B
Ben Glocker
Researcher at Imperial College London
Publications - 363
Citations - 30047
Ben Glocker is an academic researcher from Imperial College London. The author has contributed to research in topics: Computer science & Segmentation. The author has an hindex of 60, co-authored 300 publications receiving 20402 citations. Previous affiliations of Ben Glocker include Analysis Group & Microsoft.
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Journal ArticleDOI
The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS)
Bjoern H. Menze,Andras Jakab,Stefan Bauer,Jayashree Kalpathy-Cramer,Keyvan Farahani,Justin Kirby,Yuliya Burren,N Porz,Johannes Slotboom,Roland Wiest,Levente Lanczi,Elizabeth R. Gerstner,Marc-André Weber,Tal Arbel,Brian B. Avants,Nicholas Ayache,Patricia Buendia,D. Louis Collins,Nicolas Cordier,Jason J. Corso,Antonio Criminisi,Tilak Das,Hervé Delingette,Çağatay Demiralp,Christopher R. Durst,Michel Dojat,Senan Doyle,Joana Festa,Florence Forbes,Ezequiel Geremia,Ben Glocker,Polina Golland,Xiaotao Guo,Andac Hamamci,Khan M. Iftekharuddin,Raj Jena,Nigel M. John,Ender Konukoglu,Danial Lashkari,José Mariz,Raphael Meier,Sérgio Pereira,Doina Precup,Stephen J. Price,Tammy Riklin Raviv,Syed M. S. Reza,Michael Ryan,Duygu Sarikaya,Lawrence H. Schwartz,Hoo-Chang Shin,Jamie Shotton,Carlos A. Silva,Nuno Sousa,Nagesh K. Subbanna,Gábor Székely,Thomas J. Taylor,Owen M. Thomas,Nicholas J. Tustison,Gozde Unal,Flor Vasseur,Max Wintermark,Dong Hye Ye,Liang Zhao,Binsheng Zhao,Darko Zikic,Marcel Prastawa,Mauricio Reyes,Koen Van Leemput +67 more
TL;DR: The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS) as mentioned in this paper was organized in conjunction with the MICCAI 2012 and 2013 conferences, and twenty state-of-the-art tumor segmentation algorithms were applied to a set of 65 multi-contrast MR scans of low and high grade glioma patients.
Journal ArticleDOI
Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation
Konstantinos Kamnitsas,Christian Ledig,Virginia F. J. Newcombe,Joanna P. Simpson,Andrew D. Kane,David K. Menon,Daniel Rueckert,Ben Glocker +7 more
TL;DR: An efficient and effective dense training scheme which joins the processing of adjacent image patches into one pass through the network while automatically adapting to the inherent class imbalance present in the data, and improves on the state-of-the‐art for all three applications.
Posted Content
Attention U-Net: Learning Where to Look for the Pancreas
Ozan Oktay,Jo Schlemper,Loic Le Folgoc,Matthew C. H. Lee,Mattias P. Heinrich,Kazunari Misawa,Kensaku Mori,Steven McDonagh,Nils Y. Hammerla,Bernhard Kainz,Ben Glocker,Daniel Rueckert +11 more
TL;DR: A novel attention gate (AG) model for medical imaging that automatically learns to focus on target structures of varying shapes and sizes is proposed to eliminate the necessity of using explicit external tissue/organ localisation modules of cascaded convolutional neural networks (CNNs).
Journal ArticleDOI
Traumatic brain injury: integrated approaches to improve prevention, clinical care, and research
Andrew I R Maas,David K. Menon,P. David Adelson,Nada Andelic,Michael J. Bell,Antonio Belli,Peter Bragge,Alexandra Brazinova,Andras Buki,Randall M. Chesnut,Giuseppe Citerio,Mark Coburn,D. Jamie Cooper,A Tamara Crowder,Endre Czeiter,Marek Czosnyka,Ramon Diaz-Arrastia,Jens P. Dreier,Ann-Christine Duhaime,Ari Ercole,Thomas A. van Essen,Valery L. Feigin,Guoyi Gao,Joseph T. Giacino,Laura E. Gonzalez-Lara,Russell L. Gruen,Russell L. Gruen,Deepak Gupta,Jed A. Hartings,Sean Hill,Jiyao Jiang,Naomi Ketharanathan,Erwin J. O. Kompanje,Linda Lanyon,Steven Laureys,Fiona Lecky,Harvey S. Levin,Hester F. Lingsma,Marc Maegele,Marek Majdan,Geoffrey T. Manley,Jill A. Marsteller,Luciana Mascia,Charles McFadyen,Stefania Mondello,Virginia F. J. Newcombe,Aarno Palotie,Aarno Palotie,Aarno Palotie,Paul M. Parizel,Wilco C. Peul,James Piercy,Suzanne Polinder,Louis Puybasset,Todd E. Rasmussen,Rolf Rossaint,Peter Smielewski,Jeannette Söderberg,Simon J. Stanworth,Murray B. Stein,Nicole von Steinbüchel,William Stewart,Ewout W. Steyerberg,Ewout W. Steyerberg,Nino Stocchetti,Anneliese Synnot,Anneliese Synnot,Braden Te Ao,Olli Tenovuo,Alice Theadom,Dick Tibboel,Walter Videtta,Kevin K.W. Wang,W. Huw Williams,Lindsay Wilson,Kristine Yaffe,Hadie Adams,Vanni Agnoletti,Judith Allanson,Krisztina Amrein,Norberto Andaluz,Audny Anke,Anna Antoni,Arjan Bastiaan van As,Gérard Audibert,Antun Azaševac,Philippe Azouvi,Maria Luisa Azzolini,Camelia Baciu,Rafael Badenes,Karen M. Barlow,Ronald H. M. A. Bartels,Ursula Bauerfeind,Miriam H. Beauchamp,Darcy Beer,Ronny Beer,Francisco Javier Belda,Bo-Michael Bellander,Rémy Bellier,Habib Benali,Thierry Benard,Valzerda Beqiri,Luigi Beretta,Francis Bernard,Guido Bertolini,Federico Bilotta,Morten Blaabjerg,Hugo den Boogert,Kathy Boutis,Pierre Bouzat,Brian L. Brooks,Camilla Brorsson,Monika Bullinger,Emma Burns,Calappi E,Peter Cameron,Elsa Carise,Ana M. Castaño-Leon,Francesco Causin,Giorgio Chevallard,Arturo Chieregato,Brian R. Christie,Maryse C. Cnossen,Jonathan P. Coles,Johnny Collett,Francesco Della Corte,William Craig,Gábor Csató,Ákos Csomós,Nicola Curry,Claire Dahyot-Fizelier,Helen Dawes,Carol DeMatteo,Bart Depreitere,Deborah Dewey,Jeroen T. J. M. van Dijck,Đula Đilvesi,Diederik W.J. Dippel,Kemal Dizdarevic,Emma Donoghue,Or Duek,Guy-Loup Dulière,Adelaida Dzeko,George A. Eapen,Carolyn A. Emery,Shane W. English,Patrick Esser,Erzsébet Ezer,Martin Fabricius,Junfeng Feng,Dean Fergusson,Anthony Figaji,Joanne Fleming,Kelly A Foks,G. Francony,Stephen B. Freedman,Ulderico Freo,Shirin Frisvold,Isabelle Gagnon,Damien Galanaud,Dashiell Gantner,Benoit Giraud,Ben Glocker,Jagos Golubovic,Pedro A Gómez López,Wayne A. Gordon,Primoz Gradisek,Jocelyn Gravel,Donald E. G. Griesdale,Francesca Grossi,Juanita A. Haagsma,Asta Håberg,Iain K. Haitsma,Wim Van Hecke,Raimund Helbok,Eirik Helseth,Caroline M. van Heugten,Cornelia W. E. Hoedemaekers,Stefan Höfer,Lindsay Horton,Jiyuan Hui,Jilske A Huijben,Peter J. Hutchinson,Bram Jacobs,Mathieu van der Jagt,Stefan Jankowski,Koen Janssens,Bojan Jelaca,Kelly Jones,Konstantinos Kamnitsas,Rafael Kaps,Mladen Karan,Ari Katila,Kirsi-Maija Kaukonen,Véronique De Keyser,Riku Kivisaari,Angelos G. Kolias,Balint Kolumban,Ksenija Kolundžija,Daniel Kondziella,Lars-Owe D. Koskinen,Noémi Kovács,Andreas H. Kramer,Demitri Kutsogiannis,Theodoros Kyprianou,Alfonso Lagares,Francois Lamontagne,Roberto Latini,François Lauzier,Isaac Lazar,Christian Ledig,Rolf Lefering,Valerie Legrand,Leon Levi,Roger Lightfoot,Angels Lozano,Stephen MacDonald,Sebastian Major,Alex Manara,Pauline Manhes,Hugues Maréchal,Costanza Martino,Alessandro Masala,Serge Masson,Julia Mattern,Bradford J. McFadyen,Catherine McMahon,Maureen O. Meade,Béla Melegh,Tomas Menovsky,Lynne Moore,Marta M Correia,Maria Cristina Morganti-Kossmann,Holger Muehlan,Pratik Mukherjee,Lynnette Murray,Joukje van der Naalt,Ancuta Negru,David W. Nelson,Daan Nieboer,Quentin Noirhomme,József Nyirádi,Mauro Oddo,David O. Okonkwo,Annemarie W. Oldenbeuving,Fabrizio Ortolano,Martin H. Osmond,Jean-François Payen,Vincent Perlbarg,Paolo Persona,Nicolas Pichon,Anna Piippo-Karjalainen,Sebastien Pili-Floury,Matti Pirinen,Horia Ple,Maria A. Poca,Jussi P. Posti,Dominique Van Praag,Alain Ptito,Andreea Radoi,Arminas Ragauskas,Arminas Ragauskas,Rahul Raj,Ruben G. L. Real,Nick Reed,Jonathan Rhodes,Claudia S. Robertson,Saulius Rocka,Saulius Rocka,Cecilie Røe,Olav Røise,Gerwin Roks,Jonathan Rosand,Jeffrey V. Rosenfeld,Christina Rosenlund,Guy Rosenthal,Sandra Rossi,Daniel Rueckert,Godard C.W. de Ruiter,Marco Sacchi,Barbara J. Sahakian,Juan Sahuquillo,Oliver W. Sakowitz,Gerardo Salvato,Renán Sánchez-Porras,János Sándor,Grinder Sangha,Nadine Schäfer,Silke Schmidt,Kathryn J Schneider,David M. Schnyer,Herbert Schöhl,Guus G. Schoonman,Rico Frederik Schou,Özcan Sir,Toril Skandsen,Dirk Smeets,Abayomi Sorinola,Emmanuel Stamatakis,Ana Stevanovic,Robert Stevens,Nina Sundström,Fabio Silvio Taccone,Fabio Silvio Taccone,Riikka S.K. Takala,Päivi Tanskanen,Mark Taylor,Ralph Telgmann,Nancy R. Temkin,Guido Teodorani,Matthew Thomas,Christos M. Tolias,Tony Trapani,Alexis F. Turgeon,Peter Vajkoczy,Alex B. Valadka,Egils Valeinis,Shirley Vallance,Zoltan Vamos,Alessia Vargiolu,Emmanuel Vega,Jan Verheyden,Anne Vik,Rimantas Vilcinis,Carmen L.A. Vleggeert-Lankamp,Lidia Vogt,Victor Volovici,Daphne C. Voormolen,Peter Vulekovic,Thijs Vande Vyvere,Julia Van Waesberghe,Lars Wessels,Eno Wildschut,Guy B. Williams,Maren K.L. Winkler,Stefan Wolf,Gordon Wood,Nektaria Xirouchaki,Alexander Younsi,Menashe Zaaroor,Veronika Zelinkova,Roger Zemek,Fabrizio Zumbo +342 more
TL;DR: The InTBIR Participants and Investigators have provided informed consent for the study to take place in Poland.
Posted ContentDOI
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge
Spyridon Bakas,Mauricio Reyes,Andras Jakab,Stefan Bauer,Markus Rempfler,Alessandro Crimi,Russell T. Shinohara,Christoph Berger,Sung Min Ha,Martin Rozycki,Marcel Prastawa,Esther Alberts,Jana Lipkova,John Freymann,John Freymann,Justin Kirby,Justin Kirby,Michel Bilello,Hassan M. Fathallah-Shaykh,Roland Wiest,Jan S. Kirschke,Benedikt Wiestler,Rivka R. Colen,Aikaterini Kotrotsou,Pamela LaMontagne,Daniel S. Marcus,Mikhail Milchenko,Arash Nazeri,Marc-André Weber,Abhishek Mahajan,Ujjwal Baid,Elizabeth R. Gerstner,Dongjin Kwon,Gagan Acharya,Manu Agarwal,M. S. Alam,Alberto Albiol,Antonio Albiol,F. Albiol,Varghese Alex,Nigel M. Allinson,Pedro H. A. Amorim,Abhijit Amrutkar,Ganesh Anand,Simon Andermatt,Tal Arbel,Pablo Arbeláez,Aaron Avery,Muneeza Azmat,B. Pranjal,Wenjia Bai,Subhashis Banerjee,Subhashis Banerjee,Bill Barth,Thomas Batchelder,Kayhan Batmanghelich,Enzo Battistella,Enzo Battistella,Andrew Beers,Mikhail Belyaev,Martin Bendszus,Eze Benson,Jose Bernal,H. N. Bharath,George Biros,Sotirios Bisdas,James M. Brown,Mariano Cabezas,Shilei Cao,Jorge Cardoso,Eric Carver,Adrià Casamitjana,Laura Silvana Castillo,Marcel Catà,Philippe C. Cattin,Albert Cerigues,Vinicius S. Chagas,Siddhartha Chandra,Yi-Ju Chang,Shiyu Chang,Ken Chang,Joseph Chazalon,Shengcong Chen,Wei Chen,Jefferson W. Chen,Zhaolin Chen,Kun Cheng,Ahana Roy Choudhury,Roger Chylla,Albert Clèrigues,Steven Colleman,Ramiro German Rodriguez Colmeiro,Ramiro German Rodriguez Colmeiro,Marc Combalia,Anthony Costa,Xiaomeng Cui,Zhenzhen Dai,Lutao Dai,Laura Alexandra Daza,Eric Deutsch,Changxing Ding,Chao Dong,Shidu Dong,Wojciech Dudzik,Zach Eaton-Rosen,Gary F. Egan,Guilherme Escudero,Théo Estienne,Théo Estienne,Richard M. Everson,Jonathan Fabrizio,Yong Fan,Longwei Fang,Xue Feng,Enzo Ferrante,Lucas Fidon,Martin H. Fischer,Andrew P. French,Naomi Fridman,Huan Fu,David Fuentes,Yaozong Gao,Evan Gates,David T. Gering,Amir Gholami,Willi Gierke,Ben Glocker,Mingming Gong,Mingming Gong,Sandra González-Villà,Thomas Grosges,Yuanfang Guan,Sheng Guo,Sudeep Gupta,Woo-Sup Han,Il Song Han,Konstantin Harmuth,Huiguang He,Aura Hernández-Sabaté,Evelyn Herrmann,Naveen Himthani,Winston H. Hsu,Cheyu Hsu,Hu Xiaojun,Xiaobin Hu,Yan Hu,Yifan Hu,Rui Hua,Teng-Yi Huang,Weilin Huang,Sabine Van Huffel,Quan Huo,Vivek Hv,Khan M. Iftekharuddin,Fabian Isensee,Mobarakol Islam,Aaron S. Jackson,Sachin Jambawalikar,Andrew Jesson,Weijian Jian,Peter H. Jin,V Jeya Maria Jose,V Jeya Maria Jose,Alain Jungo,Bernhard Kainz,Konstantinos Kamnitsas,Po-Yu Kao,Ayush Karnawat,Thomas Kellermeier,Adel Kermi,Kurt Keutzer,Mohamed Tarek Khadir,Mahendra Khened,Philipp Kickingereder,Geena Kim,Nik King,Haley Knapp,Urspeter Knecht,Lisa Kohli,Deren Kong,Xiangmao Kong,Simon Koppers,Avinash Kori,Ganapathy Krishnamurthi,Egor Krivov,Piyush Kumar,Kaisar Kushibar,Dmitrii Lachinov,Dmitrii Lachinov,Tryphon Lambrou,Joon Lee,Chengen Lee,Yuehchou Lee,Matthew C. H. Lee,Szidónia Lefkovits,László Lefkovits,James Levitt,Tengfei Li,Hongwei Li,Wenqi Li,Wenqi Li,Hongyang Li,Xiaochuan Li,Yuexiang Li,Heng Li,Zhenye Li,Xiaoyu Li,Zeju Li,XiaoGang Li,Zheng-Shen Lin,Fengming Lin,Pietro Liò,C Liu,Boqiang Liu,Xiang Liu,Mingyuan Liu,Ju Liu,Luyan Liu,Xavier Lladó,Marc Moreno Lopez,Pablo Ribalta Lorenzo,Zhentai Lu,Lin Luo,Zhigang Luo,Jun Ma,Kai Ma,Thomas Mackie,Anant Madabushi,Issam Mahmoudi,Klaus H. Maier-Hein,Pradipta Maji,C. P. Mammen,Andreas Mang,B.S. Manjunath,M. Marcinkiewicz,Steven McDonagh,Stephen J. McKenna,Richard McKinley,Miriam Mehl,Sachin Mehta,Raghav Mehta,Raphael Meier,Christoph Meinel,Dorit Merhof,Craig H. Meyer,Robert F. Miller,Sushmita Mitra,Aliasgar Moiyadi,David Molina-García,Miguel Monteiro,Grzegorz Mrukwa,Andriy Myronenko,Jakub Nalepa,Thuyen Ngo,Dong Nie,Holly Ning,Chen Niu,Nicholas Nuechterlein,Eric K. Oermann,Arlindo L. Oliveira,Arlindo L. Oliveira,Diego D. C. Oliveira,Arnau Oliver,Alexander F. I. Osman,Yu-Nian Ou,Sebastien Ourselin,Nikos Paragios,Moo Sung Park,Brad Paschke,J. Gregory Pauloski,Kamlesh Pawar,Nick Pawlowski,Linmin Pei,Suting Peng,Silvio M. Pereira,Julián Pérez-Beteta,Víctor M. Pérez-García,Simon Pezold,Bao Pham,Ashish Phophalia,Gemma Piella,G. N. Pillai,Marie Piraud,Maxim Pisov,Anmol Popli,Michael P. Pound,Reza Pourreza,Prateek Prasanna,Vesna Prkovska,Tony P. Pridmore,Santi Puch,Elodie Puybareau,Buyue Qian,Xu Qiao,Martin Rajchl,Swapnil Rane,Michael Rebsamen,Hongliang Ren,Xuhua Ren,Karthik Revanuru,Mina Rezaei,Oliver Rippel,Luis Carlos Rivera,Charlotte Robert,Bruce R. Rosen,Daniel Rueckert,Mohammed Safwan,Mostafa Salem,Joaquim Salvi,Irina Sánchez,Heitor M. Santos,Emmett Sartor,Dawid Schellingerhout,Klaudius Scheufele,Matthew R. Scott,Artur A. Scussel,Sara Sedlar,Juan Pablo Serrano-Rubio,N. Jon Shah,Nameetha Shah,Mazhar Shaikh,B. Uma Shankar,Zeina A. Shboul,Haipeng Shen,Dinggang Shen,Linlin Shen,Haocheng Shen,Varun Shenoy,Feng Shi,Hyung Eun Shin,Hai Shu,Diana M. Sima,Matthew Sinclair,Örjan Smedby,James Snyder,Mohammadreza Soltaninejad,Guidong Song,Mehul Soni,Jean Stawiaski,Shashank Subramanian,Li Sun,Roger Sun,Roger Sun,Jiawei Sun,Kay Sun,Yu Sun,Guoxia Sun,Shuang Sun,Yannick Suter,László Szilágyi,Sanjay N. Talbar,Dacheng Tao,Zhongzhao Teng,Siddhesh Thakur,Meenakshi Thakur,Sameer Tharakan,Pallavi Tiwari,Guillaume Tochon,Tuan Tran,Yuhsiang M. Tsai,Kuan-Lun Tseng,Tran Anh Tuan,Vadim Turlapov,Nicholas J. Tustison,Maria Vakalopoulou,Sergi Valverde,Rami Vanguri,Evgeny Vasiliev,Jonathan Ventura,Luis Vera,Tom Vercauteren,Tom Vercauteren,C. A. Verrastro,Lasitha Vidyaratne,Verónica Vilaplana,Ajeet Vivekanandan,Guotai Wang,Guotai Wang,Qian Wang,Chiatse J. Wang,Weichung Wang,Duo Wang,Ruixuan Wang,Yuanyuan Wang,Chunliang Wang,Ning Wen,Xin Wen,Leon Weninger,Wolfgang Wick,Shaocheng Wu,Qiang Wu,Yihong Wu,Yong Xia,Yanwu Xu,Xiaowen Xu,Peiyuan Xu,Tsai-Ling Yang,Xiaoping Yang,Hao-Yu Yang,Junlin Yang,Haojin Yang,Guang Yang,Hongdou Yao,Xujiong Ye,Changchang Yin,Brett Young-Moxon,Jinhua Yu,Xiangyu Yue,Songtao Zhang,Angela Zhang,Kun Zhang,Xuejie Zhang,Lichi Zhang,Xiaoyue Zhang,Yazhuo Zhang,Lei Zhang,Jianguo Zhang,Xiang Zhang,Tianhao Zhang,Sicheng Zhao,Yu Zhao,Xiaomei Zhao,Liang Zhao,Liang Zhao,Yefeng Zheng,Liming Zhong,Chenhong Zhou,Xiaobing Zhou,Fan Zhou,Hongtu Zhu,Jin Zhu,Ying Zhuge,Weiwei Zong,Jayashree Kalpathy-Cramer,Keyvan Farahani,Christos Davatzikos,Koen Van Leemput,Koen Van Leemput,Bjoern H. Menze +438 more
TL;DR: This study assesses the state-of-the-art machine learning methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018, and investigates the challenge of identifying the best ML algorithms for each of these tasks.