Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
Rajeev K. Varshney,S. Murali Mohan,Pooran M. Gaur,N. V. P. R. Gangarao,Manish K. Pandey,Manish K. Pandey,Abhishek Bohra,S. L. Sawargaonkar,Annapurna Chitikineni,Paul Kimurto,Pasupuleti Janila,Kulbhushan Saxena,Asnake Fikre,Mamta Sharma,Abhishek Rathore,Aditya Pratap,Shailesh Tripathi,Subhojit Datta,Sushil K. Chaturvedi,Nalini Mallikarjuna,G. Anuradha,Anita Babbar,A. K. Choudhary,M. B. Mhase,Ch. Bharadwaj,D. M. Mannur,P. N. Harer,Baozhu Guo,Xuanqiang Liang,N. Nadarajan,C. L. L. Gowda +30 more
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TLDR
The use of integrated genomics and breeding approach in these legume crops to enhance crop productivity in marginal environments ensuring food security in developing countries is proposed.About:
This article is published in Biotechnology Advances.The article was published on 2013-12-01 and is currently open access. It has received 278 citations till now. The article focuses on the topics: Molecular breeding.read more
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Book ChapterDOI
Molecular and Genomic Tools Provide Insights on Crop Domestication and Evolution
Mulatu Geleta,Rodomiro Ortiz +1 more
TL;DR: Rapid progress in genomic research and the development of genome-wide molecular markers for various crops significantly improved knowledge on plant domestication and evolution, and genes underlying domestication syndrome traits show a significant loss of diversity.
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The Orphan Legume Genome Whose Time Has Come: Symposium Highlights from the American Peanut Research & Education Society Annual Meeting
TL;DR: The Peanut Genome Project was launched in 2012 and a genomics symposium was held at the 2012 annual meeting of the American Peanut Research and Education Society, where seven speakers presented a spectrum of topics covering peanut molecular tools and materials.
Book ChapterDOI
Towards Enriching Genomic Resources in Legumes
Aditya Pratap,Rakhi Tomar,Neha Rajan,Jitendra Kumar,Pooja Bhatnagar Mathur,Nupur Malviya,Tuba K. Anjum +6 more
TL;DR: The genomics assisted breeding (GAB) can now be successfully used in legume improvement and development of improved genotypes having improved agronomic and quality traits and resistance to biotic and abiotic stresses.
Book ChapterDOI
Emerging Genetic Technologies for Improving the Security of Food Crops
TL;DR: In this article, the authors proposed that classical breeding alone will not provide adequate breakthroughs to increase yield and quality, to solve the complex problems of biotic and abiotic stresses, and thus to meet the global food security challenges.
Large-scale transcriptome analysis in faba bean (Vicia faba L.)
TL;DR: The results reported here represent the most comprehensive transcript database developed so far in faba bean, providing valuable information that could be used to gain insight into the pathways involved in the resistance mechanism against A. fabae and to identify potential resistance genes to be further used in marker assisted selection.
References
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Gerald A. Tuskan,Gerald A. Tuskan,Stephen P. DiFazio,Stephen P. DiFazio,Stefan Jansson,Joerg Bohlmann,Igor V. Grigoriev,Uffe Hellsten,Nicholas H. Putnam,Steven G. Ralph,Stephane Rombauts,Asaf Salamov,Jacquie Schein,Lieven Sterck,Andrea Aerts,Rishikeshi Bhalerao,Rishikesh P. Bhalerao,Damien Blaudez,Wout Boerjan,Annick Brun,Amy M. Brunner,Victor Busov,Malcolm M. Campbell,John E. Carlson,Michel Chalot,Jarrod Chapman,G.-L. Chen,Dawn Cooper,Pedro M. Coutinho,Jérémy Couturier,Sarah F. Covert,Quentin C. B. Cronk,R. Cunningham,John M. Davis,Sven Degroeve,Annabelle Déjardin,Claude W. dePamphilis,John C. Detter,Bill Dirks,Inna Dubchak,Inna Dubchak,Sébastien Duplessis,Jürgen Ehlting,Brian E. Ellis,Karla C Gendler,David Goodstein,Michael Gribskov,Jane Grimwood,Andrew Groover,Lee E. Gunter,Björn Hamberger,Berthold Heinze,Yrjö Helariutta,Yrjö Helariutta,Yrjö Helariutta,Bernard Henrissat,D. Holligan,Robert A. Holt,Wenyu Huang,N. Islam-Faridi,Steven J.M. Jones,M. Jones-Rhoades,Richard A. Jorgensen,Chandrashekhar P. Joshi,Jaakko Kangasjärvi,Jan Karlsson,Colin T. Kelleher,Robert Kirkpatrick,Matias Kirst,Annegret Kohler,Udaya C. Kalluri,Frank W. Larimer,Jim Leebens-Mack,Jean-Charles Leplé,Philip F. LoCascio,Y. Lou,Susan Lucas,Francis Martin,Barbara Montanini,Carolyn A. Napoli,David R. Nelson,C D Nelson,Kaisa Nieminen,Ove Nilsson,V. Pereda,Gary F. Peter,Ryan N. Philippe,Gilles Pilate,Alexander Poliakov,J. Razumovskaya,Paul G. Richardson,Cécile Rinaldi,Kermit Ritland,Pierre Rouzé,D. Ryaboy,Jeremy Schmutz,J. Schrader,Bo Segerman,H. Shin,Asim Siddiqui,Fredrik Sterky,Astrid Terry,Chung-Jui Tsai,Edward C. Uberbacher,Per Unneberg,Jorma Vahala,Kerr Wall,Susan R. Wessler,Guojun Yang,T. Yin,Carl J. Douglas,Marco A. Marra,Göran Sandberg,Y. Van de Peer,Daniel S. Rokhsar,Daniel S. Rokhsar +115 more
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Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz,Steven B. Cannon,Jessica A. Schlueter,Jessica A. Schlueter,Jianxin Ma,Therese Mitros,William Nelson,David L. Hyten,Qijian Song,Qijian Song,Jay J. Thelen,Jianlin Cheng,Dong Xu,Uffe Hellsten,Gregory D. May,Yeisoo Yu,Tetsuya Sakurai,Taishi Umezawa,Madan K. Bhattacharyya,Devinder Sandhu,Babu Valliyodan,Erika Lindquist,Myron Peto,David Grant,Shengqiang Shu,David Goodstein,Kerrie Barry,Montona Futrell-Griggs,Brian Abernathy,Jianchang Du,Zhixi Tian,Liucun Zhu,Navdeep Gill,Trupti Joshi,Marc Libault,Ananad Sethuraman,Xue-Cheng Zhang,Kazuo Shinozaki,Henry T. Nguyen,Rod A. Wing,Perry B. Cregan,James E. Specht,Jane Grimwood,Daniel S. Rokhsar,Gary Stacey,Randy C. Shoemaker,Scott A. Jackson +46 more
TL;DR: An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Olivier Jaillon,Jean-Marc Aury,Benjamin Noel,Alberto Policriti,Christian Clepet,Alberto Casagrande,Nathalie Choisne,Sébastien Aubourg,Nicola Vitulo,Claire Jubin,Alessandro Vezzi,Fabrice Legeai,Philippe Hugueney,Corinne Dasilva,David S. Horner,Erica Mica,Delphine Jublot,Julie Poulain,Clémence Bruyère,Alain Billault,Béatrice Segurens,Michel Gouyvenoux,Edgardo Ugarte,Federica Cattonaro,Véronique Anthouard,Virginie Vico,Cristian Del Fabbro,Michael Alaux,Gabriele Di Gaspero,Vincent Dumas,Nicoletta Felice,Sophie Paillard,Irena Juman,Marco Moroldo,Simone Scalabrin,Aurélie Canaguier,Isabelle Le Clainche,G Malacrida,Eléonore Durand,Graziano Pesole,Valérie Laucou,Philippe Chatelet,Didier Merdinoglu,Massimo Delledonne,Mario Pezzotti,Alain Lecharny,Claude Scarpelli,François Artiguenave,M. Enrico Pè,Giorgio Valle,Michele Morgante,Michel Caboche,Anne-Françoise Adam-Blondon,Jean Weissenbach,Francis Quetier,Patrick Wincker +55 more
TL;DR: A high-quality draft of the genome sequence of grapevine is obtained from a highly homozygous genotype, revealing the contribution of three ancestral genomes to the grapevine haploid content and explaining the chronology of previously described whole-genome duplication events in the evolution of flowering plants.
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Nuclear DNA content of some important plant species
K. Arumuganathan,E. D. Earle +1 more
TL;DR: This survey identified several horticultural crops in a variety of families with genomes only two or three times as large asArabidopsis and several fruit trees (a pricot, cherry, mango, orange, papaya, and peach) that should facilitate molecular studies of these crops.
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The genome of the cucumber, Cucumis sativus L.
Sanwen Huang,Ruiqiang Li,Zhonghua Zhang,Li Li,Xingfang Gu,Wei Fan,William J. Lucas,Xiaowu Wang,Bingyan Xie,Peixiang Ni,Yuanyuan Ren,Hongmei Zhu,Jun Li,Kui Lin,Weiwei Jin,Zhangjun Fei,Guangcun Li,Jack E. Staub,Andrzej Kilian,Edwin A. G. van der Vossen,Yang Wu,Jie Guo,Jun He,Zhiqi Jia,Yi Ren,Geng Tian,Yao Lu,Jue Ruan,Wubin Qian,Mingwei Wang,Quanfei Huang,Bo Li,Zhaoling Xuan,Jianjun Cao,Asan,Zhigang Wu,Juanbin Zhang,Qingle Cai,Yinqi Bai,Bowen Zhao,Yonghua Han,Ying Li,Xuefeng Li,Shenhao Wang,Qiuxiang Shi,Shiqiang Liu,Won Kyong Cho,Jae-Yean Kim,Yong Xu,Katarzyna Heller-Uszynska,Han Miao,Zhouchao Cheng,Shengping Zhang,Jian Wu,Yuhong Yang,Houxiang Kang,Man Li,Huiqing Liang,Xiaoli Ren,Zhongbin Shi,Ming Wen,Min Jian,Hailong Yang,Guojie Zhang,Zhentao Yang,Rui Chen,Shifang Liu,Jianwen Li,Lijia Ma,Hui Liu,Yan Zhou,Jing Zhao,Xiaodong Fang,Guoqing Li,Lin Fang,Yingrui Li,Dongyuan Liu,Hongkun Zheng,Yong Zhang,Nan Qin,Zhuo Li,Guohua Yang,Shuang Yang,Lars Bolund,Karsten Kristiansen,Hancheng Zheng,Shaochuan Li,Xiuqing Zhang,Huanming Yang,Jing Wang,Rifei Sun,Zhang Baoxi,Shuzhi Jiang,Jun Wang,Yongchen Du,Songgang Li +95 more
TL;DR: This study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo, and identifies 686 gene clusters related to phloem function.
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