Virome Characterization of a Collection of S. sclerotiorum from Australia.
Fan Mu,Jiatao Xie,Shufen Cheng,Ming Pei You,Martin J. Barbetti,Jichun Jia,Qianqian Wang,Jiasen Cheng,Yanping Fu,Tao Chen,Daohong Jiang +10 more
TLDR
This is not only the first study to show existence of mycoviruses in S. sclerotinia sclerotiorum in Australia, but highlights how they are widespread and that many novel myc Coviruses occur there.Abstract:
Sclerotinia sclerotiorum is a devastating plant pathogen that attacks numerous economically important broad acre and vegetable crops worldwide. Mycoviruses are widespread viruses that infect fungi, including S. sclerotiorum. As there were no previous reports of the presence of mycoviruses in this pathogen in Australia, studies were undertaken using RNA_Seq analysis to determine the diversity of mycoviruses in 84 Australian S. sclerotiorum isolates collected from various hosts. After RNA sequences were subjected to BLASTp analysis using NCBI database, 285 contigs representing partial or complete genomes of 57 mycoviruses were obtained, and 34 of these (59.6%) were novel viruses. These 57 viruses were grouped into 10 distinct lineages, namely Endornaviridae (four novel mycoviruses), Genomoviridae (isolate of SsHADV-1), Hypoviridae (two novel mycoviruses), Mononegavirales (four novel mycovirusess), Narnaviridae (10 novel mycoviruses), Partitiviridae (two novel mycoviruses), Ourmiavirus (two novel mycovirus), Tombusviridae (two novel mycoviruses), Totiviridae (one novel mycovirus), Tymovirales (five novel mycoviruses), and two non-classified mycoviruses lineages (one Botrytis porri RNA virus 1, one distantly related to Aspergillus fumigatus tetramycovirus-1). Twenty-five mitoviruses were determined and mitoviruses were dominant in the isolates tested. This is not only the first study to show existence of mycoviruses in S. sclerotiorum in Australia, but highlights how they are widespread and that many novel mycoviruses occur there. Further characterization of these mycoviruses is warranted, both in terms of exploring these novel mycoviruses for innovative biocontrol of Sclerotinia diseases and in enhancing our overall knowledge on viral diversity, taxonomy, ecology, and evolution.read more
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2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales
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References
More filters
Journal ArticleDOI
Sclerotinia sclerotiorum (Lib.) de Bary: biology and molecular traits of a cosmopolitan pathogen.
TL;DR: This review summarizes current knowledge of mechanisms employed by the fungus to parasitize its host with emphasis on biology, physiology and molecular aspects of pathogenicity.
Journal ArticleDOI
50-plus years of fungal viruses.
TL;DR: Although many mycoviruses do not have marked effects on their hosts, those that reduce the virulence of their phytopathogenic fungal hosts are of considerable interest for development of novel biocontrol strategies.
Journal ArticleDOI
A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus
Xiao Yu,Bo Li,Yanping Fu,Daohong Jiang,Said A. Ghabrial,Guoqing Li,You-Liang Peng,Jiatao Xie,Jiasen Cheng,Junbin Huang,Xianhong Yi +10 more
TL;DR: The discovery of an ssDNA mycovirus from the plant pathogenic fungus Sclerotinia sclerotiorum enhances the potential of exploring fungal viruses as valuable tools for molecular manipulation of fungi and for plant disease control and expands the knowledge of global virus ecology and evolution.
Journal ArticleDOI
Taxonomy of the order Mononegavirales: update 2016
Claudio L. Afonso,Gaya K. Amarasinghe,Krisztián Bányai,Yīmíng Bào,Christopher F. Basler,Sina Bavari,Nicolás Bejerman,Kim R. Blasdell,François Xavier Briand,Thomas Briese,Alexander Bukreyev,Charles H. Calisher,Kartik Chandran,Jiāsēn Chéng,Anna N. Clawson,Peter L. Collins,Ralf G. Dietzgen,Olga Dolnik,Leslie L. Domier,Ralf Dürrwald,John M. Dye,Andrew J. Easton,Hideki Ebihara,Szilvia L. Farkas,Juliana Freitas-Astúa,Pierre Formenty,Ron A. M. Fouchier,Yanping Fu,Elodie Ghedin,Michael M. Goodin,Roger Hewson,Masayuki Horie,Timothy H. Hyndman,Dàohóng Jiāng,E. W. Kitajima,Gary P. Kobinger,Hideki Kondo,Gael Kurath,Robert A. Lamb,Sergio Lenardon,Eric M. Leroy,C. Li,Xian Dan Lin,Lìjiāng Liú,Ben Longdon,Szilvia Marton,Andrea Maisner,Elke Mühlberger,Sergey V. Netesov,Norbert Nowotny,Norbert Nowotny,Jean L. Patterson,Susan Payne,Janusz T. Paweska,Richard E. Randall,Bertus K. Rima,Paul A. Rota,Dennis Rubbenstroth,Martin Schwemmle,Mang Shi,Sophie J. Smither,Mark D. Stenglein,David M. Stone,Ayato Takada,Calogero Terregino,Robert B. Tesh,Jun Hua Tian,Keizo Tomonaga,Noël Tordo,Jonathan S. Towner,Nikos Vasilakis,Martin Verbeek,Viktor E. Volchkov,Victoria Wahl-Jensen,John A. Walsh,Peter J. Walker,David Wang,Lin-Fa Wang,Thierry Wetzel,Anna E. Whitfield,Jiǎtāo Xiè,Kwok-Yung Yuen,Yong-Zhen Zhang,Jens H. Kuhn +83 more
TL;DR: The updated taxonomy of the order Mononegavirales is presented as now accepted by the International Committee on Taxonomy of Viruses (ICTV).
Journal ArticleDOI
New Insights into Mycoviruses and Exploration for the Biological Control of Crop Fungal Diseases
Jiatao Xie,Daohong Jiang +1 more
TL;DR: In this review, the advantages of using hypovirulence-associated mycoviruses to control crop diseases are discussed, and, as an example, the potential for Sclerotinia sclerotiorum hypovirus-associated DNA virus 1 (SsHADV-1) to control the stem rot of rapeseed is introduced.