University of California

About: University of California is a education organization based out in Oakland, California, United States. It is known for research contribution in the topics: Population & Layer (electronics). The organization has 55175 authors who have published 52933 publications receiving 1491169 citations. The organization is also known as: UC & University of California System.

Improved maize reference genome with single molecule technologies

Abstract: Complete and accurate reference genomes and annotations provide fundamental tools for characterization of genetic and functional variation. These resources facilitate elucidation of biological processes and support translation of research findings into improved and sustainable agricultural technologies. Many reference genomes for crop plants have been generated over the past decade, but these genomes are often fragmented and missing complex repeat regions. Here, we report the assembly and annotation of maize, a genetic and agricultural model species, using Single Molecule Real-Time (SMRT) sequencing and high-resolution optical mapping. Relative to the previous reference genome, our assembly features a 52-fold increase in contig length and significant improvements in the assembly of intergenic spaces and centromeres. Characterization of the repetitive portion of the genome revealed over 130,000 intact transposable elements (TEs), allowing us to identify TE lineage expansions unique to maize. Gene annotations were updated using 111,000 full-length transcripts obtained by SMRT sequencing. In addition, comparative optical mapping of two other inbreds revealed a prevalence of deletions in the low gene density region and maize lineage-specific genes.

Daily Variation in Adolescents' Sleep, Activities, and Psychological Well-Being

Abstract: The daily diary method was employed to examine the daily dynamics of adolescent sleep time, activities, and psychological well being among an ethnically diverse sample of over 750 adolescents approximately 14 to 15 years of age. Studying and stressful demands during the day were modestly but consistently associated with less sleep that evening. Receiving less sleep at night, in turn, was modestly but consistently related to higher levels of anxiety, depressive feelings, and fatigue during the following day. In addition, the daily variability in adolescents’ sleep time was notable and just as important for the youths’ average levels of daily psychological well being as was the average amount of time spent sleeping each night. A small number of ethnic and gender differences emerged in the dynamics of adolescent sleep, activities, and well being. Discussion focuses on the importance of examining daily variability in adolescents’ sleep behaviors in order to better understand the implications of sleep for adolescent well being and development.

A Corpus for Research on Deliberation and Debate

Abstract: Deliberative, argumentative discourse is an important component of opinion formation, belief revision, and knowledge discovery; it is a cornerstone of modern civil society. Argumentation is productively studied in branches ranging from theoretical artificial intelligence to political rhetoric, but empirical analysis has suffered from a lack of freely available, unscripted argumentative dialogs. This paper presents the Internet Argument Corpus (IAC), a set of 390,704 posts in 11,800 discussions extracted from the online debate site 4forums.com. A 2866 thread/130,206 post extract of the corpus has been manually sided for topic of discussion, and subsets of this topic-labeled extract have been annotated for several dialogic and argumentative markers: degrees of agreement with a previous post, cordiality, audience-direction, combativeness, assertiveness, emotionality of argumentation, and sarcasm. As an application of this resource, the paper closes with a discussion of the relationship between discourse marker pragmatics, agreement, emotionality, and sarcasm in the IAC corpus.

Scanning tip microwave near field microscope

Abstract: A microwave near field microscope has a novel microwave probe structure wherein the probing field of evanescent radiation is emitted from a sharpened metal tip instead of an aperture or gap. This sharpened tip, which is electrically and mechanically connected to a central electrode, extends through and beyond an aperture in an endwall of a microwave resonating device such as a microwave cavity resonator or a microwave stripline resonator. Since the field intensity at the tip increases as the tip sharpens, the total energy which is radiated from the tip and absorbed by the sample increases as the tip sharpens. The result is improved spatial resolution without sacrificing sensitivity.