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Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution

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TLDR
The human–chimpanzee split is dated to at least 7–8 million years and the population split between Neanderthals and modern humans to 400,000–800,000 y ago, which suggests that molecular divergence dates may not be in conflict with the attribution of 6- to 7-million-y-old fossils to the human lineage and 400,,000-Y-old bones to the Neanderthal lineage.
Abstract
Fossils and molecular data are two independent sources of information that should in principle provide consistent inferences of when evolutionary lineages diverged. Here we use an alternative approach to genetic inference of species split times in recent human and ape evolution that is independent of the fossil record. We first use genetic parentage information on a large number of wild chimpanzees and mountain gorillas to directly infer their average generation times. We then compare these generation time estimates with those of humans and apply recent estimates of the human mutation rate per generation to derive estimates of split times of great apes and humans that are independent of fossil calibration. We date the human–chimpanzee split to at least 7–8 million years and the population split between Neanderthals and modern humans to 400,000–800,000 y ago. This suggests that molecular divergence dates may not be in conflict with the attribution of 6- to 7-million-y-old fossils to the human lineage and 400,000-y-old fossils to the Neanderthal lineage.

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Journal ArticleDOI

The complete genome sequence of a Neanderthal from the Altai Mountains

TL;DR: It is shown that interbreeding, albeit of low magnitude, occurred among many hominin groups in the Late Pleistocene and a definitive list of substitutions that became fixed in modern humans after their separation from the ancestors of Neanderthals and Denisovans is established.
Journal ArticleDOI

Robust and scalable inference of population history from hundreds of unphased whole genomes

TL;DR: SMC++ is presented, a new statistical tool capable of analyzing orders of magnitude more samples than existing methods while requiring only unphased genomes and employing a novel spline regularization scheme that greatly reduces estimation error.
References
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Journal ArticleDOI

A Map of Human Genome Variation From Population-Scale Sequencing

TL;DR: The 1000 Genomes Project aims to provide a deep characterization of human genome sequence variation as a foundation for investigating the relationship between genotype and phenotype as mentioned in this paper, and the results of the pilot phase of the project, designed to develop and compare different strategies for genomewide sequencing with high-throughput platforms.
Journal ArticleDOI

A Draft Sequence of the Neandertal Genome

TL;DR: The genomic data suggest that Neandertals mixed with modern human ancestors some 120,000 years ago, leaving traces of Ne andertal DNA in contemporary humans, suggesting that gene flow from Neand Bertals into the ancestors of non-Africans occurred before the divergence of Eurasian groups from each other.
Journal ArticleDOI

Evolutionary and biomedical insights from the rhesus macaque genome

Richard A. Gibbs, +177 more
- 13 Apr 2007 - 
TL;DR: The genome sequence of an Indian-origin Macaca mulatta female is determined and compared with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families.
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