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Open AccessJournal ArticleDOI

FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism

TLDR
A brain polyribosome-programmed translation system is developed, revealing that FMRP reversibly stalls ribosomes specifically on its target mRNAs and suggests multiple targets for clinical intervention in FXS and ASD.
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This article is published in Cell.The article was published on 2011-07-22 and is currently open access. It has received 1861 citations till now. The article focuses on the topics: FMR1 & RNA-binding protein.

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Studies on Aplysia neurons suggest treatments for chronic human disorders.

TL;DR: This research on this simple molluscan nervous system may lead to new therapeutic approaches for spinal cord injury, Fragile X syndrome, and genetic learning deficits more generally.
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RNA-Binding Specificity of the Human Fragile X Mental Retardation Protein.

TL;DR: A new method called Motif Identification by Analysis of Simple sequences (MIDAS) to identify single-stranded RNA sequences bound by KH domains is developed, which finds that the FMRP KH0, KH1, and KH2 domains bind weakly to the ssRNA sequences suggesting that they may have evolved to bind more complex RNA structures.
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The World of Stable Ribonucleoproteins and Its Mapping With Grad-Seq and Related Approaches.

TL;DR: In this paper, a function-based ontology of stable RNPs is proposed and discussed how Grad-seq and related approaches transformed our perspective of bacterial and eukaryotic ribonucleoproteins by guiding the discovery of new RNA-binding proteins and unusual classes of noncoding RNAs.
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Where Environment Meets Cognition: A Focus on Two Developmental Intellectual Disability Disorders

TL;DR: Epigenetic studies of IDDs, focusing on DS and FXS, are discussed, and the use of epidrugs in combinatorial therapies for IDDs is discussed.
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Optimization of ribosome profiling using low-input brain tissue from fragile X syndrome model mice

TL;DR: The data reveal that optimal RNase digestion is essential to ensure high quality and reproducibility of ribosome profiling for low-input brain tissue and establish GC content and Ribosome footprint length as quality control metrics forRNase digestion.
References
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Journal ArticleDOI

Controlling the false discovery rate: a practical and powerful approach to multiple testing

TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

TL;DR: By following this protocol, investigators are able to gain an in-depth understanding of the biological themes in lists of genes that are enriched in genome-scale studies.

Biometery: The principles and practice of statistics in biological research

TL;DR: In this paper, the authors present a model for the analysis of variance in a single-classification and two-way and multiway analysis of Variance with the assumption of correlation.
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Biometry: The Principles and Practice of Statistics in Biological Research

TL;DR: In this paper, the authors present a model for the analysis of variance in a single-classification and two-way and multiway analysis of Variance with the assumption of correlation.
Journal ArticleDOI

Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

TL;DR: The hierarchical model of Lonnstedt and Speed (2002) is developed into a practical approach for general microarray experiments with arbitrary numbers of treatments and RNA samples and the moderated t-statistic is shown to follow a t-distribution with augmented degrees of freedom.
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