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NIH Image to ImageJ: 25 years of image analysis

TLDR
The origins, challenges and solutions of NIH Image and ImageJ software are discussed, and how their history can serve to advise and inform other software projects.
Abstract
For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.

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Tau co-organizes dynamic microtubule and actin networks

TL;DR: Tau, a neuronal microtubule-associated protein, binds to microtubules and actin simultaneously, promoting in vitro co-organization and coupled growth of both networks, enabling a coordination of the two cytoskeletons that might be essential in various neuronal contexts.
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Beclin1-driven autophagy modulates the inflammatory response of microglia via NLRP3

TL;DR: The notion that selective autophagy can impact microglia activation by modulating IL‐1beta and IL‐18 production via NLRP3 degradation is supported and the mechanism how impaired autophagic could contribute to neuroinflammation in Alzheimer's disease is presented.
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Central cell-derived peptides regulate early embryo patterning in flowering plants.

TL;DR: It is demonstrated that the second female gamete and its sexually derived endosperm regulate early embryonic patterning in flowering plants and synergistically with the receptor-like kinase SHORT SUSPENSOR to promote suspensor elongation through the YODA mitogen-activated protein kinase pathway.
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Crystal Structure of Aspirin-Acetylated Human Cyclooxygenase-2: Insight into the Formation of Products with Reversed Stereochemistry.

TL;DR: Structural observations and functional analysis of the S530T/G533V double mutant suggest a working hypothesis for the generation of 15R-HETE by aspirin-acetylated COX-2, indicating that detergent and lipid binding within the membrane-binding domain of the enzyme alters the rate of the acetylation reaction in vitro.
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Novel high-strength, low-alloys Zn-Mg (< 0.1 wt% Mg) and their arterial biodegradation

TL;DR: Zn-08Mg alloy appears to be the first formulated biodegradable material that satisfies benchmark values desirable for endovascular stenting, but the alloy reveals signs of age hardening and strain rate sensitivity, which need to be addressed before using this metal for stenting.
References
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Journal ArticleDOI

Fiji: an open-source platform for biological-image analysis

TL;DR: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis that facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system.
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CellProfiler: image analysis software for identifying and quantifying cell phenotypes

TL;DR: The first free, open-source system designed for flexible, high-throughput cell image analysis, CellProfiler is described, which can address a variety of biological questions quantitatively.
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ImageJ for microscopy

TL;DR: The near-comprehensive range of import filters that allow easy access to image and meta-data, a broad suite processing and analysis routine, and enthusiastic support from a friendly mailing list are invaluable for all microscopy labs and facilities-not just those on a budget.
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Computer control of microscopes using µManager.

TL;DR: This unit provides step‐by‐step protocols describing how to get started working with µManager, as well as some starting points for advanced use of the software.
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Icy: an open bioimage informatics platform for extended reproducible research

TL;DR: Icy is a collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless development of sophisticated imaging workflows.
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