveals extensive patterns of weak selection in predominantly non-coding DNA.