University of Bordeaux

About: University of Bordeaux is a education organization based out in Bordeaux, France. It is known for research contribution in the topics: Population & Laser. The organization has 28811 authors who have published 55536 publications receiving 1619635 citations. The organization is also known as: UB.

Live benthic foraminiferal faunas from the Bay of Biscay: faunal density, composition, and microhabitats

Abstract: In the meso-oligotrophic Bay of Biscay, a diminishing downward organic matter flux with depth is accompanied by an important decrease of the live foraminiferal density. Although bottom water oxygenation is not directly influenced by organic matter input, the oxygenation of interstitial waters and the primary redox fronts do change in response to variations of the organic matter flux. The occurrence of deep and intermediate infaunal taxa can be linked to fundamental redox fronts and putative associated bacterial consortia. Our data are in agreement with the TROX-model, which explains the benthic foraminiferal microhabitat as a function of organic flux and benthic ecosystem oxygenation. Both the depth of the principle redox fronts and the microhabitat of deep infaunal species show important increases with depth. At the deepest oligotrophic stations, deep infaunal faunas become relatively poor. Therefore, the exported flux of organic matter appears to be the main parameter controlling the composition and the vertical distribution of benthic foraminiferal faunas below the sediment-water interface. The oxygenation of pore waters plays only a minor role. A species-level adaptation of the TROX-model is presented for the Bay of Biscay.

A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma

Abstract: So far, no common environmental and/or phenotypic factor has been associated with melanoma and renal cell carcinoma (RCC). The known risk factors for melanoma include sun exposure, pigmentation and nevus phenotypes; risk factors associated with RCC include smoking, obesity and hypertension. A recent study of coexisting melanoma and RCC in the same patients supports a genetic predisposition underlying the association between these two cancers. The microphthalmia-associated transcription factor (MITF) has been proposed to act as a melanoma oncogene; it also stimulates the transcription of hypoxia inducible factor (HIF1A), the pathway of which is targeted by kidney cancer susceptibility genes. We therefore proposed that MITF might have a role in conferring a genetic predisposition to co-occurring melanoma and RCC. Here we identify a germline missense substitution in MITF (Mi-E318K) that occurred at a significantly higher frequency in genetically enriched patients affected with melanoma, RCC or both cancers, when compared with controls. Overall, Mi-E318K carriers had a higher than fivefold increased risk of developing melanoma, RCC or both cancers. Codon 318 is located in a small-ubiquitin-like modifier (SUMO) consensus site (ΨKXE) and Mi-E318K severely impaired SUMOylation of MITF. Mi-E318K enhanced MITF protein binding to the HIF1A promoter and increased its transcriptional activity compared to wild-type MITF. Further, we observed a global increase in Mi-E318K-occupied loci. In an RCC cell line, gene expression profiling identified a Mi-E318K signature related to cell growth, proliferation and inflammation. Lastly, the mutant protein enhanced melanocytic and renal cell clonogenicity, migration and invasion, consistent with a gain-of-function role in tumorigenesis. Our data provide insights into the link between SUMOylation, transcription and cancer.

SCOTCH: A Software Package for Static Mapping by Dual Recursive Bipartitioning of Process and Architecture Graphs

Abstract: The combinatorial optimization problem of assigning the communicating processes of a parallel program onto a parallel machine so as to minimize its overall execution time is called static mapping.