Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci.
Joel Gelernter,Ning Sun,Renato Polimanti,Robert H. Pietrzak,Daniel F. Levey,Qiongshi Lu,Yiming Hu,Boyang Li,Krishnan Radhakrishnan,Mihaela Aslan,Kei-Hoi Cheung,Yuli Li,Nallakkandi Rajeevan,Fred Sayward,Kelly M. Harrington,Quan Chen,Kelly Cho,Jacqueline Honerlaw,Saiju Pyarajan,Todd Lencz,Rachel Quaden,Yunling Shi,Haley Hunter-Zinck,J. Michael Gaziano,Henry R. Kranzler,John Concato,Hongyu Zhao,Murray B. Stein,Murray B. Stein,Million Veteran Program +29 more
TLDR
The present study supports five novel alcohol-use risk loci, with particularly strong statistical support for CRHR1, which provides novel insight regarding the biology of harmful alcohol use.About:
This article is published in Biological Psychiatry.The article was published on 2019-09-01 and is currently open access. It has received 67 citations till now. The article focuses on the topics: Alcohol dependence & ADH1B.read more
Citations
More filters
Journal ArticleDOI
Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits
Hang Zhou,Hang Zhou,Julia Sealock,Sandra Sanchez-Roige,Toni-Kim Clarke,Daniel F. Levey,Daniel F. Levey,Zhongshan Cheng,Zhongshan Cheng,Boyang Li,Renato Polimanti,Renato Polimanti,Rachel L. Kember,Rachel L. Kember,Rachel Vickers Smith,Johan H. Thygesen,Marsha Y. Morgan,Stephen R. Atkinson,Mark Thursz,Mette Nyegaard,Manuel Mattheisen,Manuel Mattheisen,Manuel Mattheisen,Anders D. Børglum,Emma C. Johnson,Emma C. Johnson,Amy C. Justice,Amy C. Justice,Abraham A. Palmer,Andrew McQuillin,Lea K. Davis,Howard J. Edenberg,Arpana Agrawal,Henry R. Kranzler,Henry R. Kranzler,Joel Gelernter,Joel Gelernter +36 more
TL;DR: A genetic study of problematic alcohol use in 435,563 individuals, including data from the Million Veteran Program, Psychiatric Genomics Consortium and UK Biobank, found many novel risk loci and provided new insights into trait biology.
Genome-Wide Association Study Meta-Analysis of the Alcohol Use Disorders Identification Test (AUDIT) in Two Population-Based Cohorts
Sandra Sanchez-Roige,Abraham A. Palmer,Pierre Fontanillas,Sarah L. Elson,Mark Adams,David M. Howard,Howard J. Edenberg,Gail Davies,Richard C. Crist,Ian J. Deary,Andrew M. McIntosh,Toni-Kim Clarke +11 more
TL;DR: AUDIT scores ascertained in population-based cohorts can be used to explore the genetic basis of both alcohol consumption and alcohol use disorders.
Journal ArticleDOI
Reproducible Genetic Risk Loci for Anxiety: Results From ∼200,000 Participants in the Million Veteran Program.
Daniel F. Levey,Joel Gelernter,Renato Polimanti,Hang Zhou,Zhongshan Cheng,Mihaela Aslan,Rachel Quaden,John Concato,Krishnan Radhakrishnan,Julien Bryois,Patrick F. Sullivan,Murray B. Stein +11 more
TL;DR: The authors identified novel genome-wide significant associations near genes involved with global regulation of gene expression (SATB1) and the estrogen receptor alpha (ESR1), which may have implications for genetic vulnerability across several psychiatric disorders.
Journal ArticleDOI
Recent Efforts to Dissect the Genetic Basis of Alcohol Use and Abuse.
TL;DR: It is demonstrated that the genetic architecture of alcohol consumption only partially overlaps with the genetics of clinically defined AUD, and how future studies will require careful phenotype harmonization to properly capture the genetic liability to AUD is outlined.
Journal ArticleDOI
Post-traumatic stress disorder: clinical and translational neuroscience from cells to circuits
Kerry J. Ressler,Sabina Berretta,Vadim Y. Bolshakov,Isabelle M. Rosso,Edward G. Meloni,Scott L. Rauch,William A. Carlezon +6 more
TL;DR: Ressler et al. as mentioned in this paper described the clinical features and current treatments for PTSD, examined the neurobiology of symptom domains, highlight genomic advances and discuss translational approaches to understanding mechanisms and identifying new treatments and interventions for this devastating syndrome.
References
More filters
Journal ArticleDOI
Controlling the false discovery rate: a practical and powerful approach to multiple testing
Yoav Benjamini,Yosef Hochberg +1 more
TL;DR: In this paper, a different approach to problems of multiple significance testing is presented, which calls for controlling the expected proportion of falsely rejected hypotheses -the false discovery rate, which is equivalent to the FWER when all hypotheses are true but is smaller otherwise.
Journal ArticleDOI
METAL: fast and efficient meta-analysis of genomewide association scans.
TL;DR: METAL provides a computationally efficient tool for meta-analysis of genome-wide association scans, which is a commonly used approach for improving power complex traits gene mapping studies.
Journal ArticleDOI
LD score regression distinguishes confounding from polygenicity in genome-wide association studies :
Brendan Bulik-Sullivan,Po-Ru Loh,Hilary K. Finucane,Stephan Ripke,Jian Yang,Nick Patterson,Mark J. Daly,Alkes L. Price,Benjamin M. Neale +8 more
TL;DR: It is found that polygenicity accounts for the majority of the inflation in test statistics in many GWAS of large sample size, and the LD Score regression intercept can be used to estimate a more powerful and accurate correction factor than genomic control.
Journal ArticleDOI
Genetic effects on gene expression across human tissues.
Enhancing GTEx (eGTEx) groups,Nih Common Fund,Nhgri,Biospecimen Core Resource—VARI,Elsi study,Genome Browser Data Integration Visualization—EBI,Lead analysts,Alexis Battle,Christopher D. Brown,Barbara E. Engelhardt,Stephen B. Montgomery +10 more
TL;DR: It is found that local genetic variation affects gene expression levels for the majority of genes, and inter-chromosomal genetic effects for 93 genes and 112 loci are identified, enabling a mechanistic interpretation of gene regulation and the genetic basis of disease.
Journal ArticleDOI
An atlas of genetic correlations across human diseases and traits.
Brendan Bulik-Sullivan,Brendan Bulik-Sullivan,Hilary K. Finucane,Verneri Anttila,Verneri Anttila,Alexander Gusev,Felix R. Day,Po-Ru Loh,Po-Ru Loh,Laramie E. Duncan,Laramie E. Duncan,John R. B. Perry,Nick Patterson,Elise B. Robinson,Elise B. Robinson,Mark J. Daly,Mark J. Daly,Alkes L. Price,Alkes L. Price,Benjamin M. Neale,Benjamin M. Neale +20 more
TL;DR: This work introduces a technique—cross-trait LD Score regression—for estimating genetic correlation that requires only GWAS summary statistics and is not biased by sample overlap, and uses this method to estimate 276 genetic correlations among 24 traits.
Related Papers (5)
Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use
Transancestral GWAS of alcohol dependence reveals common genetic underpinnings with psychiatric disorders
Raymond K. Walters,Raymond K. Walters,Renato Polimanti,Emma C. Johnson,Jeanette N. McClintick,Mark Adams,Amy E. Adkins,Fazil Aliev,Silviu-Alin Bacanu,Anthony Batzler,Sarah Bertelsen,Joanna M. Biernacka,Tim B. Bigdeli,Li-Shiun Chen,Toni-Kim Clarke,Yi-Ling Chou,Franziska Degenhardt,Anna R. Docherty,Alexis C. Edwards,Pierre Fontanillas,Jerome C. Foo,Louis Fox,Josef Frank,Ina Giegling,Scott Gordon,Laura M. Hack,Annette M. Hartmann,Sarah M. Hartz,Stefanie Heilmann-Heimbach,Stefan Herms,Stefan Herms,Colin A. Hodgkinson,Per Hoffmann,Per Hoffmann,Jouke-Jan Hottenga,Martin A. Kennedy,Mervi Alanne-Kinnunen,Bettina Konte,Jari Lahti,Marius Lahti-Pulkkinen,Dongbing Lai,Lannie Ligthart,Anu Loukola,Brion S. Maher,Hamdi Mbarek,Andrew M. McIntosh,Matthew B. McQueen,Jacquelyn L. Meyers,Yuri Milaneschi,Teemu Palviainen,John F. Pearson,Roseann E. Peterson,Samuli Ripatti,Euijung Ryu,Nancy L. Saccone,Jessica E. Salvatore,Sandra Sanchez-Roige,Melanie L. Schwandt,Richard Sherva,Fabian Streit,Jana Strohmaier,Nathaniel Thomas,Jen-Chyong Wang,Bradley T. Webb,Robbee Wedow,Leah Wetherill,Amanda G. Wills,Jason D. Boardman,Danfeng Chen,Doo Sup Choi,William E. Copeland,Robert Culverhouse,Norbert Dahmen,Louisa Degenhardt,Benjamin W. Domingue,Sarah L. Elson,Mark A. Frye,Wolfgang Gäbel,Caroline Hayward,Marcus Ising,Margaret Keyes,Falk Kiefer,John Kramer,Samuel Kuperman,Susanne Lucae,Michael T. Lynskey,Wolfgang Maier,Karl Mann,Satu Männistö,Bertram Müller-Myhsok,Alison D. Murray,John I. Nurnberger,Aarno Palotie,Ulrich W. Preuss,Katri Räikkönen,Maureen Reynolds,Monika Ridinger,Norbert Scherbaum,Marc A. Schuckit,Michael Soyka,Michael Soyka,Jens Treutlein,Stephanie H. Witt,Norbert Wodarz,Peter Zill,Daniel E. Adkins,Joseph M. Boden,Dorret I. Boomsma,Laura J. Bierut,Sandra A. Brown,Kathleen K. Bucholz,Sven Cichon,E. Jane Costello,Harriet de Wit,Nancy Diazgranados,Danielle M. Dick,Johan G. Eriksson,Lindsay A. Farrer,Tatiana Foroud,Nathan A. Gillespie,Alison Goate,David Goldman,Richard A. Grucza,Dana B. Hancock,Kathleen Mullan Harris,Andrew C. Heath,Victor Hesselbrock,John K. Hewitt,Christian J. Hopfer,John Horwood,William G. Iacono,Eric O. Johnson,Jaakko Kaprio,Victor M. Karpyak,Kenneth S. Kendler,Henry R. Kranzler,Kenneth Krauter,Paul Lichtenstein,Penelope A. Lind,Matt McGue,James MacKillop,Pamela A. F. Madden,Hermine H. Maes,Patrik K. E. Magnusson,Nicholas G. Martin,Sarah E. Medland,Grant W. Montgomery,Elliot C. Nelson,Markus M. Nöthen,Abraham A. Palmer,Nancy L. Pedersen,Brenda W. J. H. Penninx,Bernice Porjesz,John P. Rice,Marcella Rietschel,Brien P. Riley,Richard J. Rose,Dan Rujescu,Pei-Hong Shen,Judy L. Silberg,Michael C. Stallings,Ralph E. Tarter,Michael M. Vanyukov,Scott I. Vrieze,Tamara L. Wall,John Whitfield,Hongyu Zhao,Benjamin M. Neale,Benjamin M. Neale,Joel Gelernter,Howard J. Edenberg,Arpana Agrawal +171 more
The heritability of alcohol use disorders: a meta-analysis of twin and adoption studies.
The UK Biobank resource with deep phenotyping and genomic data
Clare Bycroft,Colin Freeman,Desislava Petkova,Desislava Petkova,Gavin Band,Lloyd T. Elliott,Kevin Sharp,Allan Motyer,Damjan Vukcevic,Olivier Delaneau,Olivier Delaneau,Jared O'Connell,Adrian Cortes,Adrian Cortes,Samantha Welsh,Alan Young,Mark Effingham,Gil McVean,Stephen Leslie,Naomi E. Allen,Peter Donnelly,Jonathan Marchini +21 more
A global reference for human genetic variation.
Adam Auton,Gonçalo R. Abecasis,David Altshuler,Richard Durbin,David R. Bentley,Aravinda Chakravarti,Andrew G. Clark,Peter Donnelly,Evan E. Eichler,Paul Flicek,Stacey Gabriel,Richard A. Gibbs,Eric D. Green,Matthew E. Hurles,Bartha Maria Knoppers,Jan O. Korbel,Eric S. Lander,Charles Lee,Hans Lehrach,Elaine R. Mardis,Gabor T. Marth,Gil McVean,Deborah A. Nickerson,Jeanette Schmidt,Stephen T. Sherry,Jun Wang,Richard K. Wilson,Eric Boerwinkle,Harsha Doddapaneni,Yi Han,Viktoriya Korchina,Christie Kovar,Sandra L. Lee,Donna M. Muzny,Jeffrey G. Reid,Yiming Zhu,Yuqi Chang,Qiang Feng,Qiang Feng,Xiaodong Fang,Xiaodong Fang,Xiaosen Guo,Xiaosen Guo,Min Jian,Min Jian,Hui Jiang,Hui Jiang,Xin Jin,Tianming Lan,Guoqing Li,Jingxiang Li,Yingrui Li,Shengmao Liu,Xiao Liu,Xiao Liu,Yao Lu,Xuedi Ma,Meifang Tang,Bo Wang,Guangbiao Wang,Honglong Wu,Renhua Wu,Xun Xu,Ye Yin,Dandan Zhang,Wenwei Zhang,Jiao Zhao,Meiru Zhao,Xiaole Zheng,Namrata Gupta,Neda Gharani,Lorraine Toji,Norman P. Gerry,Alissa M. Resch,Jonathan Barker,Laura Clarke,Laurent Gil,Sarah E. Hunt,Gavin Kelman,Eugene Kulesha,Rasko Leinonen,William M. McLaren,Rajesh Radhakrishnan,Asier Roa,Dmitriy Smirnov,Richard Smith,Ian Streeter,Anja Thormann,Iliana Toneva,Brendan Vaughan,Xiangqun Zheng-Bradley,Russell J. Grocock,Sean Humphray,Terena James,Zoya Kingsbury,Ralf Sudbrak,M. Albrecht,Vyacheslav Amstislavskiy,Tatiana A. Borodina,Matthias Lienhard,Florian Mertes,Marc Sultan,Bernd Timmermann,Marie-Laure Yaspo,Lucinda Fulton,Victor Ananiev,Zinaida Belaia,Dimitriy Beloslyudtsev,Nathan Bouk,Chao Chen,Deanna M. Church,Robert M. Cohen,Charles Cook,John Garner,Timothy Hefferon,Mikhail Kimelman,Chunlei Liu,John Lopez,Peter Meric,Chris O’Sullivan,Yuri Ostapchuk,Lon Phan,Sergiy Ponomarov,Valerie A. Schneider,Eugene Shekhtman,Karl Sirotkin,Douglas J. Slotta,Hua Zhang,Senduran Balasubramaniam,John Burton,Petr Danecek,Thomas M. Keane,Anja Kolb-Kokocinski,Shane A. McCarthy,James Stalker,Michael A. Quail,Christopher Davies,Jeremy Gollub,Teresa Webster,Brant Wong,Yiping Zhan,Christopher L. Campbell,Yu Kong,Anthony Marcketta,Fuli Yu,Lilian Antunes,Matthew N. Bainbridge,Aniko Sabo,Zhuoyi Huang,Lachlan J. M. Coin,Lin Fang,Lin Fang,Qibin Li,Zhenyu Li,Haoxiang Lin,Binghang Liu,Ruibang Luo,Haojing Shao,Haojing Shao,Yinlong Xie,Chen Ye,Chang Yu,Fan Zhang,Hancheng Zheng,Zhu Hongmei,Can Alkan,Elif Dal,Fatma Kahveci,Erik Garrison,Deniz Kural,Wan-Ping Lee,Wen Fung Leong,Michael Strömberg,Alistair Ward,Jiantao Wu,Mengyao Zhang,Mark J. Daly,Mark A. DePristo,Robert E. Handsaker,Robert E. Handsaker,Eric Banks,Gaurav Bhatia,Guillermo del Angel,Giulio Genovese,Heng Li,Seva Kashin,Seva Kashin,Steven A. McCarroll,Steven A. McCarroll,James Nemesh,Ryan Poplin,Seungtai Yoon,Jayon Lihm,Vladimir Makarov,Srikanth Gottipati,Alon Keinan,Juan L. Rodriguez-Flores,Tobias Rausch,Markus Hsi-Yang Fritz,Adrian M. Stütz,Kathryn Beal,Avik Datta,Javier Herrero,Graham R. S. Ritchie,Daniel R. Zerbino,Pardis C. Sabeti,Pardis C. Sabeti,Ilya Shlyakhter,Ilya Shlyakhter,Stephen F. Schaffner,Stephen F. Schaffner,Joseph J. Vitti,Joseph J. Vitti,David Neil Cooper,Edward V. Ball,Peter D. Stenson,Bret Barnes,Markus J. Bauer,R. Keira Cheetham,Anthony J. Cox,Michael A. Eberle,Scott Kahn,Lisa Murray,John F. Peden,Richard Shaw,Eimear E. Kenny,Mark A. Batzer,Miriam K. Konkel,Jerilyn A. Walker,Daniel G. MacArthur,Monkol Lek,Ralf Herwig,Li Ding,Daniel C. Koboldt,David E. Larson,Kai Ye,Simon Gravel,Anand Swaroop,Emily Y. Chew,Tuuli Lappalainen,Yaniv Erlich,Melissa Gymrek,Melissa Gymrek,Thomas Willems,Jared T. Simpson,Mark D. Shriver,Jeffrey A. Rosenfeld,Carlos Bustamante,Stephen B. Montgomery,Francisco M. De La Vega,Jake K. Byrnes,Andrew Carroll,Marianne K. DeGorter,Phil Lacroute,Brian K. Maples,Alicia R. Martin,Andrés Moreno-Estrada,Andrés Moreno-Estrada,Suyash Shringarpure,Fouad Zakharia,Eran Halperin,Eran Halperin,Yael Baran,Eliza Cerveira,Jaeho Hwang,Ankit Malhotra,Dariusz Plewczynski,Kamen Radew,Mallory Romanovitch,Chengsheng Zhang,Fiona Hyland,David Craig,Alexis Christoforides,Nils Homer,Tyler Izatt,Ahmet Kurdoglu,Shripad Sinari,Kevin Squire,Chunlin Xiao,Jonathan Sebat,Danny Antaki,Madhusudan Gujral,Amina Noor,Kenny Ye,Esteban G. Burchard,Ryan D. Hernandez,Christopher R. Gignoux,David Haussler,David Haussler,Sol Katzman,W. James Kent,Bryan Howie,Andres Ruiz-Linares,Emmanouil T. Dermitzakis,Emmanouil T. Dermitzakis,Scott E. Devine,Hyun Min Kang,Jeffrey M. Kidd,Thomas W. Blackwell,Sean Caron,Wei Chen,S. Emery,Lars G. Fritsche,Christian Fuchsberger,Goo Jun,Goo Jun,Bingshan Li,Robert H. Lyons,Chris Scheller,Carlo Sidore,Carlo Sidore,Carlo Sidore,Shiya Song,Elzbieta Sliwerska,Daniel Taliun,Adrian Tan,Ryan P. Welch,Mary Kate Wing,Xiaowei Zhan,Philip Awadalla,Philip Awadalla,Alan Hodgkinson,Yun Li,Xinghua Shi,Andrew Quitadamo,Gerton Lunter,Jonathan Marchini,Simon Myers,Claire Churchhouse,Olivier Delaneau,Olivier Delaneau,Anjali Gupta-Hinch,Warren W. Kretzschmar,Zamin Iqbal,Iain Mathieson,Androniki Menelaou,Androniki Menelaou,Andy Rimmer,Dionysia Kiara Xifara,Taras K. Oleksyk,Yunxin Fu,Xiaoming Liu,Momiao Xiong,Lynn B. Jorde,David J. Witherspoon,Jinchuan Xing,Brian L. Browning,Sharon R. Browning,Fereydoun Hormozdiari,Peter H. Sudmant,Ekta Khurana,Chris Tyler-Smith,Cornelis A. Albers,Qasim Ayub,Yuan Chen,Vincenza Colonna,Vincenza Colonna,Luke Jostins,Klaudia Walter,Yali Xue,Mark Gerstein,Alexej Abyzov,Suganthi Balasubramanian,Jieming Chen,Declan Clarke,Yao Fu,Arif Harmanci,Mike Jin,Dong-Hoon Lee,Jeremy Liu,Xinmeng Jasmine Mu,Xinmeng Jasmine Mu,Jing Zhang,Yan Zhang,Christopher Hartl,Khalid Shakir,Jeremiah D. Degenhardt,Sascha Meiers,Benjamin Raeder,Francesco Paolo Casale,Oliver Stegle,Eric-Wubbo Lameijer,Ira M. Hall,Vineet Bafna,Jacob J. Michaelson,Eugene J. Gardner,Ryan E. Mills,Gargi Dayama,Ken Chen,Xian Fan,Zechen Chong,Tenghui Chen,Mark Chaisson,John Huddleston,Maika Malig,Bradley J. Nelson,Nicholas F. Parrish,Ben Blackburne,Sarah J. Lindsay,Zemin Ning,Yujun Zhang,Hugo Y. K. Lam,Cristina Sisu,Danny Challis,Uday S. Evani,James T. Lu,Uma Nagaswamy,Jin Yu,Wangshen Li,Lukas Habegger,Haiyuan Yu,Fiona Cunningham,Ian Dunham,Kasper Lage,Kasper Lage,Jakob Berg Jespersen,Jakob Berg Jespersen,Jakob Berg Jespersen,Heiko Horn,Heiko Horn,Donghoon Kim,Rob DeSalle,Apurva Narechania,Melissa A. Wilson Sayres,Fernando L. Mendez,G. David Poznik,Peter A. Underhill,David Mittelman,Ruby Banerjee,Maria Cerezo,Thomas W. Fitzgerald,Sandra Louzada,Andrea Massaia,Fengtang Yang,Divya Kalra,Walker Hale,Xu Dan,Kathleen C. Barnes,Christine Beiswanger,Hongyu Cai,Hongzhi Cao,Hongzhi Cao,Brenna M. Henn,Danielle Jones,Jane Kaye,Alastair Kent,Angeliki Kerasidou,Rasika A. Mathias,Pilar N. Ossorio,Michael Parker,Charles N. Rotimi,Charmaine D.M. Royal,Karla Sandoval,Yeyang Su,Zhongming Tian,Sarah A. Tishkoff,Marc Via,Yuhong Wang,Huanming Yang,Ling Yang,Jiayong Zhu,Walter F. Bodmer,Gabriel Bedoya,Zhiming Cai,Yang Gao,Jiayou Chu,Leena Peltonen,Andrés C. García-Montero,Alberto Orfao,Julie Dutil,Juan Carlos Martínez-Cruzado,R. Mathias,Anselm Hennis,Harold Watson,Colin A. McKenzie,Firdausi Qadri,Regina C. LaRocque,Xiaoyan Deng,Danny Asogun,Onikepe A. Folarin,Christian T. Happi,Omonwunmi Omoniwa,Matt Stremlau,Matt Stremlau,Ridhi Tariyal,Ridhi Tariyal,M Jallow,M Jallow,Fatoumatta Sisay Joof,Fatoumatta Sisay Joof,Tumani Corrah,Tumani Corrah,Kirk A. Rockett,Kirk A. Rockett,Dominic P. Kwiatkowski,Dominic P. Kwiatkowski,Jaspal S. Kooner,Tran Tinh Hien,Sarah J. Dunstan,Sarah J. Dunstan,Nguyen ThuyHang,Richard Fonnie,Robert F. Garry,Lansana Kanneh,Lina M. Moses,John S. Schieffelin,Donald S. Grant,Carla Gallo,Giovanni Poletti,Danish Saleheen,Asif Rasheed,Lisa D. Brooks,Adam Felsenfeld,Jean E. McEwen,Yekaterina Vaydylevich,Audrey Duncanson,Michael Dunn,Jeffery A. Schloss +517 more