Journal ArticleDOI
Complete Dna-Sequence Of Yeast Chromosome-Xi
Bernard Dujon,Despina Alexandraki,Bruno André,W. Ansorge,Victoriano Baladrón,Juan P. G. Ballesta,Andrea Banrevi,P. A. Bolle,Monique Bolotin-Fukuhara,Peter Bossier,Germán Bou,J. Boyer,M. J. Buitrago,Geneviève Chéret,Laurence Colleaux,B. Dalgnan-Fornier,F. del Rey,Caroline Dion,H. Domdey,A. Düsterhöft,S. Düsterhus,K. D. Entian,Holger Erfle,Pedro F. Esteban,Heidi Feldmann,L. Fernandes,G. M. Fobo,C. Fritz,Hiroshi Fukuhara,C. Gabel,L. Gaillon,J. M. Carcia-Cantalejo,José J. García-Ramírez,Manda E. Gent,Marjan Ghazvini,Marjan Ghazvini,André Goffeau,A. Gonzaléz,Dietmar Grothues,Paulo Guerreiro,Johannes H. Hegemann,N. Hewitt,François Hilger,Cornelis P. Hollenberg,O. Horaitis,O. Horaitis,Keith J. Indge,Alain Jacquier,C. M. James,J. C. Jauniaux,J. C. Jauniaux,A. Jimenez,H. Keuchel,L. Kirchrath,K. Kleine,Peter Kötter,Pierre Legrain,S. Liebl,Edward J. Louis,A. Maia e Silva,Christian Marck,A.-L. Monnier,D. Mostl,Sylke Müller,B. Obermaier,Stephen G. Oliver,C. Pallier,Steve Pascolo,Steve Pascolo,Friedhelm Pfeiffer,Peter Philippsen,Rudi J. Planta,Fritz M. Pohl,Thomas Pohl,Regina Pohlmann,Daniel Portetelle,Bénédicte Purnelle,V. Puzos,M. Ramezani Rad,S. W. Rasmussen,Miguel Remacha,José L. Revuelta,Guy-Franck Richard,Martin Rieger,Claudina Rodrigues-Pousada,Matthias Rose,Thomas Rupp,Maria A. Santos,Christian Schwager,Christoph Wilhelm Sensen,J. Skala,J. Skala,Helena Soares,Frédéric Sor,J. Stegemann,Hervé Tettelin,Alain R. Thierry,M. Tzermia,L. A. Urrestarazu,L Van Dyck,J. C. van Vliet-Reedijk,Michèle Valens,M. Vandenbo,C. Vilela,Stephan Vissers,D. von Wettstein,H. Voss,Stefan Wiemann,G. Xu,Jürgen Zimmermann,M. Haasemann,I. Becker,Hans-Werner Mewes +112 more
TLDR
The complete DNA sequence of the yeast Saccharomyces cerevisiae chromosome XI has been determined, and the 666,448-base-pair sequence has revealed general chromosome patterns.Abstract:
The complete DNA sequence of the yeast Saccharomyces cerevisiae chromosome XI has been determined. In addition to a compact arrangement of potential protein coding sequences, the 666,448-base-pair sequence has revealed general chromosome patterns; in particular, alternating regional variations in average base composition correlate with variations in local gene density along the chromosome. Significant discrepancies with the previously published genetic map demonstrate the need for using independent physical mapping criteria.read more
Citations
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New heterologous modules for classical or PCR‐based gene disruptions in Saccharomyces cerevisiae
TL;DR: A dominant resistance module, for selection of S. cerevisiae transformants, which entirely consists of heterologous DNA is constructed and tested, and some kanMX modules are flanked by 470 bp direct repeats, promoting in vivo excision with frequencies of 10–3–10–4.
Journal ArticleDOI
Sequencing and comparison of yeast species to identify genes and regulatory elements
TL;DR: A comparative analysis of the yeast Saccharomyces cerevisiae based on high-quality draft sequences of three related species, which inferred a putative function for most of these motifs, and provided insights into their combinatorial interactions.
Journal ArticleDOI
The genome sequence of the filamentous fungus Neurospora crassa
James E. Galagan,Sarah E. Calvo,Katherine A. Borkovich,Eric U. Selker,Nick O. Read,David B. Jaffe,William Fitzhugh,Li-Jun Ma,Serge Smirnov,Seth Purcell,Bushra Rehman,Timothy Elkins,Reinhard Engels,Shunguang Wang,Cydney B. Nielsen,Jonathan Butler,Matthew G. Endrizzi,Dayong Qui,Peter Ianakiev,Deborah Bell-Pedersen,Mary Anne Nelson,Margaret Werner-Washburne,Claude P. Selitrennikoff,John A. Kinsey,Edward L. Braun,Alex Zelter,Alex Zelter,Ulrich Schulte,Gregory O. Kothe,Gregory Jedd,Werner Mewes,Chuck Staben,Edward M. Marcotte,David Greenberg,Alice Roy,Karen Foley,Jerome Naylor,Nicole Stange-Thomann,Robert Barrett,Sante Gnerre,Michael Kamal,Manolis Kamvysselis,Evan Mauceli,Cord Bielke,Stephen Rudd,Dmitrij Frishman,Svetlana Krystofova,Carolyn G. Rasmussen,Robert L. Metzenberg,David D. Perkins,Scott Kroken,Carlo Cogoni,Giuseppe Macino,David E. A. Catcheside,Weixi Li,Robert J. Pratt,Stephen A. Osmani,Colin P.C. DeSouza,Louise Glass,Marc J. Orbach,J. Andrew Berglund,Rodger B. Voelker,Oded Yarden,Michael Plamann,Stephan Seiler,Jay C. Dunlap,Alan Radford,Rodolfo Aramayo,Donald O. Natvig,Lisa A. Alex,Gertrud Mannhaupt,Daniel J. Ebbole,Michael Freitag,Ian T. Paulsen,Matthew S. Sachs,Eric S. Lander,Chad Nusbaum,Bruce W. Birren +77 more
TL;DR: A high-quality draft sequence of the N. crassa genome is reported, suggesting that RIP has had a profound impact on genome evolution, greatly slowing the creation of new genes through genomic duplication and resulting in a genome with an unusually low proportion of closely related genes.
Journal ArticleDOI
Common Principles of Protein Translocation Across Membranes
TL;DR: Most major systems that transport proteins across a membrane share the following features: an amino-terminal transient signal sequence on the transported protein, a targeting system on the cis side of the membrane, a hetero-oligomeric transmembrane channel, a peripherally attached protein translocation motor that is powered by the hydrolysis of nucleoside triphosphate.
Proceedings ArticleDOI
A new Voronoi-based surface reconstruction algorithm
TL;DR: The algorthim is the first for this problem with provable guarantees for the reconstruction of surfaces from unorganized sample points in IR3, based on the three-dimensional Voronoi diagram.
References
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TL;DR: A method for the partial automation of DNA sequence analysis by means of a fluorophore covalently attached to the oligonucleotide primer used in enzymaticDNA sequence analysis.
Journal ArticleDOI
2.2 Mb of contiguous nucleotide sequence from chromosome III of C. elegans
Richard K. Wilson,R. Ainscough,Karen E. Anderson,C. Baynes,Mary Berks,James K. Bonfield,James Burton,M. Connell,T. Copsey,John A. Cooper,Alan Coulson,M. Craxton,S. Dear,Zijin Du,Richard Durbin,Anthony Favello,A. Fraser,Lucinda Fulton,A. Gardner,Philip Green,T. Hawkins,LaDeana W. Hillier,M. Jier,L. Johnston,Martin K. Jones,J. Kershaw,J. Kirsten,N. Laisster,Phil Latreille,J. Lightning,C. Lloyd,Beverley J. Mortimore,M. O'Callaghan,J. Parsons,C. Percy,L. Rifken,A. Roopra,D. Saunders,Ratna Shownkeen,M. Sims,N. Smaldon,Andrew J.H. Smith,Michael D. Smith,Erik L. L. Sonnhammer,Rodger Staden,John Sulston,Jean Thierry-Mieg,K. Thomas,M. Vaudin,K. Vaughan,Robert H. Waterston,A. Watson,L. Weinstock,J. Wilkinson-Sproat,P. Wohldman +54 more
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Target of rapamycin in yeast, TOR2, is an essential phosphatidylinositol kinase homolog required for G1 progression
Jeannette Kunz,Ruben Henriquez,Ulrich Schneider,Maja Deuter-Reinhard,N.Rao Movva,Michael N. Hall +5 more
TL;DR: The results suggest that 3-phosphorylated phosphoinositides, whose physiological significance has not been determined, are an important signal in cell cycle activation in yeast and may act in a signalTransduction pathway similar to the interleukin-2 signal transduction pathway in T cells.
Journal ArticleDOI
The complete DNA sequence of yeast chromosome III.
Stephen G. Oliver,Q. J. M. van der Aart,M. L. Agostoni-Carbone,Michel Aigle,Lilia Alberghina,Despina Alexandraki,G. Antoine,Rashida Anwar,Juan P. G. Ballesta,Paule Bénit,Gilbert Berben,Elisabetta Bergantino,N. Biteau,P. A. Bolle,Monique Bolotin-Fukuhara,Anthony G. A. Brown,Alistair J. P. Brown,J. M. Buhler,C. Carcano,Giovanna Carignani,Håkan Cederberg,R. Chanet,Roland Contreras,Marc Crouzet,B. Daignan-Fornier,E. Defoor,M. Delgado,Jan Demolder,C. Doira,Evelyne Dubois,Bernard Dujon,A. Düsterhöft,D. Erdmann,M. Esteban,F. Fabre,Cécile Fairhead,Gérard Faye,Horst Feldmann,Walter Fiers,M. C. Francingues-Gaillard,L. Franco,Laura Frontali,H. Fukuhara,L. J. Fuller,P. Galland,Manda E. Gent,D. Gigot,Véronique Gilliquet,Glansdorff Nn,André Goffeau,M. Grenson,P. Grisanti,Leslie A. Grivell,M. de Haan,M. Haasemann,D. Hatat,Janet Hoenicka,Johannes H. Hegemann,C. J. Herbert,François Hilger,Stefan Hohmann,Cornelis P. Hollenberg,K. Huse,F. Iborra,K. J. Indje,K. Isono,C. Jacq,M. Jacquet,C. M. James,J. C. Jauniaux,Y. Jia,Alberto Jiménez,A. Kelly,U. Kleinhans,P Kreisl,G. Lanfranchi,C Lewis,C. G. vanderLinden,G Lucchini,K Lutzenkirchen,M.J. Maat,L. Mallet,G. Mannhaupet,Enzo Martegani,A. Mathieu,C. T. C. Maurer,David J. McConnell,R. A. McKee,F. Messenguy,Hans-Werner Mewes,Francis Molemans,M. A. Montague,M. Muzi Falconi,L. Navas,Carol S. Newlon,D. Noone,C. Pallier,L. Panzeri,Bruce M. Pearson,J. Perea,Peter Philippsen,A. Pierard,Rudi J. Planta,Paolo Plevani,B. Poetsch,Fritz M. Pohl,B. Purnelle,M. Ramezani Rad,S. W. Rasmussen,A. Raynal,Miguel Remacha,P. Richterich,Aki Roberts,F. Rodriguez,E. Sanz,I. Schaaff-Gerstenschlager,Bart Scherens,Bertold Schweitzer,Y. Shu,J. Skala,Piotr P. Slonimski,F. Sor,C. Soustelle,R. Spiegelberg,Lubomira Stateva,H. Y. Steensma,S. Steiner,Agnès Thierry,George Thireos,Maria Tzermia,L. A. Urrestarazu,Giorgio Valle,I. Vetter,J. C. van Vliet-Reedijk,Marleen Voet,Guido Volckaert,P. Vreken,H. Wang,John R. Warmington,D. von Wettstein,Barton Luke Wicksteed,C. Wilson,H. Wurst,G. Xu,A. Yoshikawa,Friedrich K. Zimmermann,J. G. Sgouros +146 more
TL;DR: The entire DNA sequence of chromosome III of the yeast Saccharomyces cerevisiae has been determined, which is the first complete sequence analysis of an entire chromosome from any organism.