Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics
Rajeev K. Varshney,S. Murali Mohan,Pooran M. Gaur,N. V. P. R. Gangarao,Manish K. Pandey,Manish K. Pandey,Abhishek Bohra,S. L. Sawargaonkar,Annapurna Chitikineni,Paul Kimurto,Pasupuleti Janila,Kulbhushan Saxena,Asnake Fikre,Mamta Sharma,Abhishek Rathore,Aditya Pratap,Shailesh Tripathi,Subhojit Datta,Sushil K. Chaturvedi,Nalini Mallikarjuna,G. Anuradha,Anita Babbar,A. K. Choudhary,M. B. Mhase,Ch. Bharadwaj,D. M. Mannur,P. N. Harer,Baozhu Guo,Xuanqiang Liang,N. Nadarajan,C. L. L. Gowda +30 more
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TLDR
The use of integrated genomics and breeding approach in these legume crops to enhance crop productivity in marginal environments ensuring food security in developing countries is proposed.About:
This article is published in Biotechnology Advances.The article was published on 2013-12-01 and is currently open access. It has received 278 citations till now. The article focuses on the topics: Molecular breeding.read more
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Journal ArticleDOI
Analysis of genetic diversity and population structure of peanut cultivars and breeding lines from China, India and the US using simple sequence repeat markers
Hui Wang,Pawan Khera,Pawan Khera,Bingyan Huang,Mei Yuan,Ramesh Katam,Weijian Zhuang,Karen R. Harris-Shultz,Kim M. Moore,Albert K. Culbreath,Xinyou Zhang,Rajeev K. Varshney,Lianhui Xie,Baozhu Guo +13 more
TL;DR: The results could be used by breeding programs to assess the genetic diversity of breeding materials to broaden the genetic base and for molecular genetics studies.
Journal ArticleDOI
CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea
Udita Basu,Laxmi Narnoliya,Rishi Srivastava,Akash Sharma,Deepak Bajaj,Anurag Daware,Virevol Thakro,Naveen Malik,Hari D. Upadhyaya,Shailesh Tripathi,Vinay Hegde,Akhilesh K. Tyagi,Swarup K. Parida +12 more
TL;DR: A combinatorial genomic strategy delineated functionally relevant natural allele of a CLAVATA gene and its marker (haplotype)-assisted introgression led to development of the early-flowering chickpea cultivars with high flower number and enhanced yield/productivity.
BookDOI
The Peanut Genome
TL;DR: This book presents the current state of the art in peanut genomics, focusing particularly on the latest genomic findings, tools and strategies employed in genome sequencing, transcriptomes and analysis, availability of public and private genomic resources, and ways to maximize the use of this information in peanut breeding programs.
Journal ArticleDOI
Legume Genomics: From Genomic Resources to Molecular Breeding
TL;DR: Legumes comprise the third largest family of flowering plants and provide important sources of food, fodder, oil, and fiber products and are considered important to confront malnutrition among resource-poor people in developing countries.
Journal ArticleDOI
SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut (Arachis hypogaea L.).
Adama Zongo,Pawan Khera,Mahamadou Sawadogo,Yaduru Shasidhar,Manda Sriswathi,Manish K. Vishwakarma,Philippe Sankara,Bonny R. Ntare,Rajeev K. Varshney,Manish K. Pandey,Haile Desmae +10 more
TL;DR: Marker trait association for ELS in groundnut was identified through single marker analysis and selective genotyping approaches and four markers found common between the two trait mapping methods.
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Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz,Steven B. Cannon,Jessica A. Schlueter,Jessica A. Schlueter,Jianxin Ma,Therese Mitros,William Nelson,David L. Hyten,Qijian Song,Qijian Song,Jay J. Thelen,Jianlin Cheng,Dong Xu,Uffe Hellsten,Gregory D. May,Yeisoo Yu,Tetsuya Sakurai,Taishi Umezawa,Madan K. Bhattacharyya,Devinder Sandhu,Babu Valliyodan,Erika Lindquist,Myron Peto,David Grant,Shengqiang Shu,David Goodstein,Kerrie Barry,Montona Futrell-Griggs,Brian Abernathy,Jianchang Du,Zhixi Tian,Liucun Zhu,Navdeep Gill,Trupti Joshi,Marc Libault,Ananad Sethuraman,Xue-Cheng Zhang,Kazuo Shinozaki,Henry T. Nguyen,Rod A. Wing,Perry B. Cregan,James E. Specht,Jane Grimwood,Daniel S. Rokhsar,Gary Stacey,Randy C. Shoemaker,Scott A. Jackson +46 more
TL;DR: An accurate soybean genome sequence will facilitate the identification of the genetic basis of many soybean traits, and accelerate the creation of improved soybean varieties.
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The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Olivier Jaillon,Jean-Marc Aury,Benjamin Noel,Alberto Policriti,Christian Clepet,Alberto Casagrande,Nathalie Choisne,Sébastien Aubourg,Nicola Vitulo,Claire Jubin,Alessandro Vezzi,Fabrice Legeai,Philippe Hugueney,Corinne Dasilva,David S. Horner,Erica Mica,Delphine Jublot,Julie Poulain,Clémence Bruyère,Alain Billault,Béatrice Segurens,Michel Gouyvenoux,Edgardo Ugarte,Federica Cattonaro,Véronique Anthouard,Virginie Vico,Cristian Del Fabbro,Michael Alaux,Gabriele Di Gaspero,Vincent Dumas,Nicoletta Felice,Sophie Paillard,Irena Juman,Marco Moroldo,Simone Scalabrin,Aurélie Canaguier,Isabelle Le Clainche,G Malacrida,Eléonore Durand,Graziano Pesole,Valérie Laucou,Philippe Chatelet,Didier Merdinoglu,Massimo Delledonne,Mario Pezzotti,Alain Lecharny,Claude Scarpelli,François Artiguenave,M. Enrico Pè,Giorgio Valle,Michele Morgante,Michel Caboche,Anne-Françoise Adam-Blondon,Jean Weissenbach,Francis Quetier,Patrick Wincker +55 more
TL;DR: A high-quality draft of the genome sequence of grapevine is obtained from a highly homozygous genotype, revealing the contribution of three ancestral genomes to the grapevine haploid content and explaining the chronology of previously described whole-genome duplication events in the evolution of flowering plants.
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Nuclear DNA content of some important plant species
K. Arumuganathan,E. D. Earle +1 more
TL;DR: This survey identified several horticultural crops in a variety of families with genomes only two or three times as large asArabidopsis and several fruit trees (a pricot, cherry, mango, orange, papaya, and peach) that should facilitate molecular studies of these crops.
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The genome of the cucumber, Cucumis sativus L.
Sanwen Huang,Ruiqiang Li,Zhonghua Zhang,Li Li,Xingfang Gu,Wei Fan,William J. Lucas,Xiaowu Wang,Bingyan Xie,Peixiang Ni,Yuanyuan Ren,Hongmei Zhu,Jun Li,Kui Lin,Weiwei Jin,Zhangjun Fei,Guangcun Li,Jack E. Staub,Andrzej Kilian,Edwin A. G. van der Vossen,Yang Wu,Jie Guo,Jun He,Zhiqi Jia,Yi Ren,Geng Tian,Yao Lu,Jue Ruan,Wubin Qian,Mingwei Wang,Quanfei Huang,Bo Li,Zhaoling Xuan,Jianjun Cao,Asan,Zhigang Wu,Juanbin Zhang,Qingle Cai,Yinqi Bai,Bowen Zhao,Yonghua Han,Ying Li,Xuefeng Li,Shenhao Wang,Qiuxiang Shi,Shiqiang Liu,Won Kyong Cho,Jae-Yean Kim,Yong Xu,Katarzyna Heller-Uszynska,Han Miao,Zhouchao Cheng,Shengping Zhang,Jian Wu,Yuhong Yang,Houxiang Kang,Man Li,Huiqing Liang,Xiaoli Ren,Zhongbin Shi,Ming Wen,Min Jian,Hailong Yang,Guojie Zhang,Zhentao Yang,Rui Chen,Shifang Liu,Jianwen Li,Lijia Ma,Hui Liu,Yan Zhou,Jing Zhao,Xiaodong Fang,Guoqing Li,Lin Fang,Yingrui Li,Dongyuan Liu,Hongkun Zheng,Yong Zhang,Nan Qin,Zhuo Li,Guohua Yang,Shuang Yang,Lars Bolund,Karsten Kristiansen,Hancheng Zheng,Shaochuan Li,Xiuqing Zhang,Huanming Yang,Jing Wang,Rifei Sun,Zhang Baoxi,Shuzhi Jiang,Jun Wang,Yongchen Du,Songgang Li +95 more
TL;DR: This study establishes that five of the cucumber's seven chromosomes arose from fusions of ten ancestral chromosomes after divergence from Cucumis melo, and identifies 686 gene clusters related to phloem function.
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