NIH Image to ImageJ: 25 years of image analysis
TLDR
The origins, challenges and solutions of NIH Image and ImageJ software are discussed, and how their history can serve to advise and inform other software projects.Abstract:
For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.read more
Citations
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Whole-central nervous system functional imaging in larval Drosophila
William C. Lemon,Stefan R. Pulver,Burkhard Höckendorf,Katie McDole,Kristin Branson,Jeremy Freeman,Philipp J. Keller +6 more
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Single-Cell Analysis of the Muscle Stem Cell Hierarchy Identifies Heterotypic Communication Signals Involved in Skeletal Muscle Regeneration
Andrea J. De Micheli,Emily J. Laurilliard,Charles L. Heinke,Hiranmayi Ravichandran,Paula Fraczek,Sharon Soueid-Baumgarten,Iwijn De Vlaminck,Olivier Elemento,Benjamin D. Cosgrove +8 more
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The burden of rare diseases.
TL;DR: This work reviews the existing literature on rare disease numbers, in an attempt to demystify the subject and summarize data pertaining to known number and cumulative prevalence of rare diseases, mortality, and orphan drug numbers.
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The Coral Trait Database, a curated database of trait information for coral species from the global oceans
Joshua S. Madin,Kristen G. Anderson,Magnus Heide Andreasen,Tom C. L. Bridge,Tom C. L. Bridge,Stephen D. Cairns,Sean R. Connolly,Emily S. Darling,Marcela Diaz,Daniel S. Falster,Erik C. Franklin,Ruth D. Gates,Mia O. Hoogenboom,Danwei Huang,Sally A. Keith,Matthew A. Kosnik,Chao-Yang Kuo,Janice M. Lough,Janice M. Lough,Catherine E. Lovelock,Osmar J. Luiz,Julieta C. Martinelli,Toni Mizerek,John M. Pandolfi,Xavier Pochon,Morgan S. Pratchett,Hollie M. Putnam,T. Edward Roberts,Michael Stat,Carden C. Wallace,Elizabeth Widman,Andrew H. Baird +31 more
TL;DR: The overall goal is for the Coral Trait Database to become an open-source, community-led data clearinghouse that accelerates coral reef research.
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SIMA: Python software for analysis of dynamic fluorescence imaging data.
TL;DR: SIMA, an open source Python package that facilitates common analysis tasks related to fluorescence imaging, and a graphical user interface (GUI) for manual editing of the automatically segmented ROIs and automated registration of ROIs across multiple imaging datasets.
References
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