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Open AccessJournal ArticleDOI

Structural and Functional Analysis of the D614G SARS-CoV-2 Spike Protein Variant.

TLDR
It is shown that D614G was more infectious than the ancestral form on human lung cells, colon cells, and on cells rendered permissive by ectopic expression of human ACE2 or of ACE2 orthologs from various mammals, including Chinese rufous horseshoe bat and Malayan pangolin.
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This article is published in Cell.The article was published on 2020-10-29 and is currently open access. It has received 840 citations till now. The article focuses on the topics: Virion membrane & Protein structure.

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SARS-CoV-2 variants, spike mutations and immune escape.

TL;DR: A review of the literature on mutations of the SARS-CoV-2 spike protein, the primary antigen, focusing on their impacts on antigenicity and contextualizing them in the protein structure is presented in this article.
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Spike mutation D614G alters SARS-CoV-2 fitness.

TL;DR: Hamsters infected with SARS-CoV-2 expressing spike D614G (G614 virus) produced higher infectious titres in nasal washes and the trachea, but not in the lungs, supporting clinical evidence showing that the mutation enhances viral loads in the upper respiratory tract of COVID-19 patients and may increase transmission.
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Detection of a SARS-CoV-2 variant of concern in South Africa.

TL;DR: A newly arisen lineage of SARS-CoV-2 (designated 501Y.V2) was identified in South Africa after the first wave of the epidemic in a severely affected metropolitan area (Nelson Mandela Bay) that is located on the coast of the Eastern Cape province.
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Mechanisms of SARS-CoV-2 entry into cells.

TL;DR: In this article, structural and cellular foundations for understanding the multistep SARS-CoV-2 entry process, including S protein synthesis, S protein structure, conformational transitions necessary for association of the spike (S) protein with ACE2, engagement of the receptor-binding domain of the S protein with ACS, proteolytic activation of S protein, endocytosis and membrane fusion are provided.
References
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Generation of Synthetic Severe Acute Respiratory Syndrome Coronavirus Pseudoparticles: Implications for Assembly and Vaccine Production

TL;DR: It is reported that two viral genes, encoding the SARS-CoV membrane (M) and nucleocapsid (N) proteins, are necessary and sufficient for formation of virus-like particles and the generation of safe, conformational mimetics of the Sars virus that may facilitate the development of vaccines and antiviral drugs.
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We shouldn't worry when a virus mutates during disease outbreaks.

TL;DR: In reality, mutations are a natural part of the virus life cycle and rarely impact outbreaks dramatically, so discussions of mutations thrive during virus outbreaks, including the ongoing spread of SARS-CoV-2.
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Thinking Outside the Triangle: Replication Fidelity of the Largest RNA Viruses

TL;DR: This review compares the fidelity of small RNA viruses with that of the largest RNA viruses, the coronaviruses, and proposes models for regulation of coronavirus fidelity and discusses the implications of altered fidelity for RNA virus replication, pathogenesis, and evolution.
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A planarian nidovirus expands the limits of RNA genome size.

TL;DR: The evolutionary analysis suggests that PSCNV diverged early from multi-ORF nidoviruses, and acquired additional genes, including those typical of large DNA viruses or hosts, e.g. Ankyrin and Fibronectin type II, which might modulate virus-host interactions.
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