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Open AccessJournal ArticleDOI

Identification of Genetic Susceptibility Loci for Colorectal Tumors in a Genome-Wide Meta-analysis

Ulrike Peters, +83 more
- 01 Apr 2013 - 
- Vol. 144, Iss: 4, pp 799-807
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TLDR
In a large genome-wide association study, polymorphisms close to nucleic acid binding protein 1 (which encodes a DNA-binding protein involved in DNA repair) with colorectal tumor risk and polymorphisms in laminin gamma 1, cyclin D2, and T-box 3 are associated.
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This article is published in Gastroenterology.The article was published on 2013-04-01 and is currently open access. It has received 314 citations till now. The article focuses on the topics: Locus (genetics) & Laminin, gamma 1.

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The microbiome and cancer

TL;DR: In this paper, the authors discuss links between the bacterial microbiota and cancer, with a particular focus on immune responses, dysbiosis, genotoxicity, metabolism and strategies to target the microbiome for cancer prevention.
Journal Article

Normal and tumor-derived myoepithelial cells differ in their ability to interact withluminal breast epithelial cells for polarity and basement membrane deposition

TL;DR: Gudjonsson et al. as discussed by the authors showed that normal and tumor-derived myoepithelial cells differ in their ability to interact with luminal breast epithelial cells for polarity and basement membrane deposition.
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Genetic Mechanisms of Immune Evasion in Colorectal Cancer

TL;DR: This large-scale genomic analysis of colorectal cancer demonstrates that MSI-high cases frequently undergo an immunoediting process that provides them with genetic events allowing immune escape despite high mutational load and frequent lymphocytic infiltration and, furthermore, that coloreCTal cancer tumors have genetic and methylation events associated with activated WNT signaling and T-cell exclusion.
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Genetics and Genetic Biomarkers in Sporadic Colorectal Cancer.

TL;DR: Sporadic colorectal cancer (CRC) is a somatic genetic disease in which pathogenesis is influenced by the local colonic environment and the patient's genetic background as mentioned in this paper.
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Discovery of common and rare genetic risk variants for colorectal cancer

Jeroen R. Huyghe, +224 more
- 01 Jan 2019 - 
TL;DR: Genome-wide association analyses based on whole-genome sequencing and imputation identify 40 new risk variants for colorectal cancer, including a strongly protective low-frequency variant at CHD1 and loci implicating signaling and immune function in disease etiology.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

TL;DR: This work introduces PLINK, an open-source C/C++ WGAS tool set, and describes the five main domains of function: data management, summary statistics, population stratification, association analysis, and identity-by-descent estimation, which focuses on the estimation and use of identity- by-state and identity/descent information in the context of population-based whole-genome studies.
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The Human Genome Browser at UCSC

TL;DR: A mature web tool for rapid and reliable display of any requested portion of the genome at any scale, together with several dozen aligned annotation tracks, is provided at http://genome.ucsc.edu.
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Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

Paul Burton, +195 more
- 07 Jun 2007 - 
TL;DR: This study has demonstrated that careful use of a shared control group represents a safe and effective approach to GWA analyses of multiple disease phenotypes; generated a genome-wide genotype database for future studies of common diseases in the British population; and shown that, provided individuals with non-European ancestry are excluded, the extent of population stratification in theBritish population is generally modest.
Journal ArticleDOI

GCTA: a tool for genome-wide complex trait analysis.

TL;DR: The GCTA software is a versatile tool to estimate and partition complex trait variation with large GWAS data sets and focuses on the function of estimating the variance explained by all the SNPs on the X chromosome and testing the hypotheses of dosage compensation.
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Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.

A genome-wide association study identifies colorectal cancer susceptibility loci on chromosomes 10p14 and 8q23.3

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- 01 May 2008 - 
Frequently Asked Questions (1)
Q1. What are the contributions mentioned in the paper "Identification of genetic susceptibility loci for colorectal tumors in a genome-wide meta-analysis" ?

METHODS—We conducted a genome-wide association study that included 14 studies, 12,696 cases of colorectal tumors ( 11,870 cancer, 826 adenoma ), and 15,113 controls of European descent. The 10 most statistically significant, previously unreported findings were followed up in 6 studies ; these included 3056 colorectal tumor cases ( 2098 cancer, 958 adenoma ) and 6658 controls of European and Asian descent. In a large genome-wide association study, the authors associated polymorphisms close to nucleic acid binding protein 1 ( which encodes a DNA-binding protein involved in DNA repair ) with colorectal tumor risk. The authors also provided evidence for an association between colorectal tumor risk and polymorphisms in laminin gamma 1 ( this is the second gene in the Peters et al. RESULTS—Based on the combined analysis, the authors identified a locus that reached the conventional genome-wide significance level at less than 5. The roles of these genes and their products in cancer pathogenesis warrant further investigation.