Estimating genetic kin relationships in prehistoric populations.
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TLDR
A group of five closely related males from the same Corded Ware culture site in modern-day Germany is found, suggesting patrilocality, which highlights the possibility to uncover social structures of ancient populations by applying READ to genome-wide aDNA data.Abstract:
Archaeogenomic research has proven to be a valuable tool to trace migrations of historic and prehistoric individuals and groups, whereas relationships within a group or burial site have not been in ...read more
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Ancient human genomes suggest three ancestral populations for present-day Europeans
Iosif Lazaridis,Iosif Lazaridis,Nick Patterson,Alissa Mittnik,Gabriel Renaud,Swapan Mallick,Swapan Mallick,Karola Kirsanow,Peter H. Sudmant,Joshua G. Schraiber,Joshua G. Schraiber,Sergi Castellano,Mark Lipson,Bonnie Berger,Bonnie Berger,Christos Economou,Ruth Bollongino,Qiaomei Fu,Kirsten I. Bos,Susanne Nordenfelt,Susanne Nordenfelt,Heng Li,Heng Li,Cesare de Filippo,Kay Prüfer,Susanna Sawyer,Cosimo Posth,Wolfgang Haak,Fredrik Hallgren,Elin Fornander,Nadin Rohland,Nadin Rohland,Dominique Delsate,Michael Francken,Jean-Michel Guinet,Joachim Wahl,George Ayodo,Hamza A. Babiker,Hamza A. Babiker,Graciela Bailliet,Elena Balanovska,Oleg Balanovsky,Ramiro Barrantes,Gabriel Bedoya,Haim Ben-Ami,Judit Bene,Fouad Berrada,Claudio M. Bravi,Francesca Brisighelli,George B.J. Busby,Francesco Calì,Mikhail Churnosov,David E. C. Cole,Daniel Corach,Larissa Damba,George van Driem,Stanislav Dryomov,Jean-Michel Dugoujon,Sardana A. Fedorova,Irene Gallego Romero,Marina Gubina,Michael F. Hammer,Brenna M. Henn,Tor Hervig,Ugur Hodoglugil,Aashish R. Jha,Sena Karachanak-Yankova,Rita Khusainova,Elza Khusnutdinova,Rick A. Kittles,Toomas Kivisild,William Klitz,Vaidutis Kučinskas,Alena Kushniarevich,Leila Laredj,Sergey Litvinov,Theologos Loukidis,Theologos Loukidis,Robert W. Mahley,Béla Melegh,Ene Metspalu,Julio Molina,Joanna L. Mountain,Klemetti Näkkäläjärvi,Desislava Nesheva,Thomas B. Nyambo,Ludmila P. Osipova,Jüri Parik,Fedor Platonov,Olga L. Posukh,Valentino Romano,Francisco Rothhammer,Francisco Rothhammer,Igor Rudan,Ruslan Ruizbakiev,Hovhannes Sahakyan,Hovhannes Sahakyan,Antti Sajantila,Antonio Salas,Elena B. Starikovskaya,Ayele Tarekegn,Draga Toncheva,Shahlo Turdikulova,Ingrida Uktveryte,Olga Utevska,René Vasquez,Mercedes Villena,Mikhail Voevoda,Cheryl A. Winkler,Levon Yepiskoposyan,Pierre Zalloua,Pierre Zalloua,Tatijana Zemunik,Alan Cooper,Cristian Capelli,Mark G. Thomas,Andres Ruiz-Linares,Sarah A. Tishkoff,Lalji Singh,Kumarasamy Thangaraj,Richard Villems,Richard Villems,Richard Villems,David Comas,Rem I. Sukernik,Mait Metspalu,Matthias Meyer,Evan E. Eichler,Joachim Burger,Montgomery Slatkin,Svante Pääbo,Janet Kelso,David Reich,David Reich,David Reich,Johannes Krause,Johannes Krause +136 more
TL;DR: The authors showed that most present-day Europeans derive from at least three highly differentiated populations: west European hunter-gatherers, ancient north Eurasians related to Upper Palaeolithic Siberians, who contributed to both Europeans and Near Easterners; and early European farmers, who were mainly of Near Eastern origin but also harboured west European hunters-gatherer related ancestry.
Journal ArticleDOI
The genomic history of the Iberian Peninsula over the past 8000 years.
Iñigo Olalde,Swapan Mallick,Swapan Mallick,Swapan Mallick,Nick Patterson,Nadin Rohland,Vanessa Villalba-Mouco,Vanessa Villalba-Mouco,Marina Silva,Katharina Dulias,Ceiridwen J. Edwards,Francesca Gandini,Maria Pala,Pedro Soares,Manuel Ferrando-Bernal,Nicole Adamski,Nicole Adamski,Nasreen Broomandkhoshbacht,Nasreen Broomandkhoshbacht,Olivia Cheronet,Brendan J. Culleton,Daniel Fernandes,Daniel Fernandes,Ann Marie Lawson,Ann Marie Lawson,Matthew Mah,Matthew Mah,Matthew Mah,Jonas Oppenheimer,Jonas Oppenheimer,Kristin Stewardson,Kristin Stewardson,Zhao Zhang,Juan Manuel Jiménez Arenas,Juan Manuel Jiménez Arenas,Isidro Jorge Toro Moyano,Domingo C. Salazar-García,Pere Castanyer,Marta Santos,Joaquim Tremoleda,Marina Lozano,Pablo García Borja,Javier Fernández-Eraso,José Antonio Mujika-Alustiza,Cecilio Barroso,Francisco J. Bermúdez,Enrique Viguera Mínguez,Josep Burch,Neus Coromina,David Vivó,Artur Cebrià,Josep Maria Fullola,Oreto García-Puchol,Juan Ignacio Morales,F. Xavier Oms,Tona Majó,Josep Maria Vergès,Antonia Díaz-Carvajal,Imma Ollich-Castanyer,F. Javier López-Cachero,Ana Maria Silva,Ana Maria Silva,Carmen Alonso-Fernández,Germán Delibes de Castro,Javier Jiménez Echevarría,Adolfo Moreno-Márquez,Adolfo Moreno-Márquez,Guillermo Pascual Berlanga,Pablo Ramos-García,José Ramos-Muñoz,Eduardo Vijande Vila,Gustau Aguilella Arzo,Ángel Esparza Arroyo,Katina T. Lillios,Jennifer E. Mack,Javier Velasco-Vázquez,Anna J. Waterman,Luis Benítez de Lugo Enrich,Luis Benítez de Lugo Enrich,María Benito Sánchez,Bibiana Agustí,Ferran Codina,Gabriel de Prado,Almudena Estalrrich,Álvaro Fernández Flores,Clive Finlayson,Geraldine Finlayson,Geraldine Finlayson,Stewart Finlayson,Stewart Finlayson,Francisco Giles-Guzmán,Antonio Rosas,Virginia Barciela González,Gabriel García Atiénzar,Mauro S. Hernández Pérez,Armando Llanos,Yolanda Carrión Marco,Isabel Collado Beneyto,David López-Serrano,Mario Sanz Tormo,António Carlos Valera,Concepción Blasco,Corina Liesau,Patricia Ríos,Joan Daura,María Jesús de Pedro Michó,Agustín Diez Castillo,Raúl Flores Fernández,Raúl Flores Fernández,Joan Francès Farré,Rafael Garrido-Pena,Victor S. Gonçalves,Elisa Guerra-Doce,Ana Mercedes Herrero-Corral,Joaquim Juan-Cabanilles,Daniel López-Reyes,Sarah B. McClure,Marta Pérez,Arturo Oliver Foix,Montserrat Sanz Borràs,Ana Catarina Sousa,Julio Manuel Vidal Encinas,Douglas J. Kennett,Douglas J. Kennett,Martin B. Richards,Kurt W. Alt,Kurt W. Alt,Wolfgang Haak,Wolfgang Haak,Ron Pinhasi,Carles Lalueza-Fox,David Reich,David Reich,David Reich +133 more
TL;DR: It is revealed that present-day Basques are best described as a typical Iron Age population without the admixture events that later affected the rest of Iberia, and how the ancestry of the peninsula was transformed by gene flow from North Africa and the eastern Mediterranean is document.
Journal ArticleDOI
Genomic insights into the formation of human populations in East Asia
Chuan-Chao Wang,Hui-Yuan Yeh,Alexander N. Popov,Hu Qin Zhang,Hirofumi Matsumura,Kendra Sirak,Olivia Cheronet,Alexey A. Kovalev,Nadin Rohland,Alexander M. Kim,Swapan Mallick,Swapan Mallick,Rebecca Bernardos,Dashtseveg Tumen,Jing Zhao,Yi Chang Liu,Jiun Yu Liu,Matthew Mah,Matthew Mah,Ke Wang,Zhao Zhang,Nicole Adamski,Nasreen Broomandkhoshbacht,Kimberly Callan,Francesca Candilio,Kellie Sara Duffett Carlson,Brendan J. Culleton,Laurie Eccles,Suzanne Freilich,Denise Keating,Ann Marie Lawson,Kirsten Mandl,Megan Michel,Jonas Oppenheimer,Kadir T. Özdoğan,Kristin Stewardson,Shao-Qing Wen,Shi Yan,Fatma Zalzala,Richard Chuang,Ching Jung Huang,Hana Looh,Chung Ching Shiung,Yuri G. Nikitin,Andrei V. Tabarev,Alexey A. Tishkin,Song Lin,Zhou Yong Sun,Xiao Ming Wu,Tie-Lin Yang,Xi Hu,Liang Chen,Hua Du,Jamsranjav Bayarsaikhan,Enkhbayar Mijiddorj,Diimaajav Erdenebaatar,Tumur Ochir Iderkhangai,Erdene Myagmar,Hideaki Kanzawa-Kiriyama,Masato Nishino,Ken ichi Shinoda,Olga A. Shubina,Jianxin Guo,Wangwei Cai,Qiongying Deng,Longli Kang,Dawei Li,Dongna Li,Rong Lin,Nini,Rukesh Shrestha,Ling Xiang Wang,Lan-Hai Wei,Guangmao Xie,Hong-Bing Yao,Manfei Zhang,Guanglin He,Xiaomin Yang,Rong Hu,Martine Robbeets,Stephan Schiffels,Douglas J. Kennett,Li Jin,Hui Li,Johannes Krause,Ron Pinhasi,David Reich,David Reich +87 more
TL;DR: In this paper, the authors report genome-wide data from 166 East Asian individuals dating to between 6000 and 1000 BC and 46 present-day groups, showing that hunter-gatherers from Japan, the Amur River Basin, and people of Neolithic and Iron Age Taiwan and the Tibetan Plateau are linked by a deeply splitting lineage that probably reflects a coastal migration during the Late Pleistocene epoch.
Journal ArticleDOI
Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation.
Torsten Günther,Helena Malmström,Emma M. Svensson,Ayça Omrak,Federico Sánchez-Quinto,Gülşah Merve Kılınç,Gülşah Merve Kılınç,Gülşah Merve Kılınç,Maja Krzewińska,Gunilla Eriksson,Magdalena Fraser,Hanna Edlund,Arielle R. Munters,Alexandra Coutinho,Luciana G. Simões,Mário Vicente,Anders Sjölander,Berit J. Sellevold,Roger Jørgensen,Peter Claes,Mark D. Shriver,Cristina Valdiosera,Mihai G. Netea,Jan Apel,Kerstin Lidén,Kerstin Lidén,Birgitte Skar,Jan Storå,Anders Götherström,Mattias Jakobsson +29 more
TL;DR: The authors' results suggest two different early postglacial migrations into Scandinavia: initially from the south, and later, from the northeast, which followed the ice-free Norwegian north Atlantic coast, along which novel and advanced pressure-blade stone-tool techniques may have spread.
Journal ArticleDOI
The genetic prehistory of the Baltic Sea region
Alissa Mittnik,Alissa Mittnik,Chuan-Chao Wang,Chuan-Chao Wang,Saskia Pfrengle,Mantas Daubaras,Gunita Zariņa,Fredrik Hallgren,Raili Allmäe,Valery Khartanovich,Vyacheslav Moiseyev,Mari Tõrv,Anja Furtwängler,Aida Andrades Valtueña,Michal Feldman,Christos Economou,Markku Oinonen,Andrejs Vasks,Elena Balanovska,David Reich,David Reich,David Reich,Rimantas Jankauskas,Wolfgang Haak,Wolfgang Haak,Stephan Schiffels,Johannes Krause,Johannes Krause +27 more
TL;DR: In this paper, the authors report genome-wide DNA data from 38 ancient North Europeans ranging from ~9500 to 2200 years before present, and reveal that the first Scandinavian farmers derive their ancestry from Anatolia 1000 years earlier than previously demonstrated.
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TL;DR: The 1000 Genomes Project set out to provide a comprehensive description of common human genetic variation by applying whole-genome sequencing to a diverse set of individuals from multiple populations, and has reconstructed the genomes of 2,504 individuals from 26 populations using a combination of low-coverage whole-generation sequencing, deep exome sequencing, and dense microarray genotyping.
Journal ArticleDOI
The variant call format and VCFtools
Petr Danecek,Adam Auton,Gonçalo R. Abecasis,Cornelis A. Albers,Eric Banks,Mark A. DePristo,Robert E. Handsaker,Gerton Lunter,Gabor T. Marth,Stephen T. Sherry,Gilean McVean,Richard Durbin +11 more
TL;DR: VCFtools is a software suite that implements various utilities for processing VCF files, including validation, merging, comparing and also provides a general Perl API.
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