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Genetic convergence in the adaptation of dogs and humans to the high altitude environment of the Tibetan plateau

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TLDR
It is found that the hemoglobin levels in village dogs from Tibet and those from Chinese lowlands are very similar between the two groups, suggesting that Tibetan dogs might share similar adaptive strategies as the Tibetan people.
Abstract
The high-altitude hypoxic environment represents one of the most extreme challenges for mammals. Previous studies of humans on the Tibetan plateau and in the Andes Mountains have identified statistical signatures of selection in different sets of loci. Here, we first measured the hemoglobin levels in village dogs from Tibet and those from Chinese lowlands. We found that the hemoglobin levels are very similar between the two groups, suggesting that Tibetan dogs might share similar adaptive strategies as the Tibetan people. Through a whole-genome sequencing approach, we have identified EPAS1 and HBB as candidate genes for the hypoxic adaptation on the Tibetan plateau. The population genetic analysis shows a significant convergence between humans and dogs in Tibet. The similarities in the sets of loci that exhibit putative signatures of selection and the hemoglobin levels between humans and dogs of the same environment, but not between human populations in different regions, suggests an extraordinary landscape of convergent evolution between human beings and their best friend on the Tibetan plateau.

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Journal ArticleDOI

Advances and limits of using population genetics to understand local adaptation.

TL;DR: Important limitations to population genetic analyses are highlighted including challenges with obtaining high-quality data, deciding which loci are targets of selection, and limits to identifying the genetic basis of local adaptation.
Journal ArticleDOI

Genetic signatures of high-altitude adaptation in Tibetans

TL;DR: The largest genome-wide study in Tibetans to date detects signatures of natural selection at nine gene loci, two of which are strongly associated with blood phenotypes in present day Tibetans, and shows the genetic relatedness of Tibetans with other ethnic groups in China and estimates the divergence time between Tibetans and Han.
Journal ArticleDOI

Demographic history, selection and functional diversity of the canine genome

TL;DR: Genotype–phenotype studies based first on single nucleotide polymorphism (SNP) genotyping and then with whole-genome data are summarized to show how an understanding of evolution informs topics as different as human history, adaptive and deleterious variation, morphological development, ageing, cancer and behaviour.
Journal ArticleDOI

Altitude Adaptation: A Glimpse Through Various Lenses

TL;DR: Genomic findings parallel observations conveyed by decades of physiological research: different continental populations, resident at high altitude for hundreds of generations, exhibit a distinct composite of traits at altitude, which will advance the understanding of both adaptive and non-adaptive responses to hypoxia.
References
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Journal ArticleDOI

Genome sequence, comparative analysis and haplotype structure of the domestic dog

Kerstin Lindblad-Toh, +241 more
- 08 Dec 2005 - 
TL;DR: A high-quality draft genome sequence of the domestic dog is reported, together with a dense map of single nucleotide polymorphisms (SNPs) across breeds, to shed light on the structure and evolution of genomes and genes.
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