University of California

About: University of California is a education organization based out in Oakland, California, United States. It is known for research contribution in the topics: Population & Layer (electronics). The organization has 55175 authors who have published 52933 publications receiving 1491169 citations. The organization is also known as: UC & University of California System.

Reference genome sequence of the model plant Setaria

Abstract: We generated a high-quality reference genome sequence for foxtail millet (Setaria italica). The ~400-Mb assembly covers ~80% of the genome and >95% of the gene space. The assembly was anchored to a 992-locus genetic map and was annotated by comparison with >1.3 million expressed sequence tag reads. We produced more than 580 million RNA-Seq reads to facilitate expression analyses. We also sequenced Setaria viridis, the ancestral wild relative of S. italica, and identified regions of differential single-nucleotide polymorphism density, distribution of transposable elements, small RNA content, chromosomal rearrangement and segregation distortion. The genus Setaria includes natural and cultivated species that demonstrate a wide capacity for adaptation. The genetic basis of this adaptation was investigated by comparing five sequenced grass genomes. We also used the diploid Setaria genome to evaluate the ongoing genome assembly of a related polyploid, switchgrass (Panicum virgatum).

Evidence for magnetic field reconnection at the Earth's magnetopause

Abstract: Eleven passes of the ISEE satellites through the frontside terrestrial magnetopause were identified, where the plasma velocity in the magnetopause and boundary layer was substantially larger than in the magnetosheath. The nature of the plasma flow, magnetic field, and energetic particle fluxes in these regions were examined, with a view to determining whether the velocity enhancements can be explained by magnetic field reconnection.

Towards responsible use of cognitive-enhancing drugs by the healthy

Abstract: Society must respond to the growing demand for cognitive enhancement. That response must start by rejecting the idea that 'enhancement' is a dirty word, argue Henry Greely and colleagues.

Discrete Choice Models in Preference Space and Willingness-to Pay Space

Abstract: In models with unobserved taste heterogeneity, distributional assumptions can be placed in two ways: (1) by specifying the distribution of coefficients in the utility function and deriving the distribution of willingness to pay (WTP), or (2) by specifying the distribution of WTP and deriving the distribution of coefficients. In general the two approaches are equivalent, in that any mutually compatible distributions for coefficients and WTP can be represented in either way. However, in practice, convenient distributions, such as normal or log-normal, are usually specified, and these convenient distributions have different implications when placed on WTP’s than on coefficients. We compare models that use normal and log-normal distributions for coefficients (called models in preference space) with models using these distributions for WTP (called models in WTP space). We find that the models in preference space fit the data better but provide less reasonable distributions of WTP than the models in WTP space. Our findings suggests that further work is needed to identify distributions that either fit better when applied in WTP space or imply more reasonable distributions of WTP when applied in preference space.

Modeling fluvial erosion on regional to continental scales

Abstract: The fluvial system is a major concern in modeling landform evolution in response to tectonic deformation. Three stream bed types (bedrock, coarse-bed alluvial, and fine-bed alluvial) differ in factors controlling their occurrence and evolution and in appropriate modeling approaches. Spatial and temporal transitions among bed types occur in response to changes in sediment characteristics and tectonic deformation. Erosion in bedrock channels depends upon the ability to scour or pluck bed material; this detachment capacity is often a power function of drainage area and gradient. Exposure of bedrock in channel beds, due to rapid downcutting or resistant rock, slows the response of headwater catchments to downstream baselevel changes. Sediment routing through alluvial channels must account for supply from slope erosion, transport rates, abrasion, and sorting. In regional landform modeling, implicit rate laws must be developed for sediment production from erosion of sub-grid-scale slopes and small channels.