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Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?
Sarah M. Schmidt,Ralph Panstruga +1 more
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TLDR
A new insight is the presence of lineage-specific genes on mobile and partly dispensable chromosomes that are transferred intraspecifically and possibly interspecifically, thereby constituting pathogenicity and host range determinants.About:
This article is published in Current Opinion in Plant Biology.The article was published on 2011-08-01. It has received 98 citations till now. The article focuses on the topics: Pathogenomics.read more
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Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses
Richard J. O'Connell,Michael R. Thon,Stéphane Hacquard,Stefan G. Amyotte,Jochen Kleemann,Maria F. Torres,Ulrike Damm,Ester Alvarenga Santos Buiate,Lynn Epstein,Noam Alkan,Janine Altmüller,Lucia Alvarado-Balderrama,Christopher Bauser,Christian Becker,Bruce W. Birren,Zehua Chen,Jaeyoung Choi,Jo Anne Crouch,Jonathan P. Duvick,Jonathan P. Duvick,Mark A. Farman,Pamela Gan,David I. Heiman,Bernard Henrissat,Richard J. Howard,Mehdi Kabbage,Christian Koch,Barbara Kracher,Yasuyuki Kubo,Audrey D. Law,Marc-Henri Lebrun,Yong-Hwan Lee,Itay Miyara,Neil Moore,Ulla Neumann,Karl Nordström,Daniel G. Panaccione,Ralph Panstruga,Ralph Panstruga,Michael Place,Robert H. Proctor,Dov Prusky,Gabriel E. Rech,Richard Reinhardt,Jeffrey A. Rollins,Steve Rounsley,Christopher L. Schardl,David C. Schwartz,Narmada Shenoy,Ken Shirasu,Usha Rani Sikhakolli,Kurt Stüber,Serenella A. Sukno,James A. Sweigard,Yoshitaka Takano,Hiroyuki Takahara,Hiroyuki Takahara,Frances Trail,H. Charlotte van der Does,H. Charlotte van der Does,Lars M. Voll,Isa Will,Sarah Young,Qiandong Zeng,Jingze Zhang,Shiguo Zhou,Martin B. Dickman,Paul Schulze-Lefert,Emiel Ver Loren van Themaat,Li-Jun Ma,Li-Jun Ma,Lisa J. Vaillancourt +71 more
TL;DR: Findings show that preinvasion perception of plant-derived signals substantially reprograms fungal gene expression and indicate previously unknown functions for particular fungal cell types.
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Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica
Alga Zuccaro,Urs Lahrmann,Ulrich Güldener,Gregor Langen,Stefanie Pfiffi,Dagmar Biedenkopf,Philip C. Wong,Birgit Samans,Carolin Grimm,Magdalena Basiewicz,Claude Murat,Francis Martin,Karl-Heinz Kogel +12 more
TL;DR: The findings provide a significant advance in understanding development of biotrophic plant symbionts and suggest a series of incremental shifts along the continuum from saprotrophy towards biotrophy in the evolution of mycorrhizal association from decomposer fungi.
Journal Article
The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion
TL;DR: In this article, the authors analyzed the most extensively studied member of this complex, Nectria haematococca mating population VI (MPVI), and revealed that several genes controlling the ability of individual isolates of this species to colonize specific habitats are located on supernumerary chromosomes.
Journal ArticleDOI
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry
Pierre J. G. M. de Wit,Ate van der Burgt,Bilal Ökmen,Ioannis Stergiopoulos,Ioannis Stergiopoulos,Kamel A. Abd-Elsalam,Andrea Aerts,Ali H. Bahkali,Henriek G. Beenen,Pranav Chettri,Murray P. Cox,Erwin Datema,Ronald P. de Vries,Braham Dhillon,Austen R. D. Ganley,Scott A. Griffiths,Yanan Guo,Richard C. Hamelin,Bernard Henrissat,M. Shahjahan Kabir,Mansoor Karimi Jashni,Mansoor Karimi Jashni,Gert H. J. Kema,Sylvia Klaubauf,Alla Lapidus,Alla Lapidus,Anthony Levasseur,Erika Lindquist,Rahim Mehrabi,Robin A. Ohm,Timothy J. Owen,Timothy J. Owen,Asaf Salamov,Arne Schwelm,Arne Schwelm,Elio Schijlen,Hui Sun,Harrold A. van den Burg,Harrold A. van den Burg,Roeland C. H. J. van Ham,Shuguang Zhang,Shuguang Zhang,Stephen B. Goodwin,Igor V. Grigoriev,Jérôme Collemare,Rosie E. Bradshaw +45 more
TL;DR: Comparison of the genomes of the Dothideomycete fungal plant pathogens suggests that these closely related plant pathogens had a common ancestral host but since adapted to different hosts and lifestyles by a combination of differentiated gene content, pseudogenization, and gene regulation.
Journal ArticleDOI
On the trail of a cereal killer: recent advances in Fusarium graminearum pathogenomics and host resistance
TL;DR: In the last few years, significant progress has been made towards a better understanding of the processes involved in F. graminearum pathogenesis, toxin biosynthesis and host resistance mechanisms through the use of high-throughput genomic and phenomic technologies.
References
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Genome sequence of the human malaria parasite Plasmodium falciparum
Malcolm J. Gardner,Neil Hall,Eula Fung,Owen White,Matthew Berriman,Richard W. Hyman,Jane M. Carlton,Arnab Pain,Karen E. Nelson,Sharen Bowman,Ian T. Paulsen,Keith D. James,Jonathan A. Eisen,Kim Rutherford,Steven L. Salzberg,Alister Craig,Sue Kyes,Man Suen Chan,Vishvanath Nene,Shamira J. Shallom,Bernard B. Suh,Jeremy Peterson,Samuel V. Angiuoli,Mihaela Pertea,Jonathan E. Allen,Jeremy D. Selengut,Daniel H. Haft,Michael W. Mather,Akhil B. Vaidya,David M. A. Martin,Alan H. Fairlamb,Martin Fraunholz,David S. Roos,Stuart A. Ralph,Geoffrey I. McFadden,Leda M. Cummings,G. Mani Subramanian,Christopher J. Mungall,J. Craig Venter,Daniel J. Carucci,Stephen L. Hoffman,Chris I. Newbold,Ronald W. Davis,Claire M. Fraser,Bart Barrell +44 more
TL;DR: The genome sequence of P. falciparum clone 3D7 is reported, which is the most (A + T)-rich genome sequenced to date and is being exploited in the search for new drugs and vaccines to fight malaria.
Journal ArticleDOI
The genome sequence of the rice blast fungus Magnaporthe grisea
Ralph A. Dean,Nicholas J. Talbot,Daniel J. Ebbole,Mark L. Farman,Thomas K. Mitchell,Marc J. Orbach,Michael R. Thon,Resham Kulkarni,Resham Kulkarni,Jin-Rong Xu,Huaqin Pan,Nick D. Read,Yong-Hwan Lee,Ignazio Carbone,Doug Brown,Yeonyee Oh,Nicole M. Donofrio,Jun Seop Jeong,Darren M. Soanes,Slavica Djonovic,Elena A. Kolomiets,Cathryn J. Rehmeyer,Weixi Li,Michael W. Harding,Soonok Kim,Marc-Henri Lebrun,Heidi U. Böhnert,Sean J. Coughlan,Jonathan Butler,Sarah E. Calvo,Li-Jun Ma,Robert Nicol,Seth Purcell,Chad Nusbaum,James E. Galagan,Bruce W. Birren +35 more
TL;DR: The draft sequence of the M. grisea genome is reported, reflecting the clonal nature of this fungus imposed by widespread rice cultivation and analysis of the gene set provides an insight into the adaptations required by a fungus to cause disease.
Journal ArticleDOI
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
Li-Jun Ma,H. Charlotte van der Does,Katherine A. Borkovich,Jeffrey J. Coleman,Marie Josée Daboussi,Antonio Di Pietro,Marie Dufresne,Michael Freitag,Manfred Grabherr,Bernard Henrissat,Petra M. Houterman,Seogchan Kang,Won-Bo Shim,Charles P. Woloshuk,Xiaohui Xie,Jin-Rong Xu,John F. Antoniw,Scott E. Baker,B. H. Bluhm,Andrew Breakspear,Daren W. Brown,Robert A. E. Butchko,Sinéad B. Chapman,Richard M.R. Coulson,Pedro M. Coutinho,Etienne Danchin,Etienne Danchin,Andrew C. Diener,Liane R. Gale,Donald M. Gardiner,Stephen A. Goff,Kim E. Hammond-Kosack,Karen Hilburn,Aurélie Hua-Van,Wilfried Jonkers,Kemal Kazan,Chinnappa D. Kodira,Michael Koehrsen,Lokesh Kumar,Yong-Hwan Lee,Liande Li,Liande Li,John M. Manners,Diego Miranda-Saavedra,Mala Mukherjee,Gyungsoon Park,Jongsun Park,Sook Young Park,Sook Young Park,Robert H. Proctor,Aviv Regev,M. Carmen Ruiz-Roldán,Divya Sain,Sharadha Sakthikumar,Sean M. Sykes,David C. Schwartz,B. Gillian Turgeon,Ilan Wapinski,Olen C. Yoder,Sarah Young,Qiandong Zeng,Shiguo Zhou,James E. Galagan,Christina A. Cuomo,H. Corby Kistler,Martijn Rep +65 more
TL;DR: Comparison of genomes of three phenotypically diverse Fusarium species revealed lineage-specific genomic regions in F. oxysporum that include four entire chromosomes and account for more than one-quarter of the genome, putting the evolution of fungal pathogenicity into a new perspective.
Journal ArticleDOI
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans.
Brian J. Haas,Sophien Kamoun,Sophien Kamoun,Michael C. Zody,Michael C. Zody,Rays H. Y. Jiang,Rays H. Y. Jiang,Robert E. Handsaker,Liliana M. Cano,Manfred Grabherr,Chinnappa D. Kodira,Chinnappa D. Kodira,Sylvain Raffaele,Trudy Torto-Alalibo,Trudy Torto-Alalibo,Tolga O. Bozkurt,Audrey M. V. Ah-Fong,Lucia Alvarado,Vicky L. Anderson,Miles R. Armstrong,Anna O. Avrova,Laura Baxter,Jim Beynon,Petra C. Boevink,Stephanie R. Bollmann,Jorunn I. B. Bos,Vincent Bulone,Guohong Cai,Cahid Cakir,James C. Carrington,Megan Chawner,Lucio Conti,Stefano Costanzo,Richard Ewan,Noah Fahlgren,Michael A. Fischbach,Johanna Fugelstad,Eleanor M. Gilroy,Sante Gnerre,Pamela J. Green,Laura J. Grenville-Briggs,John Griffith,Niklaus J. Grünwald,Karolyn Horn,Neil R. Horner,Chia-Hui Hu,Edgar Huitema,Dong-Hoon Jeong,Alexandra M. E. Jones,Jonathan D. G. Jones,Richard W. Jones,Elinor K. Karlsson,Sridhara G. Kunjeti,Kurt Lamour,Zhenyu Liu,Li-Jun Ma,Dan MacLean,Marcus C. Chibucos,Hayes McDonald,Jessica McWalters,Harold J. G. Meijer,William Morgan,Paul Morris,Carol A. Munro,Keith O'Neill,Keith O'Neill,Manuel D. Ospina-Giraldo,Andrés Pinzón,Leighton Pritchard,Bernard H Ramsahoye,Qinghu Ren,Silvia Restrepo,Sourav Roy,Ari Sadanandom,Alon Savidor,Sebastian Schornack,David C. Schwartz,Ulrike Schumann,Ben Schwessinger,Lauren Seyer,Ted Sharpe,Cristina Silvar,Jing Song,David J. Studholme,Sean M. Sykes,Marco Thines,Marco Thines,Peter J. I. van de Vondervoort,Vipaporn Phuntumart,Stephan Wawra,R. Weide,Joe Win,Carolyn A. Young,Shiguo Zhou,William E. Fry,Blake C. Meyers,Pieter van West,Jean B. Ristaino,Francine Govers,Paul R. J. Birch,Stephen C. Whisson,Howard S. Judelson,Chad Nusbaum +102 more
TL;DR: The sequence of the P. infestans genome is reported, which at ∼240 megabases (Mb) is by far the largest and most complex genome sequenced so far in the chromalveolates and probably plays a crucial part in the rapid adaptability of the pathogen to host plants and underpins its evolutionary potential.
Journal ArticleDOI
Sugar transporters for intercellular exchange and nutrition of pathogens
Li Qing Chen,Bi Huei Hou,Sylvie Lalonde,Hitomi Takanaga,Mara L. Hartung,Xiao Qing Qu,Woei Jiun Guo,Jung Gun Kim,William Underwood,Bhavna Chaudhuri,Diane Chermak,Ginny Antony,Frank F. White,Shauna Somerville,Mary Beth Mudgett,Wolf B. Frommer +15 more
TL;DR: Using optical glucose sensors, a new class of sugar transporters are identified, named SWEETs, and it is shown that at least six out of seventeen Arabidopsis, two out of over twenty rice and two of seven homologues in Caenorhabditis elegans, and the single copy human protein, mediate glucose transport.
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