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NIH Image to ImageJ: 25 years of image analysis

TLDR
The origins, challenges and solutions of NIH Image and ImageJ software are discussed, and how their history can serve to advise and inform other software projects.
Abstract
For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.

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Imaging cellular structures in super-resolution with SIM, STED and Localisation Microscopy: A practical comparison.

TL;DR: In this article, the authors compare the individual strengths and weaknesses of SIM, STED, and SMLM by imaging a variety of different subcellular structures in fixed cells.
Journal ArticleDOI

The Arabidopsis Cellulose Synthase Complex: A Proposed Hexamer of CESA Trimers in an Equimolar Stoichiometry

TL;DR: A 1:1:1 stoichiometry is shown between the three Arabidopsis thaliana secondary cell wall isozymes, a crucial advance in understanding how CESAs integrate to form higher order complexes, which is a key determinate of cellulose microfibril and cell wall properties.
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Breaking the selectivity-uptake trade-off of photoimmunoconjugates with nanoliposomal irinotecan for synergistic multi-tier cancer targeting

TL;DR: A novel photoimmunoconjugate-nanoliposome (PIC-Nal-IRI) comprising of three clinically used agents offers a promising strategy to overcome the selectivity-uptake trade-off, improvephotoimmunotherapy efficacy, and enable multi-tier cancer targeting.
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A High-Throughput Organoid Microinjection Platform to Study Gastrointestinal Microbiota and Luminal Physiology.

TL;DR: Development and validation of a high-throughput organoid microinjection system for cargo delivery to the organoid lumen and high-content sampling and the requirement to normalize for organoid growth for accurate assessment of barrier function are reported.
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Structure/property (constitutive and spallation response) of additively manufactured 316L stainless steel

TL;DR: In this paper, cylindrical samples of 316L SS were produced using a LENS MR-7 laser additive manufacturing system from Optomec (Albuquerque, NM) equipped with a 1.kW Yb-fiber laser.
References
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Journal ArticleDOI

Fiji: an open-source platform for biological-image analysis

TL;DR: Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis that facilitates the transformation of new algorithms into ImageJ plugins that can be shared with end users through an integrated update system.
Journal ArticleDOI

CellProfiler: image analysis software for identifying and quantifying cell phenotypes

TL;DR: The first free, open-source system designed for flexible, high-throughput cell image analysis, CellProfiler is described, which can address a variety of biological questions quantitatively.
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ImageJ for microscopy

TL;DR: The near-comprehensive range of import filters that allow easy access to image and meta-data, a broad suite processing and analysis routine, and enthusiastic support from a friendly mailing list are invaluable for all microscopy labs and facilities-not just those on a budget.
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Computer control of microscopes using µManager.

TL;DR: This unit provides step‐by‐step protocols describing how to get started working with µManager, as well as some starting points for advanced use of the software.
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Icy: an open bioimage informatics platform for extended reproducible research

TL;DR: Icy is a collaborative bioimage informatics platform that combines a community website for contributing and sharing tools and material, and software with a high-end visual programming framework for seamless development of sophisticated imaging workflows.
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