Institution
University of Udine
Education•Udine, Italy•
About: University of Udine is a education organization based out in Udine, Italy. It is known for research contribution in the topics: Population & Large Hadron Collider. The organization has 6745 authors who have published 20530 publications receiving 669088 citations. The organization is also known as: Università degli Studi di Udine & Universita degli Studi di Udine.
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European Bioinformatics Institute1, University of Manchester2, University of California, San Francisco3, Swiss Institute of Bioinformatics4, Laboratory of Molecular Biology5, J. Craig Venter Institute6, University of Delaware7, National Institutes of Health8, University of Southern California9, Georgetown University Medical Center10, University of Padua11, University of Udine12, University College London13
TL;DR: Recent developments with InterPro (version 70.0) and its associated software are reported, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website.
Abstract: The InterPro database (http://www.ebi.ac.uk/interpro/) classifies protein sequences into families and predicts the presence of functionally important domains and sites. Here, we report recent developments with InterPro (version 70.0) and its associated software, including an 18% growth in the size of the database in terms on new InterPro entries, updates to content, the inclusion of an additional entry type, refined modelling of discontinuous domains, and the development of a new programmatic interface and website. These developments extend and enrich the information provided by InterPro, and provide greater flexibility in terms of data access. We also show that InterPro's sequence coverage has kept pace with the growth of UniProtKB, and discuss how our evaluation of residue coverage may help guide future curation activities.
1,167 citations
Ghent University1, Forschungszentrum Jülich2, Aalto University3, Åbo Akademi University4, Vienna University of Technology5, Duke University6, University of Grenoble7, École Polytechnique Fédérale de Lausanne8, Durham University9, International School for Advanced Studies10, Max Planck Society11, Uppsala University12, Fritz Haber Institute of the Max Planck Society13, Humboldt University of Berlin14, Technical University of Denmark15, National Institute of Standards and Technology16, University of Udine17, Université catholique de Louvain18, University of Basel19, Harvard University20, University of California, Davis21, Rutgers University22, University of York23, Wake Forest University24, Science and Technology Facilities Council25, University of Oxford26, University of Vienna27, Dresden University of Technology28, Leibniz Institute for Neurobiology29, Radboud University Nijmegen30, University of Tokyo31, Centre national de la recherche scientifique32, University of Cambridge33, Royal Holloway, University of London34, University of California, Santa Barbara35, University of Luxembourg36, Los Alamos National Laboratory37, Harbin Institute of Technology38
TL;DR: A procedure to assess the precision of DFT methods was devised and used to demonstrate reproducibility among many of the most widely used DFT codes, demonstrating that the precisionof DFT implementations can be determined, even in the absence of one absolute reference code.
Abstract: The widespread popularity of density functional theory has given rise to an extensive range of dedicated codes for predicting molecular and crystalline properties. However, each code implements the formalism in a different way, raising questions about the reproducibility of such predictions. We report the results of a community-wide effort that compared 15 solid-state codes, using 40 different potentials or basis set types, to assess the quality of the Perdew-Burke-Ernzerhof equations of state for 71 elemental crystals. We conclude that predictions from recent codes and pseudopotentials agree very well, with pairwise differences that are comparable to those between different high-precision experiments. Older methods, however, have less precise agreement. Our benchmark provides a framework for users and developers to document the precision of new applications and methodological improvements.
1,141 citations
TL;DR: In this paper, the authors analyzed profitability and stability of international agreements to protect the environment in the presence of trans-frontier or global pollution, and showed that such coalitions exist; that they tend to involve a fraction of negotiating countries; and that the number of signatory countries can be increased by means of self-financed transfers.
1,137 citations
Leibniz Association1, University of Zurich2, James Hutton Institute3, Murdoch University4, University of Minnesota5, National Institutes of Health6, University of California, Riverside7, European Bioinformatics Institute8, University of Udine9, University of Helsinki10, Norwich University11, Zhejiang University12, Kansas State University13, University of Adelaide14, University of East Anglia15, National Institute of Agricultural Botany16, Technische Universität München17, Lund University18, Yangtze University19, Government of Western Australia20, University of Dundee21, University of Western Australia22
TL;DR: The importance of the barley reference sequence for breeding is demonstrated by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion.
Abstract: Cereal grasses of the Triticeae tribe have been the major food source in temperate regions since the dawn of agriculture. Their large genomes are characterized by a high content of repetitive elements and large pericentromeric regions that are virtually devoid of meiotic recombination. Here we present a high-quality reference genome assembly for barley (Hordeum vulgare L.). We use chromosome conformation capture mapping to derive the linear order of sequences across the pericentromeric space and to investigate the spatial organization of chromatin in the nucleus at megabase resolution. The composition of genes and repetitive elements differs between distal and proximal regions. Gene family analyses reveal lineage-specific duplications of genes involved in the transport of nutrients to developing seeds and the mobilization of carbohydrates in grains. We demonstrate the importance of the barley reference sequence for breeding by inspecting the genomic partitioning of sequence variation in modern elite germplasm, highlighting regions vulnerable to genetic erosion.
1,105 citations
TL;DR: Polymerase chain reaction amplification of ( AT)n and (TAT)n microsatellites in soybean revealed that they are highly polymorphic, as a consequence of length variation, somatically stable and inherited in a co-dominant Mendelian manner.
Abstract: In order to assess the feasibility of using microsatellites as markers in plant genetics, a survey of published DNA sequence data for presence, abundance and ubiquity in higher plants of all types of dinucleotide and trinucleotide repeats with a minimum number of 10 and 7 units, respectively, was conducted. This search revealed that such microsatellites are frequent and widely distributed; they were uncovered in 34 species, with a frequency of one every 50 kb. AT repeats were by far the most frequently observed class of dinucleotide microsatellites, whereas AC/TG repeats, which are common in animals, were observed only once. TAT repeats prevailed among trinucleotides. Polymerase chain reaction amplification of (AT)n and (TAT)n microsatellites in soybean (Glycine max (L.) Merr.) revealed that they are highly polymorphic, as a consequence of length variation, somatically stable and inherited in a co-dominant Mendelian manner. The abundance and amount of information derived from such markers, together with the ease by which they can be identified, make them ideal markers for plant genetic linkage and physical mapping, population studies and varietal identification.
1,070 citations
Authors
Showing all 6857 results
| Name | H-index | Papers | Citations |
|---|---|---|---|
| M.-Marsel Mesulam | 150 | 558 | 90772 |
| Francesco Longo | 142 | 745 | 89859 |
| Georges Aad | 135 | 1121 | 88811 |
| Bobby Samir Acharya | 133 | 1121 | 100545 |
| G. Della Ricca | 133 | 1598 | 92678 |
| Marina Cobal | 132 | 1078 | 85437 |
| Fernando Barreiro | 130 | 1082 | 83413 |
| Saverio D'Auria | 129 | 1142 | 83684 |
| Jean-Francois Grivaz | 128 | 1322 | 97758 |
| Evgeny Starchenko | 128 | 864 | 75913 |
| Muhammad Alhroob | 127 | 880 | 71982 |
| Michele Pinamonti | 126 | 846 | 69328 |
| Reisaburo Tanaka | 126 | 967 | 69849 |
| Kerim Suruliz | 126 | 795 | 69456 |
| Kate Shaw | 125 | 841 | 70087 |