Showing papers by "United States Department of Energy published in 2020"
TL;DR: The flagship paper of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium describes the generation of the integrative analyses of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types, the structures for international data sharing and standardized analyses, and the main scientific findings from across the consortium studies.
Abstract: Cancer is driven by genetic change, and the advent of massively parallel sequencing has enabled systematic documentation of this variation at the whole-genome scale1,2,3. Here we report the integrative analysis of 2,658 whole-cancer genomes and their matching normal tissues across 38 tumour types from the Pan-Cancer Analysis of Whole Genomes (PCAWG) Consortium of the International Cancer Genome Consortium (ICGC) and The Cancer Genome Atlas (TCGA). We describe the generation of the PCAWG resource, facilitated by international data sharing using compute clouds. On average, cancer genomes contained 4–5 driver mutations when combining coding and non-coding genomic elements; however, in around 5% of cases no drivers were identified, suggesting that cancer driver discovery is not yet complete. Chromothripsis, in which many clustered structural variants arise in a single catastrophic event, is frequently an early event in tumour evolution; in acral melanoma, for example, these events precede most somatic point mutations and affect several cancer-associated genes simultaneously. Cancers with abnormal telomere maintenance often originate from tissues with low replicative activity and show several mechanisms of preventing telomere attrition to critical levels. Common and rare germline variants affect patterns of somatic mutation, including point mutations, structural variants and somatic retrotransposition. A collection of papers from the PCAWG Consortium describes non-coding mutations that drive cancer beyond those in the TERT promoter4; identifies new signatures of mutational processes that cause base substitutions, small insertions and deletions and structural variation5,6; analyses timings and patterns of tumour evolution7; describes the diverse transcriptional consequences of somatic mutation on splicing, expression levels, fusion genes and promoter activity8,9; and evaluates a range of more-specialized features of cancer genomes8,10,11,12,13,14,15,16,17,18.
1,600 citations
United States Department of Energy1, Vanderbilt University2, Harvard University3, Wake Forest University4, Hennepin County Medical Center5, Tufts University6, Yeshiva University7, Ohio State University8, University of Washington9, Stanford University10, Oregon Health & Science University11, University of California, Los Angeles12, Primary Children's Hospital13, Johns Hopkins University14, University of Colorado Denver15
TL;DR: It is indicated that COVID-19 can result in prolonged illness even among persons with milder outpatient illness, including young adults, and effective public health messaging targeting these groups is warranted.
Abstract: Prolonged symptom duration and disability are common in adults hospitalized with severe coronavirus disease 2019 (COVID-19). Characterizing return to baseline health among outpatients with milder COVID-19 illness is important for understanding the full spectrum of COVID-19-associated illness and tailoring public health messaging, interventions, and policy. During April 15-June 25, 2020, telephone interviews were conducted with a random sample of adults aged ≥18 years who had a first positive reverse transcription-polymerase chain reaction (RT-PCR) test for SARS-CoV-2, the virus that causes COVID-19, at an outpatient visit at one of 14 U.S. academic health care systems in 13 states. Interviews were conducted 14-21 days after the test date. Respondents were asked about demographic characteristics, baseline chronic medical conditions, symptoms present at the time of testing, whether those symptoms had resolved by the interview date, and whether they had returned to their usual state of health at the time of interview. Among 292 respondents, 94% (274) reported experiencing one or more symptoms at the time of testing; 35% of these symptomatic respondents reported not having returned to their usual state of health by the date of the interview (median = 16 days from testing date), including 26% among those aged 18-34 years, 32% among those aged 35-49 years, and 47% among those aged ≥50 years. Among respondents reporting cough, fatigue, or shortness of breath at the time of testing, 43%, 35%, and 29%, respectively, continued to experience these symptoms at the time of the interview. These findings indicate that COVID-19 can result in prolonged illness even among persons with milder outpatient illness, including young adults. Effective public health messaging targeting these groups is warranted. Preventative measures, including social distancing, frequent handwashing, and the consistent and correct use of face coverings in public, should be strongly encouraged to slow the spread of SARS-CoV-2.
945 citations
TL;DR: It is found that the virus replicates to high titer in Vero-CCL81 cells and Vero E6 cells in the absence of trypsin, and it is hoped that open access to this reagent will expedite development of medical countermeasures.
Abstract: The etiologic agent of an outbreak of pneumonia in Wuhan, China, was identified as severe acute respiratory syndrome coronavirus 2 in January 2020. A patient in the United States was given a diagnosis of infection with this virus by the state of Washington and the US Centers for Disease Control and Prevention on January 20, 2020. We isolated virus from nasopharyngeal and oropharyngeal specimens from this patient and characterized the viral sequence, replication properties, and cell culture tropism. We found that the virus replicates to high titer in Vero-CCL81 cells and Vero E6 cells in the absence of trypsin. We also deposited the virus into 2 virus repositories, making it broadly available to the public health and research communities. We hope that open access to this reagent will expedite development of medical countermeasures.
499 citations
Centers for Disease Control and Prevention1, University of Miami2, New York City Department of Health and Mental Hygiene3, Broad Institute4, Harvard University5, University of Southern Maine6, United States Department of Health and Human Services7, Maine Medical Center8, Veterans Health Administration9, Louisiana State University10, Emory University11, United States Department of Energy12
TL;DR: Clinicians and health departments should consider MIS-A in adults with compatible signs and symptoms, and interventions that prevent COVID-19 might prevent MIS-B, as well as the role for antibody testing in identifying similar cases among adults.
Abstract: During the course of the coronavirus disease 2019 (COVID-19) pandemic, reports of a new multisystem inflammatory syndrome in children (MIS-C) have been increasing in Europe and the United States (1-3). Clinical features in children have varied but predominantly include shock, cardiac dysfunction, abdominal pain, and elevated inflammatory markers, including C-reactive protein (CRP), ferritin, D-dimer, and interleukin-6 (1). Since June 2020, several case reports have described a similar syndrome in adults; this review describes in detail nine patients reported to CDC, seven from published case reports, and summarizes the findings in 11 patients described in three case series in peer-reviewed journals (4-6). These 27 patients had cardiovascular, gastrointestinal, dermatologic, and neurologic symptoms without severe respiratory illness and concurrently received positive test results for SARS-CoV-2, the virus that causes COVID-19, by polymerase chain reaction (PCR) or antibody assays indicating recent infection. Reports of these patients highlight the recognition of an illness referred to here as multisystem inflammatory syndrome in adults (MIS-A), the heterogeneity of clinical signs and symptoms, and the role for antibody testing in identifying similar cases among adults. Clinicians and health departments should consider MIS-A in adults with compatible signs and symptoms. These patients might not have positive SARS-CoV-2 PCR or antigen test results, and antibody testing might be needed to confirm previous SARS-CoV-2 infection. Because of the temporal association between MIS-A and SARS-CoV-2 infections, interventions that prevent COVID-19 might prevent MIS-A. Further research is needed to understand the pathogenesis and long-term effects of this newly described condition.
405 citations
TL;DR: Medical record-abstracted data for hospitalized adult patients with laboratory-confirmed COVID-19 who were admitted during March 2020 revealed an overrepresentation of black patients within this hospitalized cohort, which is important for public health officials to ensure that prevention activities prioritize communities and racial/ethnic groups most affected by CO VID-19.
Abstract: SARS-CoV-2, the novel coronavirus that causes coronavirus disease 2019 (COVID-19), was first detected in the United States during January 2020 (1). Since then, >980,000 cases have been reported in the United States, including >55,000 associated deaths as of April 28, 2020 (2). Detailed data on demographic characteristics, underlying medical conditions, and clinical outcomes for persons hospitalized with COVID-19 are needed to inform prevention strategies and community-specific intervention messages. For this report, CDC, the Georgia Department of Public Health, and eight Georgia hospitals (seven in metropolitan Atlanta and one in southern Georgia) summarized medical record-abstracted data for hospitalized adult patients with laboratory-confirmed* COVID-19 who were admitted during March 2020. Among 305 hospitalized patients with COVID-19, 61.6% were aged <65 years, 50.5% were female, and 83.2% with known race/ethnicity were non-Hispanic black (black). Over a quarter of patients (26.2%) did not have conditions thought to put them at higher risk for severe disease, including being aged ≥65 years. The proportion of hospitalized patients who were black was higher than expected based on overall hospital admissions. In an adjusted time-to-event analysis, black patients were not more likely than were nonblack patients to receive invasive mechanical ventilation† (IMV) or to die during hospitalization (hazard ratio [HR] = 0.63; 95% confidence interval [CI] = 0.35-1.13). Given the overrepresentation of black patients within this hospitalized cohort, it is important for public health officials to ensure that prevention activities prioritize communities and racial/ethnic groups most affected by COVID-19. Clinicians and public officials should be aware that all adults, regardless of underlying conditions or age, are at risk for serious illness from COVID-19.
383 citations
American Museum of Natural History1, University of Tartu2, University of Gothenburg3, Swedish University of Agricultural Sciences4, University of Oslo5, University of Hawaii at Manoa6, University of Copenhagen7, Purdue University8, Academy of Sciences of the Czech Republic9, University of Turin10, Harvard University11, Synlab Group12, Universidad Santo Tomás13, Universidad Mayor14, University of Electronic Science and Technology of China15, University of Warsaw16, Swedish Museum of Natural History17, Mae Fah Luang University18, University of Florida19, Laos Ministry of Agriculture and Forestry20, São Paulo Federal Institute of Education, Science and Technology21, Estonian University of Life Sciences22, Federal University of Pernambuco23, United States Department of Energy24, Del Rosario University25, National Autonomous University of Mexico26, Ghent University27, West Bengal State University28, Beijing Forestry University29, Pontifical Catholic University of Chile30, Chinese Academy of Sciences31, Field Museum of Natural History32, University of Potsdam33, Leibniz Association34, University of Gilan35, University of Alaska Fairbanks36, University of Tokyo37, University of Costa Rica38, Forest Research Institute39, University of Sydney40, Westmead Hospital41, Uppsala University42, Landcare Research43, University of Chittagong44, University of Memphis45, United Arab Emirates University46, Ministry of Land and Resources of the People's Republic of China47, University of Pretoria48, Royal Botanic Gardens49, Ocean University of China50, Guizhou University51, Mie University52, Hokkaido University53
TL;DR: Fungal traits and character database FungalTraits operating at genus and species hypothesis levels is presented in this article, which includes 17 lifestyle related traits of fungal and Stramenopila genera.
Abstract: The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and Fun(Fun) together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.
245 citations
Ludwig Institute for Cancer Research1, University of California, San Diego2, Imperial College London3, Lawrence Berkeley National Laboratory4, Pennsylvania State University5, Stanford University6, Salk Institute for Biological Studies7, California Institute of Technology8, University of California, San Francisco9, University of California, Merced10, United States Department of Energy11, University of California, Berkeley12
TL;DR: Analysis of chromatin state and accessibility in mouse tissues from twelve sites and eight developmental stages provides the most comprehensive view of Chromatin dynamics to date.
Abstract: The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes, methylomes and chromatin states. Here we systematically examined the state and accessibility of chromatin in the developing mouse fetus. In total we performed 1,128 chromatin immunoprecipitation with sequencing (ChIP-seq) assays for histone modifications and 132 assay for transposase-accessible chromatin using sequencing (ATAC-seq) assays for chromatin accessibility across 72 distinct tissue-stages. We used integrative analysis to develop a unified set of chromatin state annotations, infer the identities of dynamic enhancers and key transcriptional regulators, and characterize the relationship between chromatin state and accessibility during developmental gene regulation. We also leveraged these data to link enhancers to putative target genes and demonstrate tissue-specific enrichments of sequence variants associated with disease in humans. The mouse ENCODE data sets provide a compendium of resources for biomedical researchers and achieve, to our knowledge, the most comprehensive view of chromatin dynamics during mammalian fetal development to date.
219 citations
TL;DR: Sequencing and genomic diversification of five allopolyploid cotton species provide insights into polyploid genome evolution and epigenetic landscapes for cotton improvement, and will empower efforts to manipulate genetic recombination and modify epigenetics landscapes and target genes for crop improvement.
Abstract: Polyploidy is an evolutionary innovation for many animals and all flowering plants, but its impact on selection and domestication remains elusive. Here we analyze genome evolution and diversification for all five allopolyploid cotton species, including economically important Upland and Pima cottons. Although these polyploid genomes are conserved in gene content and synteny, they have diversified by subgenomic transposon exchanges that equilibrate genome size, evolutionary rate heterogeneities and positive selection between homoeologs within and among lineages. These differential evolutionary trajectories are accompanied by gene-family diversification and homoeolog expression divergence among polyploid lineages. Selection and domestication drive parallel gene expression similarities in fibers of two cultivated cottons, involving coexpression networks and N6-methyladenosine RNA modifications. Furthermore, polyploidy induces recombination suppression, which correlates with altered epigenetic landscapes and can be overcome by wild introgression. These genomic insights will empower efforts to manipulate genetic recombination and modify epigenetic landscapes and target genes for crop improvement.
195 citations
TL;DR: This work evaluates the benefits of the blockchain (or distributed ledger) technology and advocates a decentralised model of confidence for transactions based on an academic crypto currency to eliminate once and for all the “gap” between the academic world and the working world.
Abstract: Currently, the training of the future work force presents challenging problems to higher education. This training, in the form of practical and theoretical knowledge can come from multiple platforms, channels and means, both formal and informal. In addition, it is quite difficult to assess the knowledge skill level that a student has acquired to optimize their chances for future employability. This, together with the need to still manage academic curricula on paper, the problems of confidence when validating these documents and contrasting them with real knowledge, etc., means that management in higher education requires revolutionary new tools. This work evaluates the benefits of the blockchain (or distributed ledger) technology and advocates a decentralised model of confidence for transactions based on an academic crypto currency. In this approach blockchain is used to manage transactions of content, teaching and competencies, assessed by consensus by students, trainers and employers, to eliminate once and for all the “gap” between the academic world and the working world. This paper aims to address the current challenges of an increasingly dispersed, open and ubiquitous higher education. The proposed model can be implemented in any training institution to adapt its teaching to the specific needs of professional profiles validated by employers in the sector. This model has been validated by means of a prototype with more than acceptable results.
158 citations
TL;DR: In this paper, the development of an economically viable enhanced oil recovery (EOR) techni cation is discussed, which is typically less than 10% of the primary primary oil recovery from fractured unconventional formations, such as shale or tight sands.
Abstract: Primary oil recovery from fractured unconventional formations, such as shale or tight sands, is typically less than 10%. The development of an economically viable enhanced oil recovery (EOR) techni...
139 citations
University of Oklahoma1, University of Massachusetts Amherst2, CERN3, University of Göttingen4, Royal Holloway, University of London5, University of Toronto6, University of Copenhagen7, University of Sussex8, Tel Aviv University9, University of Oslo10, Federal University of Rio de Janeiro11, McGill University12, Technion – Israel Institute of Technology13, United States Department of Energy14, International Centre for Theoretical Physics15, University of Tokyo16, University of Mainz17, University of Victoria18, AGH University of Science and Technology19, Northern Illinois University20, Ludwig Maximilian University of Munich21, Boğaziçi University22, University of Geneva23, Rutherford Appleton Laboratory24, University of California, Santa Cruz25
TL;DR: The ATLAS detector at the Large Hadron Collider reads out particle collision data from over 100 million electronic channels at a rate of approximately 100 kHz, with a recording rate for physics events of approximately 1 kHz.
Abstract: The ATLAS detector at the Large Hadron Collider reads out particle collision data from over 100 million electronic channels at a rate of approximately 100 kHz, with a recording rate for physics events of approximately 1 kHz. Before being certified for physics analysis at computer centres worldwide, the data must be scrutinised to ensure they are clean from any hardware or software related issues that may compromise their integrity. Prompt identification of these issues permits fast action to investigate, correct and potentially prevent future such problems that could render the data unusable. This is achieved through the monitoring of detector-level quantities and reconstructed collision event characteristics at key stages of the data processing chain. This paper presents the monitoring and assessment procedures in place at ATLAS during 2015–2018 data-taking. Through the continuous improvement of operational procedures, ATLAS achieved a high data quality efficiency, with 95.6% of the recorded proton-proton collision data collected at √s=13 TeV certified for physics analysis.
TL;DR: In this paper, a well-to-wheels (WTW) energy use and emissions analysis was conducted to compare a HFCEV (Toyota Mirai) with a gasoline conventional internal combustion engine vehicles (Mazda 3).
TL;DR: Tellurium thin films thermally evaporated at cryogenic temperatures enable the fabrication of high-performance wafer-scale p-type field-effect transistors and three-dimensional circuits.
Abstract: There is an emerging need for semiconductors that can be processed at near ambient temperature with high mobility and device performance. Although multiple n-type options have been identified, the development of their p-type counterparts remains limited. Here, we report the realization of tellurium thin films through thermal evaporation at cryogenic temperatures for fabrication of high-performance wafer-scale p-type field-effect transistors. We achieve an effective hole mobility of ~35 cm2 V-1 s-1, on/off current ratio of ~104 and subthreshold swing of 108 mV dec-1 on an 8-nm-thick film. High-performance tellurium p-type field-effect transistors are fabricated on a wide range of substrates including glass and plastic, further demonstrating the broad applicability of this material. Significantly, three-dimensional circuits are demonstrated by integrating multi-layered transistors on a single chip using sequential lithography, deposition and lift-off processes. Finally, various functional logic gates and circuits are demonstrated.
TL;DR: It is demonstrated that the integration of Rh species and NiFe-LDH can dramatically improve its HER kinetics without sacrificing the OER performance.
Abstract: NiFe-layered double hydroxide (LDH) is thought of as a promising bifunctional water-splitting catalyst, owing to its excellent performances for alkaline oxygen evolution reactions (OERs). However, it shows extremely poor activity toward hydrogen evolution reactions (HERs) due to the weak hydrogen adsorption. We demonstrated that the integration of Rh species and NiFe-LDH can dramatically improve its HER kinetics without sacrificing the OER performance. The Rh species were initially integrated into NiFe-LDH as oxidized dopants and metallic clusters (< 1 nm). In 1 M KOH electrolyte, an overpotential of 58 mV is needed to catalyze 10 mA cm-2 HER current density. Furthermore, this catalyst only requires 1.46 V to drive an electrolyzer at 10 mA cm-2. A strong interaction between metallic Rh clusters and NiFe hydroxide during the HER process is revealed. The theoretical calculation shows the Rh ions replace Fe ions as the major active sites that are responsible for OERs.
TL;DR: It is suggested that one cell, infected versus uninfected, can have immensely different metabolisms that affect the ecosystem differently, and related phage–host genome complementarity, virocell metabolic reprogramming, and viral fitness in a conceptual model to guide incorporating viruses into ecosystem models are related.
Abstract: Ocean viruses are abundant and infect 20-40% of surface microbes. Infected cells, termed virocells, are thus a predominant microbial state. Yet, virocells and their ecosystem impacts are understudied, thus precluding their incorporation into ecosystem models. Here we investigated how unrelated bacterial viruses (phages) reprogram one host into contrasting virocells with different potential ecosystem footprints. We independently infected the marine Pseudoalteromonas bacterium with siphovirus PSA-HS2 and podovirus PSA-HP1. Time-resolved multi-omics unveiled drastically different metabolic reprogramming and resource requirements by each virocell, which were related to phage-host genomic complementarity and viral fitness. Namely, HS2 was more complementary to the host in nucleotides and amino acids, and fitter during infection than HP1. Functionally, HS2 virocells hardly differed from uninfected cells, with minimal host metabolism impacts. HS2 virocells repressed energy-consuming metabolisms, including motility and translation. Contrastingly, HP1 virocells substantially differed from uninfected cells. They repressed host transcription, responded to infection continuously, and drastically reprogrammed resource acquisition, central carbon and energy metabolisms. Ecologically, this work suggests that one cell, infected versus uninfected, can have immensely different metabolisms that affect the ecosystem differently. Finally, we relate phage-host genome complementarity, virocell metabolic reprogramming, and viral fitness in a conceptual model to guide incorporating viruses into ecosystem models.
TL;DR: The use of a cloth face covering was associated with theory-derived constructs that indicate a favorable attitude toward them, intention to use them, ability to usethem, social support for using them, and beliefs that they offered protection for self, others, and the community.
Abstract: On April 3, 2020, the White House Coronavirus Task Force and CDC announced a new behavioral recommendation to help slow the spread of coronavirus disease 2019 (COVID-19) by encouraging the use of a cloth face covering when out in public (1). Widespread use of cloth face coverings has not been studied among the U.S. population, and therefore, little is known about encouraging the public to adopt this behavior. Immediately following the recommendation, an Internet survey sampled 503 adults during April 7-9 to assess their use of cloth face coverings and the behavioral and sociodemographic factors that might influence adherence to this recommendation. The same survey was administered 1 month later, during May 11-13, to another sample of 502 adults to assess changes in the prevalence estimates of use of cloth face coverings from April to May. Within days of the release of the first national recommendation for use of cloth face coverings, a majority of persons who reported leaving their home in the previous week reported using a cloth face covering (61.9%). Prevalence of use increased to 76.4% 1 month later, primarily associated with increases in use among non-Hispanic white persons (54.3% to 75.1%), persons aged ≥65 years (36.6% to 79.2%), and persons residing in the Midwest (43.7% to 73.8%). High rates were observed in April and by May, increased further among non-Hispanic black persons (74.4% to 82.3%), Hispanic or Latino persons (77.3% to 76.2%), non-Hispanic persons of other race (70.8% to 77.3%), persons aged 18-29 years (70.1% to 74.9%) and 30-39 years (73.9% to 84.4%), and persons residing in the Northeast (76.9% to 87.0%). The use of a cloth face covering was associated with theory-derived constructs that indicate a favorable attitude toward them, intention to use them, ability to use them, social support for using them, and beliefs that they offered protection for self, others, and the community. Research is needed to understand possible barriers to using cloth face coverings and ways to promote their consistent and correct use among those who have yet to adopt this behavior.
TL;DR: In this article, the electrosynthesis of ammonia (ESA) technology offers a promising approach to produce NH3 via a cathodic nitrogen reduction reaction (NRR), however, current ESA technologies desperately suffer from insufficient production rates.
TL;DR: Analysis of the genomes of 23 Flavi species shows high genetic diversity and potential for synthesis of over 13,700 CAZymes and 1600 secondary metabolites and identification of secondary metabolites, highlights the genetic and metabolic diversity within section Flavi.
Abstract: Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae, used in food fermentation and enzyme production, and Aspergillus flavus, food spoiler and mycotoxin producer. Here, we sequence 19 genomes spanning section Flavi and compare 31 fungal genomes including 23 Flavi species. We reassess their phylogenetic relationships and show that the closest relative of A. oryzae is not A. flavus, but A. minisclerotigenes or A. aflatoxiformans and identify high genome diversity, especially in sub-telomeric regions. We predict abundant CAZymes (598 per species) and prolific secondary metabolite gene clusters (73 per species) in section Flavi. However, the observed phenotypes (growth characteristics, polysaccharide degradation) do not necessarily correlate with inferences made from the predicted CAZyme content. Our work, including genomic analyses, phenotypic assays, and identification of secondary metabolites, highlights the genetic and metabolic diversity within section Flavi.
07 May 2020
TL;DR: In this article, a new thermodynamics-based rule was developed to predict solid-solution alloys, which employed only elemental properties, and applicability in screening for solid solution high-entropy alloys is straightforward and efficient.
Abstract: The empirical rules for the prediction of solid solution formation proposed so far in the literature usually have very compromised predictability. Some rules with seemingly good predictability were, however, tested using small data sets. Based on an unprecedented large dataset containing 1252 multicomponent alloys, machine-learning methods showed that the formation of solid solutions can be very accurately predicted (93%). The machine-learning results help identify the most important features, such as molar volume, bulk modulus, and melting temperature. As such a new thermodynamics-based rule was developed to predict solid–solution alloys. The new rule is nonetheless slightly less accurate (73%) but has roots in the physical nature of the problem. The new rule is employed to predict solid solutions existing in the three blocks, each of which consists of 9 elements. The predictions encompass face-centered cubic (FCC), body-centered cubic (BCC), and hexagonal closest packed (HCP) structures in a high throughput manner. The validity of the prediction is further confirmed by CALculations of PHAse Diagram (CALPHAD) calculations with high consistency (94%). Since the new thermodynamics-based rule employs only elemental properties, applicability in screening for solid solution high-entropy alloys is straightforward and efficient.
TL;DR: In this article, a review on the geometrical configurations of phase change materials (PCM) containers and their design considerations aims to improve the performance of thermal energy storage (TES) systems.
Abstract: The potential for phase change materials (PCMs) has a vital role in thermal energy storage (TES) applications and energy management strategies. Nevertheless, these materials suffer from their low thermal conductivity and hence heat transfer enhancement techniques should be applied to enhance their thermophysical properties. This review focuses on the geometrical configurations of PCM containers and their design considerations, aims to improve the performance of TES systems. Various methods for enhancing heat transfer of PCMs (the main challenge in container design) include microencapsulated PCMs, insertion of fins, the combination of fins and nanoparticles, the use of metal foams and graphite, and the doping of high photothermal materials are also extensively discussed as well. Moreover, this paper highlights various designs of PCM-finned storage systems and discusses deeply their key parameters to find out the suitable design for optimum melting and solidification rate of PCM. The reviewed results showed that the rectangular PCM container is the effective container for the bulk storage due to its high melting rate and storage efficiency. Moreover, the use of longitudinal finned geometry within PCM integrated triplex tube heat storage units significantly achieved better heat transfer performance compared to the other finned geometries. Additionally, the improvement of the heat transfer of PCM by the deployment of fins is more effective than the hybrid combination of fins and nanoparticles. Further optimization and experimental studies are recommended to explore new hybrid compound intensification techniques such as the triple combination of fins, expanded graphite, and heat pipes with multiple PCMs that augment the thermal performance of TES systems.
TL;DR: The enzyme active site cavity reveals a high degree of malleability, allowing aldehyde leupeptin and hepatitis C clinical protease inhibitors to bind and inhibit SARS-CoV-2 3CL Mpro.
TL;DR: In this article, a combination of solid oxide fuel cell (SOFC) with compressed air energy storage (CAES) and turbocharger is presented for simultaneous production of domestic hot water and power in the scale of retail buildings for peak shaving applications.
TL;DR: A water-incorporation strategy to expand the interlayer gap of α-MoO 3 is demonstrated, in which water molecules take the place of lattice oxygen ofα- MoO 3, which allows for the assembling of dual-ion energy storage devices.
Abstract: Employing high-rate ion-intercalation electrodes represents a feasible way to mitigate the inherent trade-off between energy density and power density for electrochemical energy storage devices, but efficient approaches to boost the charge-storage kinetics of electrodes are still needed. Here, we demonstrate a water-incorporation strategy to expand the interlayer gap of α-MoO3, in which water molecules take the place of lattice oxygen of α-MoO3. Accordingly, the modified α-MoO3 electrode exhibits theoretical-value-close specific capacity (963 C g−1 at 0.1 mV s−1), greatly improved rate capability (from 4.4% to 40.2% at 100 mV s−1) and boosted cycling stability (from 21 to 71% over 600 cycles). A fast-kinetics dual-ion-intercalation energy storage device is further assembled by combining the modified α-MoO3 anode with an anion-intercalation graphite cathode, operating well over a wide discharge rate range. Our study sheds light on a promising design strategy of layered materials for high-kinetics charge storage. The power/energy trade-off is a common feature seen in a Ragone plot for an electrochemical storage device. Here the authors approach this issue by showing water-incorporated α-MoO3 anodes with expanded interlayer gaps, which allow for the assembling of dual-ion energy storage devices.
TL;DR: In this paper, the authors analyse the lessons learned from the Covid19 (Coronavirus) pandemic that could possibly apply to the energy sector, with a special focus to decarbonizing transport.
TL;DR: The room-temperature neutron structure of 3CL Mpro was presented, which allowed direct determination of hydrogen atom positions and, hence, protonation states in the protease, and observed that the catalytic site natively adopts a zwitterionic reactive form.
TL;DR: In this article, a synergistic design strategy is proposed to enhance the piezoelectricity in lead-free piezoceramics by flattening the Gibbs free energy density profile, via the coexistence of multiple phases and local structural heterogeneity.
TL;DR: A high-throughput mouse reporter assay is introduced for assessing the pathogenic potential of human enhancer variants in vivo and nearly a thousand variants in an enhancer repeatedly linked to polydactyly are examined, revealing the functional consequences of hundreds of mutations in a phenotype-associated enhancer.
TL;DR: This study characterizes the molecular profile of silencers and their associated chromatin architectures, and suggests the possibility of targeted reactivation of epigenetically silenced genes.
Abstract: Lineage-specific gene expression is modulated by a balance between transcriptional activation and repression during animal development. Knowledge about enhancer-centered transcriptional activation has advanced considerably, but silencers and their roles in normal development remain poorly understood. Here, we performed chromatin interaction analyses of Polycomb repressive complex 2 (PRC2), a key inducer of transcriptional gene silencing, to uncover silencers, their molecular identity and associated chromatin connectivity. Systematic analysis of cis-regulatory silencer elements reveals their chromatin features and gene-targeting specificity. Deletion of certain PRC2-bound silencers in mice results in transcriptional derepression of their interacting genes and pleiotropic developmental phenotypes, including embryonic lethality. While some PRC2-bound elements function as silencers in pluripotent cells, they can transition into active tissue-specific enhancers during development, highlighting their regulatory versatility. Our study characterizes the molecular profile of silencers and their associated chromatin architectures, and suggests the possibility of targeted reactivation of epigenetically silenced genes. Chromatin interaction analysis identifies PRC2-bound silencers in mESCs, which, when deleted in mice, can lead to developmental phenotypes. Silencers in pluripotent cells can transition into active tissue-specific enhancers during development.
TL;DR: This paper presents a broad set of market and technology characteristics that typically influence an LCA of emerging technologies and identifies questions that researchers must address to account for the most important aspects of the systems they are studying and guides researchers, analysts and technology developer to better recognize key study design elements and to manage expectations of study outcomes.
Abstract: Author(s): Bergerson, Joule A; Brandt, Adam; Cresko, Joe; Carbajales‐Dale, Michael; MacLean, Heather L; Matthews, H Scott; McCoy, Sean; McManus, Marcelle; Miller, Shelie A; Morrow, William R; Posen, I Daniel; Seager, Thomas; Skone, Timothy; Sleep, Sylvia
TL;DR: It is demonstrated that an enriched natural system, fueled only with acetate, could support a bacteria-dominated microbiota employing a multi-trophic methanogenic process, and proposed that specific microbes of the community were forming symbiotic relationships, thus reducing the biosynthetic burden of individual members.
Abstract: Methanogenesis, a biological process mediated by complex microbial communities, has attracted great attention due to its contribution to global warming and potential in biotechnological applications. The current study unveiled the core microbial methanogenic metabolisms in anaerobic vessel ecosystems by applying combined genome-centric metagenomics and metatranscriptomics. Here, we demonstrate that an enriched natural system, fueled only with acetate, could support a bacteria-dominated microbiota employing a multi-trophic methanogenic process. Moreover, significant changes, in terms of microbial structure and function, were recorded after the system was supplemented with additional H2. Methanosarcina thermophila, the predominant methanogen prior to H2 addition, simultaneously performed acetoclastic, hydrogenotrophic, and methylotrophic methanogenesis. The methanogenic pattern changed after the addition of H2, which immediately stimulated Methanomicrobia-activity and was followed by a slow enrichment of Methanobacteria members. Interestingly, the essential genes involved in the Wood-Ljungdahl pathway were not expressed in bacterial members. The high expression of a glycine cleavage system indicated the activation of alternative metabolic pathways for acetate metabolism, which were reconstructed in the most abundant bacterial genomes. Moreover, as evidenced by predicted auxotrophies, we propose that specific microbes of the community were forming symbiotic relationships, thus reducing the biosynthetic burden of individual members. These results provide new information that will facilitate future microbial ecology studies of interspecies competition and symbiosis in methanogenic niches. Video abstract.