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Open AccessJournal ArticleDOI

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.

TLDR
It is shown that D614G was more infectious than the ancestral form on human lung cells, colon cells, and on cells rendered permissive by ectopic expression of human ACE2 or of ACE2 orthologs from various mammals, including Chinese rufous horseshoe bat and Malayan pangolin.
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This article is published in Cell.The article was published on 2020-10-29 and is currently open access. It has received 840 citations till now. The article focuses on the topics: Virion membrane & Protein structure.

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Persistence of infectious SARS-CoV-2 particles for up to 37 days in patients with mild COVID-19.

TL;DR: In this paper, the authors describe three patients who independently acquired their infection and were able to completely recover symptomatically within 10 days, but remained PCR-positive in deep pharyngeal samples for at least 38 days.
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Genomic Characterization of SARS-CoV-2 Isolated from Patients with Distinct Disease Outcomes in Mexico

TL;DR: A trait-association phylogenomic approach was used to explore genotype–phenotype associations, represented by the co-occurrence of mutations, disease severity outcome categories, and clusters of Mexican sequences, which revealed a higher genomic diversity compared to the initial viruses detected during the early stage of the local epidemic.
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High Concentration and Frequent Application of Disinfection Increase the Detection of Methicillin-Resistant Staphylococcus aureus Infections in Psychiatric Hospitals During the COVID-19 Pandemic.

TL;DR: In this paper, the authors investigated the mechanisms underlying a sharp increase in the detection of methicillin-resistant Staphylococcus aureus (MRSA) observed in a closed-management unit of elderly patients with mental disorders in 2020 as compared with the previous 4 years.
Posted ContentDOI

Natural variants in SARS-CoV-2 S protein pinpoint structural and functional hotspots; implications for prophylaxis strategies

TL;DR: The SARS-CoV-2 viral genome mutates incessantly as it spreads in the world and the gene for the Spike (S) protein, critical for viral transmission into humans, is no exception as mentioned in this paper.
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Modelling the association between COVID-19 transmissibility and D614G substitution in SARS-CoV-2 spike protein: using the surveillance data in California as an example.

TL;DR: In this article, the authors developed a statistical framework to explore the association between molecular-level mutation activity of SARS-CoV-2 and population-level disease transmissibility of COVID-19.
References
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Journal ArticleDOI

The Sequence Alignment/Map format and SAMtools

TL;DR: SAMtools as discussed by the authors implements various utilities for post-processing alignments in the SAM format, such as indexing, variant caller and alignment viewer, and thus provides universal tools for processing read alignments.
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MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

TL;DR: This version of MAFFT has several new features, including options for adding unaligned sequences into an existing alignment, adjustment of direction in nucleotide alignment, constrained alignment and parallel processing, which were implemented after the previous major update.
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Matplotlib: A 2D Graphics Environment

TL;DR: Matplotlib is a 2D graphics package used for Python for application development, interactive scripting, and publication-quality image generation across user interfaces and operating systems.
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A Novel Coronavirus from Patients with Pneumonia in China, 2019.

TL;DR: Human airway epithelial cells were used to isolate a novel coronavirus, named 2019-nCoV, which formed a clade within the subgenus sarbecovirus, Orthocoronavirinae subfamily, which is the seventh member of the family of coronaviruses that infect humans.
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