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Showing papers by "University of Wisconsin–Milwaukee published in 2014"


Journal ArticleDOI
Jacy R Crosby1, Gina M. Peloso2, Gina M. Peloso3, Paul L. Auer4, David R. Crosslin5, Nathan O. Stitziel6, Leslie A. Lange7, Yingchang Lu8, Zheng-Zheng Tang7, He Zhang9, George Hindy10, Nicholas G. D. Masca11, Kathleen Stirrups12, Stavroula Kanoni12, Ron Do2, Ron Do3, Goo Jun9, Youna Hu9, Hyun Min Kang9, Chenyi Xue9, Anuj Goel13, Martin Farrall13, Stefano Duga14, Pier Angelica Merlini, Rosanna Asselta14, Domenico Girelli15, Oliviero Olivieri15, Nicola Martinelli15, Wu Yin16, Dermot F. Reilly16, Elizabeth K. Speliotes9, Caroline S. Fox17, Kristian Hveem18, Oddgeir L. Holmen19, Majid Nikpay20, Deborah N. Farlow2, Themistocles L. Assimes21, Nora Franceschini7, Jennifer G. Robinson22, Kari E. North7, Lisa W. Martin23, Mark A. DePristo2, Namrata Gupta2, Stefan A. Escher10, Jan-Håkan Jansson24, Natalie R. van Zuydam25, Colin N. A. Palmer25, Nicholas J. Wareham26, Werner Koch27, Thomas Meitinger27, Annette Peters, Wolfgang Lieb28, Raimund Erbel, Inke R. König29, Jochen Kruppa29, Franziska Degenhardt30, Omri Gottesman8, Erwin P. Bottinger8, Christopher J. O'Donnell17, Bruce M. Psaty31, Bruce M. Psaty5, Christie M. Ballantyne32, Christie M. Ballantyne33, Gonçalo R. Abecasis9, Jose M. Ordovas34, Jose M. Ordovas35, Olle Melander10, Hugh Watkins13, Marju Orho-Melander10, Diego Ardissino, Ruth J. F. Loos8, Ruth McPherson20, Cristen J. Willer9, Jeanette Erdmann29, Alistair S. Hall36, Nilesh J. Samani11, Panos Deloukas12, Panos Deloukas37, Panos Deloukas38, Heribert Schunkert27, James G. Wilson39, Charles Kooperberg40, Stephen S. Rich41, Russell P. Tracy42, Danyu Lin7, David Altshuler3, David Altshuler2, Stacey Gabriel2, Deborah A. Nickerson5, Gail P. Jarvik5, L. Adrienne Cupples43, L. Adrienne Cupples26, Alexander P. Reiner40, Alexander P. Reiner5, Eric Boerwinkle33, Sekar Kathiresan2, Sekar Kathiresan3 
TL;DR: Rare mutations that disrupt AP OC3 function were associated with lower levels of plasma triglycerides and APOC3, and carriers of these mutations were found to have a reduced risk of coronary heart disease.
Abstract: Background Plasma triglyceride levels are heritable and are correlated with the risk of coronary heart disease. Sequencing of the protein-coding regions of the human genome (the exome) has the potential to identify rare mutations that have a large effect on phenotype. Methods We sequenced the protein-coding regions of 18,666 genes in each of 3734 participants of European or African ancestry in the Exome Sequencing Project. We conducted tests to determine whether rare mutations in coding sequence, individually or in aggregate within a gene, were associated with plasma triglyceride levels. For mutations associated with triglyceride levels, we subsequently evaluated their association with the risk of coronary heart disease in 110,970 persons. Results An aggregate of rare mutations in the gene encoding apolipoprotein C3 (APOC3) was associated with lower plasma triglyceride levels. Among the four mutations that drove this result, three were loss-of-function mutations: a nonsense mutation (R19X) and two splice-site mutations (IVS2+1G→A and IVS3+1G→T). The fourth was a missense mutation (A43T). Approximately 1 in 150 persons in the study was a heterozygous carrier of at least one of these four mutations. Triglyceride levels in the carriers were 39% lower than levels in noncarriers (P<1×10 − 20 ), and circulating levels of APOC3 in carriers were 46% lower than levels in noncarriers (P = 8×10 − 10 ). The risk of coronary heart disease among 498 carriers of any rare APOC3 mutation was 40% lower than the risk among 110,472 noncarriers (odds ratio, 0.60; 95% confidence interval, 0.47 to 0.75; P = 4×10 − 6 ). Conclusions Rare mutations that disrupt APOC3 function were associated with lower levels of plasma triglycerides and APOC3. Carriers of these mutations were found to have a reduced risk of coronary heart disease. (Funded by the National Heart, Lung, and Blood Institute and others.)

877 citations


Journal ArticleDOI
TL;DR: In this article, the authors present initial results of a deep near-IR spectroscopic survey covering the 15 fields of the Keck Baryonic Structure Survey using the recently commissioned MOSFIRE spectrometer.
Abstract: We present initial results of a deep near-IR spectroscopic survey covering the 15 fields of the Keck Baryonic Structure Survey using the recently commissioned MOSFIRE spectrometer on the Keck 1 telescope. We focus on a sample of 251 galaxies with redshifts 2.0 < z < 2.6, star formation rates (SFRs) 2 ≾ SFR ≾ 200 M_☉ yr^(–1), and stellar masses 8.6 < log (M_*/M_☉) < 11.4, with high-quality spectra in both H- and K-band atmospheric windows. We show unambiguously that the locus of z ~ 2.3 galaxies in the "BPT" nebular diagnostic diagram exhibits an almost entirely disjointed, yet similarly tight, relationship between the line ratios [N II] λ6585/Hα and [O III]/Hβ as compared to local galaxies. Using photoionization models, we argue that the offset of the z ~ 2.3 BPT locus relative to that at z ~ 0 is caused by a combination of harder stellar ionizing radiation field, higher ionization parameter, and higher N/O at a given O/H compared to most local galaxies, and that the position of a galaxy along the z ~ 2.3 star-forming BPT locus is surprisingly insensitive to gas-phase oxygen abundance. The observed nebular emission line ratios are most easily reproduced by models in which the net stellar ionizing radiation field resembles a blackbody with effective temperature T_(eff) = 50, 000-60, 000 K, the gas-phase oxygen abundances lie in the range 0.2 < Z/Z_☉ < 1.0, and the ratio of gas-phase N/O is close to the solar value. We critically assess the applicability at high redshift of commonly used strong line indices for estimating gas-phase metallicity, and consider the implications of the small intrinsic scatter of the empirical relationship between excitation-sensitive line indices and M_* (i.e., the "mass-metallicity" relation) at z ≃ 2.3.

657 citations


Journal ArticleDOI
TL;DR: In this article, the authors present a wide-field interferometric imager that uses the w-stacking algorithm and can make use of the W-snapshot algorithm, which is an order of magnitude faster than w-projection, as well as being capable of full-sky imaging at full resolution with correct polarization correction.
Abstract: Astronomical wide-field imaging of interferometric radio data is computationally expensive, especially for the large data volumes created by modern non-coplanar many-element arrays. We present a new wide-field interferometric imager that uses the w-stacking algorithm and can make use of the w-snapshot algorithm. The performance dependences of CASA's w-projection and our new imager are analysed and analytical functions are derived that describe the required computing cost for both imagers. On data from the Murchison Widefield Array, we find our new method to be an order of magnitude faster than w-projection, as well as being capable of full-sky imaging at full resolution and with correct polarization correction. We predict the computing costs for several other arrays and estimate that our imager is a factor of 2-12 faster, depending on the array configuration. We estimate the computing cost for imaging the lowfrequency Square Kilometre Array observations to be 60 PetaFLOPS with current techniques. We find that combining w-stacking with the w-snapshot algorithm does not significantly improve computing requirements over pure w-stacking. The source code of our new imager is publicly released.

576 citations


Journal ArticleDOI
TL;DR: In this paper, the authors presented FRB 121102, the first FRB discovery from a geographic location other than Parkes, which was found in the Galactic anti-center region in the 1.4?GHz Pulsar Arecibo L-band Feed Array (ALFA) survey with a DM = 557.4? 2.0 pc cm?3, pulse width of 3.0? 0.5 ms, and no evidence of interstellar scattering.
Abstract: Recent work has exploited pulsar survey data to identify temporally isolated, millisecond-duration radio bursts with large dispersion measures (DMs). These bursts have been interpreted as arising from a population of extragalactic sources, in which case they would provide unprecedented opportunities for probing the intergalactic medium; they may also be linked to new source classes. Until now, however, all so-called fast radio bursts (FRBs) have been detected with the Parkes radio telescope and its 13-beam receiver, casting some concern about the astrophysical nature of these signals. Here we present FRB 121102, the first FRB discovery from a geographic location other than Parkes. FRB 121102 was found in the Galactic anti-center region in the 1.4?GHz Pulsar Arecibo L-band Feed Array (ALFA) survey with the Arecibo Observatory with a DM = 557.4 ? 2.0 pc cm?3, pulse width of 3.0 ? 0.5 ms, and no evidence of interstellar scattering. The observed delay of the signal arrival time with frequency agrees precisely with the expectation of dispersion through an ionized medium. Despite its low Galactic latitude (b = ?0.?2), the burst has three times the maximum Galactic DM expected along this particular line of sight, suggesting an extragalactic origin. A peculiar aspect of the signal is an inverted spectrum; we interpret this as a consequence of being detected in a sidelobe of the ALFA receiver. FRB 121102's brightness, duration, and the inferred event rate are all consistent with the properties of the previously detected Parkes bursts.

558 citations


Journal ArticleDOI
TL;DR: In this article, a high-performance bi-functional electrocatalyst composed of 3D crumpled graphene (CG) and cobalt oxide nanohybrids was reported.
Abstract: We report a high-performance bi-functional electrocatalyst composed of 3D crumpled graphene (CG)–cobalt oxide nanohybrids. This is the first report on using CG coupled with nanocrystals as both oxygen reduction reaction (ORR) and oxygen evolution reaction (OER) catalysts. The nitrogen-doped CG–CoO hybrid exhibits excellent catalytic activity and durability, making it a high-performance non-precious metal-based bi-functional catalyst for both ORR and OER.

556 citations


Journal ArticleDOI
TL;DR: In this article, the authors present the result of nucleosynthesis calculations based on the fully general relativistic simulation of a binary neutron star (NS-NS) merger with approximate neutrino transport.
Abstract: Recent studies suggest that binary neutron star (NS-NS) mergers robustly produce heavy r-process nuclei above the atomic mass number A ~ 130 because their ejecta consist of almost pure neutrons (electron fraction of Y e < 0.1). However, the production of a small amount of the lighter r-process nuclei (A ≈ 90-120) conflicts with the spectroscopic results of r-process-enhanced Galactic halo stars. We present, for the first time, the result of nucleosynthesis calculations based on the fully general relativistic simulation of a NS-NS merger with approximate neutrino transport. It is found that the bulk of the dynamical ejecta are appreciably shock-heated and neutrino processed, resulting in a wide range of Y e (≈0.09-0.45). The mass-averaged abundance distribution of calculated nucleosynthesis yields is in reasonable agreement with the full-mass range (A ≈ 90-240) of the solar r-process curve. This implies, if our model is representative of such events, that the dynamical ejecta of NS-NS mergers could be the origin of the Galactic r-process nuclei. Our result also shows that radioactive heating after ~1 day from the merging, which gives rise to r-process-powered transient emission, is dominated by the β-decays of several species close to stability with precisely measured half-lives. This implies that the total radioactive heating rate for such an event can be well constrained within about a factor of two if the ejected material has a solar-like r-process pattern.

506 citations


Journal ArticleDOI
TL;DR: In this paper, the fabrication of novel nitrogen-doped coreshell-structured porous porous Fe/Fe 3 C@C nanoboxes supported on RGO sheets by a simple pyrolysis process using graphene oxide (GO) and PB nanocubes as precursors.
Abstract: DOI: 10.1002/aenm.201400337 synthesis of MOFs-derived porous Fe, N-based carbon catalysts supported on NRGO sheets as ORR catalysts. Here, we report the fabrication of novel nitrogen-doped coreshell-structured porous Fe/Fe 3 C@C nanoboxes supported on RGO sheets (N-doped Fe/Fe 3 C@C/RGO) by a simple pyrolysis process using graphene oxide (GO) and PB nanocubes as precursors. Such a unique structure not only offers more active sites from both nitrogen-doped Fe/Fe 3 C@C and NRGO sheets, but also shows enhanced electrical conductivity. As a result, the hybrid exhibits much better electrocatalytic activity, long-term stability, and methanol tolerance ability than the commercial Pt/C catalyst (10% Pt on Vulcan XC-72). The fabrication process for the porous N-doped Fe/Fe 3 C@C/ RGO hybrid is demonstrated in Figure 1 a. Highly uniform PB nanocubes were fi rstly synthesized using a hydrothermal method based on previous reports. [ 9a ] The obtained PB nanocubes were further dispersed in the GO solution (PB/GO) under stirring. The resulting PB/GO powders after drying at 80 °C were then annealed at 800 °C in an argon fl ow to form a core-shell-structured porous N-doped Fe/Fe 3 C@C/RGO hybrid. During this process, the continuous decomposition of PB nanocubes was accompanied by releasing nitrogen-containing gases, [ 11 ] which resulted in the formation of a porous structure accompanied with carbide reactions according to the thermogravimetric analysis (TGA) results (Figure S1, Supporting Information). Simultaneously, the nitrogen-containing species contributed to the reduction of GO and nitrogen doping in both GO and carbon shells, fi nally evolving into nitrogen-doped core-shell-structured porous Fe/Fe 3 C@C/RGO hybrids. The PB nanocubes not only act as templates/precursors, but also provide nitrogen sources for the formation of N-doped Fe/Fe 3 C@C and NRGO. Field-emission scanning electron microscopy (FESEM) images show that uniform PB nanocubes with an edge length of about 500 nm are obtained without any aggregation (Figure 1 b). An enlarged image (inset of Figure 1 b) reveals the very smooth surface over a single box. After the thermal treatment, the PB nanocubes are converted to porous N-doped Fe/Fe 3 C@C nanoboxes with a side length of around 300–400 nm (Figure 1 c). The cubic structure still remained, although its size decreased a little due to the decomposition and shrinkage during the annealing process. [ 12 ] This suggests that the PB nanocubes served as both a template and a self-sacrifi cing precursor for the formation of porous nanoboxes, which are composed of numerous Developing catalytic materials with high activity for oxygen reduction reaction (ORR) is of great signifi cance for commercial fuel cell applications. [ 1 ] Although Pt-based materials are known as the most effi cient ORR catalysts, [ 2 ] they still suffer from several serious problems, including high cost, low abundance, weak durability, crossover effect and CO poisoning; [ 3 ]

503 citations


Journal ArticleDOI
TL;DR: Using in vivo fluorescence measurements, immunolabeling, and quantitative gene expression analysis, it is demonstrated that S. oneidensis MR-1 nanowires are extensions of the outer membrane and periplasm that include the multiheme cytochromes responsible for EET, rather than pilin-based structures as previously thought.
Abstract: Bacterial nanowires offer an extracellular electron transport (EET) pathway for linking the respiratory chain of bacteria to external surfaces, including oxidized metals in the environment and engineered electrodes in renewable energy devices. Despite the global, environmental, and technological consequences of this biotic-abiotic interaction, the composition, physiological relevance, and electron transport mechanisms of bacterial nanowires remain unclear. We report, to our knowledge, the first in vivo observations of the formation and respiratory impact of nanowires in the model metal-reducing microbe Shewanella oneidensis MR-1. Live fluorescence measurements, immunolabeling, and quantitative gene expression analysis point to S. oneidensis MR-1 nanowires as extensions of the outer membrane and periplasm that include the multiheme cytochromes responsible for EET, rather than pilin-based structures as previously thought. These membrane extensions are associated with outer membrane vesicles, structures ubiquitous in Gram-negative bacteria, and are consistent with bacterial nanowires that mediate long-range EET by the previously proposed multistep redox hopping mechanism. Redox-functionalized membrane and vesicular extensions may represent a general microbial strategy for electron transport and energy distribution.

502 citations


Journal ArticleDOI
TL;DR: An array of interfacing abilities of the CLEAR device are demonstrated and its utility for neural applications, including optogenetic activation of focal cortical areas directly beneath electrodes, in vivo imaging of the cortical vasculature via fluorescence microscopy and 3D optical coherence tomography.
Abstract: Neural micro-electrode arrays that are transparent over a broad wavelength spectrum from ultraviolet to infrared could allow for simultaneous electrophysiology and optical imaging, as well as optogenetic modulation of the underlying brain tissue. The long-term biocompatibility and reliability of neural micro-electrodes also require their mechanical flexibility and compliance with soft tissues. Here we present a graphene-based, carbon-layered electrode array (CLEAR) device, which can be implanted on the brain surface in rodents for high-resolution neurophysiological recording. We characterize optical transparency of the device at >90% transmission over the ultraviolet to infrared spectrum and demonstrate its utility through optical interface experiments that use this broad spectrum transparency. These include optogenetic activation of focal cortical areas directly beneath electrodes, in vivo imaging of the cortical vasculature via fluorescence microscopy and 3D optical coherence tomography. This study demonstrates an array of interfacing abilities of the CLEAR device and its utility for neural applications.

459 citations


Journal ArticleDOI
TL;DR: It is shown that a charge current produces a net spin polarization via spin-momentum locking in Bi2Se3 films, and this polarization is directly manifested as a voltage on a ferromagnetic contact.
Abstract: Topological insulators exhibit metallic surface states populated by massless Dirac fermions with spin-momentum locking, where the carrier spin lies in-plane, locked at right angles to the carrier momentum. Here, we show that a charge current produces a net spin polarization via spin-momentum locking in Bi2Se3 films, and this polarization is directly manifested as a voltage on a ferromagnetic contact. This voltage is proportional to the projection of the spin polarization onto the contact magnetization, is determined by the direction and magnitude of the charge current, scales inversely with Bi2Se3 film thickness, and its sign is that expected from spin-momentum locking rather than Rashba effects. Similar data are obtained for two different ferromagnetic contacts, demonstrating that these behaviours are independent of the details of the ferromagnetic contact. These results demonstrate direct electrical access to the topological insulators’ surface-state spin system and enable utilization of its remarkable properties for future technological applications. The spin-momentum locking in a topological insulator can be detected directly through electrical measurements.

417 citations


Journal ArticleDOI
TL;DR: This paper has reviewed the nutrients removal and recovery in various BES including microbial fuel cells and microbial electrolysis cells, discussed the influence factors and potential problems, and identified the key challenges for nitrogen and phosphorus removal/recovery in a BES.

Journal ArticleDOI
TL;DR: Understanding the mechanisms of TGF-β dysregulation will likely reveal novel points of convergence between T GF-β and other pathways that can be specifically targeted for therapy, particularly in relation to transforming growth factor beta.
Abstract: Several mechanisms underlying tumor progression have remained elusive, particularly in relation to transforming growth factor beta (TGF-β). Although TGF-β initially inhibits epithelial growth, it appears to promote the progression of advanced tumors. Defects in normal TGF-β pathways partially explain this paradox, which can lead to a cascade of downstream events that drive multiple oncogenic pathways, manifesting as several key features of tumorigenesis (uncontrolled proliferation, loss of apoptosis, epithelial-to-mesenchymal transition, sustained angiogenesis, evasion of immune surveillance, and metastasis). Understanding the mechanisms of TGF-β dysregulation will likely reveal novel points of convergence between TGF-β and other pathways that can be specifically targeted for therapy.

Journal ArticleDOI
05 Dec 2014-Science
TL;DR: This work used microcrystals of photoactive yellow protein as a model system and obtained high-resolution, time-resolved difference electron density maps of excellent quality with strong features, which open the way to the study of reversible and nonreversible biological reactions on time scales as short as femtoseconds under conditions that maximize the extent of reaction initiation throughout the crystal.
Abstract: Serial femtosecond crystallography using ultrashort pulses from x-ray free electron lasers (XFELs) enables studies of the light-triggered dynamics of biomolecules. We used microcrystals of photoactive yellow protein (a bacterial blue light photoreceptor) as a model system and obtained high-resolution, time-resolved difference electron density maps of excellent quality with strong features; these allowed the determination of structures of reaction intermediates to a resolution of 1.6 angstroms. Our results open the way to the study of reversible and nonreversible biological reactions on time scales as short as femtoseconds under conditions that maximize the extent of reaction initiation throughout the crystal.

Journal ArticleDOI
TL;DR: Multilayered Si/RGO anode nanostructures, featuring alternating Si nanoparticle (NP) and RGO layers, good mechanical stability, and high electrical conductivity, allow Si NPs to easily expand between RGO layer, thereby leading to high reversible capacity.
Abstract: Multilayered Si/RGO anode nanostructures, featuring alternating Si nanoparticle (NP) and RGO layers, good mechanical stability, and high electrical conductivity, allow Si NPs to easily expand between RGO layers, thereby leading to high reversible capacity up to 2300 mAh g(-1) at 0.05 C (120 mA g(-1) ) and 87% capacity retention (up to 630 mAh g(-1) ) at 10 C after 152 cycles.

Journal ArticleDOI
Nathan O. Stitziel1, Hong-Hee Won2, Alanna C. Morrison3, Gina M. Peloso2, Ron Do2, Leslie A. Lange4, Pierre Fontanillas2, Namrata Gupta2, Stefano Duga, Anuj Goel5, Martin Farrall5, Danish Saleheen, Paola G. Ferrario6, Inke R. König6, Rosanna Asselta, Piera Angelica Merlini, Nicola Marziliano, Maria Francesca Notarangelo, Ursula M. Schick7, Paul L. Auer8, Themistocles L. Assimes9, Muredach P. Reilly10, Robert L. Wilensky10, Daniel J. Rader10, G. Kees Hovingh11, Thomas Meitinger12, Thorsten Kessler12, Adnan Kastrati12, Karl-Ludwig Laugwitz12, David S. Siscovick7, Jerome I. Rotter13, Stanley L. Hazen14, Russell P. Tracy15, Sharon Cresci1, John A. Spertus16, Rebecca D. Jackson17, Stephen M. Schwartz7, Pradeep Natarajan2, Jacy R Crosby3, Donna M. Muzny18, Christie M. Ballantyne18, Stephen S. Rich19, Christopher J. O'Donnell20, Gonçalo R. Abecasis21, Shamil R. Sunyaev2, Deborah A. Nickerson7, Julie E. Buring22, Paul M. Ridker22, Daniel I. Chasman22, Erin Austin23, Zi Ye23, Iftikhar J. Kullo23, Peter Weeke24, Christian M. Shaffer25, Lisa Bastarache25, Joshua C. Denny25, Dan M. Roden25, Colin N. A. Palmer26, Panos Deloukas27, Danyu Lin4, Zheng-Zheng Tang25, Jeanette Erdmann, Heribert Schunkert12, John Danesh28, Jaume Marrugat29, Roberto Elosua29, Diego Ardissino, Ruth McPherson30, Hugh Watkins5, Alexander P. Reiner7, James G. Wilson31, David Altshuler2, Richard A. Gibbs18, Eric S. Lander2, Eric Boerwinkle18, Stacey Gabriel2, Sekar Kathiresan2 
TL;DR: In this paper, the exons of the Niemann-Pick C1-like 1 (NPC1L1) protein were sequenced in 7364 patients with coronary heart disease and in 14,728 controls without such disease who were of European, African or South Asian ancestry.
Abstract: Ezetimibe lowers plasma levels of low-density lipoprotein (LDL) cholesterol by inhibiting the activity of the Niemann-Pick C1-like 1 (NPC1L1) protein. However, whether such inhibition reduces the risk of coronary heart disease is not known. Human mutations that inactivate a gene encoding a drug target can mimic the action of an inhibitory drug and thus can be used to infer potential effects of that drug.We sequenced the exons of NPC1L1 in 7364 patients with coronary heart disease and in 14,728 controls without such disease who were of European, African, or South Asian ancestry. We identified carriers of inactivating mutations (nonsense, splice-site, or frameshift mutations). In addition, we genotyped a specific inactivating mutation (p.Arg406X) in 22,590 patients with coronary heart disease and in 68,412 controls. We tested the association between the presence of an inactivating mutation and both plasma lipid levels and the risk of coronary heart disease.With sequencing, we identified 15 distinct NPC1L1 inactivating mutations; approximately 1 in every 650 persons was a heterozygous carrier for 1 of these mutations. Heterozygous carriers of NPC1L1 inactivating mutations had a mean LDL cholesterol level that was 12 mg per deciliter (0.31 mmol per liter) lower than that in noncarriers (P=0.04). Carrier status was associated with a relative reduction of 53% in the risk of coronary heart disease (odds ratio for carriers, 0.47; 95% confidence interval, 0.25 to 0.87; P=0.008). In total, only 11 of 29,954 patients with coronary heart disease had an inactivating mutation (carrier frequency, 0.04%) in contrast to 71 of 83,140 controls (carrier frequency, 0.09%).Naturally occurring mutations that disrupt NPC1L1 function were found to be associated with reduced plasma LDL cholesterol levels and a reduced risk of coronary heart disease. (Funded by the National Institutes of Health and others.).

Journal ArticleDOI
TL;DR: In this article, the importance of incorporating spatio-contextual information in remote sensing image classification was highlighted, including texture extraction, Markov random fields (MRFs), image segmentation and object-based image analysis.
Abstract: This paper reviewed major remote sensing image classification techniques, including pixel-wise, sub-pixel-wise, and object-based image classification methods, and highlighted the importance of incorporating spatio-contextual information in remote sensing image classification. Further, this paper grouped spatio-contextual analysis techniques into three major categories, including 1) texture extraction, 2) Markov random fields (MRFs) modeling, and 3) image segmentation and object-based image analysis. Finally, this paper argued the necessity of developing geographic information analysis models for spatial-contextual classifications using two case studies.

Journal ArticleDOI
TL;DR: Two interpolation methods to create a bridge between years are examined, one that relies only on areal weighting and another that also introduces population weights, which produce substantially different estimates for variables that involve population counts, but they have a high degree of convergence for variables defined as rates or averages.
Abstract: Differences in the reporting units of data from diverse sources and changes in units over time are common obstacles to analysis of areal data. We compare common approaches to this problem in the context of changes over time in the boundaries of U.S. census tracts. In every decennial census many tracts are split, consolidated, or changed in other ways from the previous boundaries to reflect population growth or decline. We examine two interpolation methods to create a bridge between years, one that relies only on areal weighting and another that also introduces population weights. Results demonstrate that these approaches produce substantially different estimates for variables that involve population counts, but they have a high degree of convergence for variables defined as rates or averages. Finally the paper describes the Longitudinal Tract Data Base (LTDB), through which we are making available public-use tools to implement these methods to create estimates within 2010 tract boundaries for any tract-level data (from the census or other sources) that are available for prior years as early as 1970.

Journal ArticleDOI
TL;DR: In this article, the authors present initial results of a deep near-IR spectroscopic survey covering the 15 fields of the Keck Baryonic Structure Survey (KBSS) using MOSFIRE.
Abstract: We present initial results of a deep near-IR spectroscopic survey covering the 15 fields of the Keck Baryonic Structure Survey (KBSS) using MOSFIRE on the Keck 1 telescope, focusing on a sample of 251 galaxies with redshifts 2.0< z < 2.6, star-formation rates 2 < SFR < 200 M_sun/yr, and stellar masses 8.6 < log(M*/M_sun) < 11.4, with high-quality spectra in both H- and K-band atmospheric windows. We show unambiguously that the locus of z~2.3 galaxies in the "BPT" nebular diagnostic diagram exhibits a disjoint, yet similarly tight, relationship between the ratios [NII]6585/Halpha and [OIII]/Hbeta as compared to local galaxies. Using photoionization models, we argue that the offset of the z~2.3 locus relative to z~ 0 is explained by a combination of harder ionizing radiation field, higher ionization parameter, and higher N/O at a given O/H than applies to most local galaxies, and that the position of a galaxy along the z~2.3 star-forming BPT locus is surprisingly insensitive to gas-phase oxygen abundance. The observed nebular emission line ratios are most easily reproduced by models in which the net ionizing radiation field resembles a blackbody with effective temperature T_eff = 50000-60000 K and N/O close to the solar value at all O/H. We critically assess the applicability of commonly-used strong line indices for estimating gas-phase metallicities, and consider the implications of the small intrinsic scatter in the empirical relationship between excitation-sensitive line indices and stellar mass (i.e., the "mass-metallicity" relation), at z~2.3.

Journal ArticleDOI
Gina M. Peloso1, Paul L. Auer2, Joshua C. Bis3, Arend Voorman3, Alanna C. Morrison4, Nathan O. Stitziel5, Jennifer A. Brody3, Sumeet A. Khetarpal6, Jacy R Crosby4, Myriam Fornage4, Aaron Isaacs7, Johanna Jakobsdottir, Mary F. Feitosa5, Gail Davies8, Jennifer E. Huffman8, Ani Manichaikul9, Brian W. Davis4, Kurt Lohman10, Aron Y. Joon4, Albert V. Smith11, Megan L. Grove4, Paolo Zanoni6, Valeska Redon6, Serkalem Demissie12, Kim Lawson4, Ulrike Peters13, Christopher S. Carlson13, Rebecca D. Jackson14, Kelli K. Ryckman15, Rachel H. Mackey16, Jennifer G. Robinson15, David S. Siscovick3, Pamela J. Schreiner17, Josyf C. Mychaleckyj9, James S. Pankow17, Albert Hofman7, André G. Uitterlinden7, Tamara B. Harris18, Kent D. Taylor19, Jeanette M. Stafford10, Lindsay M. Reynolds10, Riccardo E. Marioni8, Abbas Dehghan7, Oscar H. Franco7, Aniruddh P. Patel20, Yingchang Lu21, George Hindy22, Omri Gottesman21, Erwin P. Bottinger21, Olle Melander22, Marju Orho-Melander22, Ruth J. F. Loos21, Stefano Duga23, Piera Angelica Merlini, Martin Farrall24, Anuj Goel24, Rosanna Asselta23, Domenico Girelli25, Nicola Martinelli25, Svati H. Shah26, William E. Kraus26, Mingyao Li6, Daniel J. Rader6, Muredach P. Reilly6, Ruth McPherson27, Hugh Watkins28, Diego Ardissino, Qunyuan Zhang5, Judy Wang5, Michael Y. Tsai17, Herman A. Taylor29, Adolfo Correa29, Michael Griswold29, Leslie A. Lange30, John M. Starr8, Igor Rudan31, Gudny Eiriksdottir, Lenore J. Launer18, Jose M. Ordovas32, Daniel Levy18, Y.-D. Ida Chen19, Alexander P. Reiner3, Caroline Hayward8, Ozren Polasek31, Ian J. Deary8, Ingrid B. Borecki5, Yongmei Liu10, Vilmundur Gudnason11, James G. Wilson29, Cornelia M. van Duijn7, Charles Kooperberg13, Stephen S. Rich9, Bruce M. Psaty3, Jerome I. Rotter19, Christopher J. O'Donnell33, Kenneth Rice3, Eric Boerwinkle34, Sekar Kathiresan33, L. Adrienne Cupples12 
TL;DR: Although the "Exome Array" was used to genotype >200,000 low-frequency and rare coding sequence variants across the genome in 56,538 individuals, none of these four variants was associated with risk for CHD, suggesting that examples of low- frequencies with robust effects on both lipids and CHD will be limited.
Abstract: Low-frequency coding DNA sequence variants in the proprotein convertase subtilisin/kexin type 9 gene (PCSK9) lower plasma low-density lipoprotein cholesterol (LDL-C), protect against risk of coronary heart disease (CHD), and have prompted the development of a new class of therapeutics. It is uncertain whether the PCSK9 example represents a paradigm or an isolated exception. We used the "Exome Array" to genotype >200,000 low-frequency and rare coding sequence variants across the genome in 56,538 individuals (42,208 European ancestry [EA] and 14,330 African ancestry [AA]) and tested these variants for association with LDL-C, high-density lipoprotein cholesterol (HDL-C), and triglycerides. Although we did not identify new genes associated with LDL-C, we did identify four low-frequency (frequencies between 0.1% and 2%) variants (ANGPTL8 rs145464906 [c.361C>T; p.Gln121*], PAFAH1B2 rs186808413 [c.482C>T; p.Ser161Leu], COL18A1 rs114139997 [c.331G>A; p.Gly111Arg], and PCSK7 rs142953140 [c.1511G>A; p.Arg504His]) with large effects on HDL-C and/or triglycerides. None of these four variants was associated with risk for CHD, suggesting that examples of low-frequency coding variants with robust effects on both lipids and CHD will be limited.

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TL;DR: In this article, the authors presented a survey regarding published papers on why the microgrid is required, and what the components and control systems are which constitute the actual microgrid studies, and proposed a standard microgrid for better power quality and optimizing energy generation.

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Edward T. A. Mitchard1, Ted R. Feldpausch2, Ted R. Feldpausch3, Roel J. W. Brienen3, Gabriela Lopez-Gonzalez3, Abel Monteagudo, Timothy R. Baker3, Simon L. Lewis3, Simon L. Lewis4, Jon Lloyd5, Carlos A. Quesada6, Manuel Gloor3, Hans ter Steege7, Hans ter Steege8, Patrick Meir9, Patrick Meir1, Esteban Álvarez, Alejandro Araujo-Murakami10, Luiz E. O. C. Aragão2, Luiz E. O. C. Aragão11, Luzmila Arroyo10, Gerardo Aymard, Olaf Bánki12, Damien Bonal13, Sandra Brown, Foster Brown14, Foster Brown15, Carlos Cerón16, Victor Chama Moscoso, Jérôme Chave17, James A. Comiskey18, Fernando Cornejo19, Massiel Corrales Medina, Lola da Costa, Flávia R. C. Costa6, Anthony Di Fiore20, Tomas F. Domingues21, Terry L. Erwin22, Todd Frederickson23, Niro Higuchi6, Eurídice N. Honorio Coronado3, Timothy J. Killeen24, William F. Laurance25, Carolina Levis6, William E. Magnusson6, Beatriz Schwantes Marimon26, Ben Hur Marimon Junior26, Irina Mendoza Polo, Piyush Mishra27, Marcelo Trindade Nascimento, David A. Neill, Mario Percy Núñez Vargas28, Walter A. Palacios, Alexander Parada10, Guido Pardo Molina, Marielos Peña-Claros29, Nigel C. A. Pitman30, Carlos A. Peres31, Lourens Poorter29, Adriana Prieto32, Hirma Ramírez-Angulo33, Zorayda Restrepo Correa, Anand Roopsind34, Katherine H Roucoux3, Agustín Rudas32, Rafael de Paiva Salomão35, Juliana Schietti6, Marcos Silveira15, Priscila Souza6, Marc K. Steininger36, Juliana Stropp, John Terborgh30, Raquel Thomas37, Marisol Toledo10, Armando Torres-Lezama33, Tinde van Andel8, Geertje M. F. van der Heijden38, Geertje M. F. van der Heijden39, Ima Célia Guimarães Vieira35, Simone Aparecida Vieira40, Emilio Vilanova-Torre33, Vincent A. Vos, Ophelia Wang41, Charles E. Zartman6, Yadvinder Malhi42, Oliver L. Phillips3 
TL;DR: Pantropical biomass maps are widely used by governments and by projects aiming to reduce deforestation using carbon offsets, but may have significant regional biases and carbon accounting techniques must be revised to account for the known ecological variation in tree wood density and allometry.
Abstract: Aim The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Location Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/

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TL;DR: Researchers observed a significant overall average effect in the positive relationship between Facebook use and loneliness and point to measurements of Facebook use as well as measurements of loneliness (and its variations) as possible moderating features or sources of variability in the relationship.

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01 Jan 2014-Genetics
TL;DR: Results suggest that zebrafish in nature possess a WZ/ZZ sex-determination mechanism with a major determinant lying near the right telomere of chromosome 4 that was modified during domestication.
Abstract: Sex determination can be robustly genetic, strongly environmental, or genetic subject to environmental perturbation. The genetic basis of sex determination is unknown for zebrafish (Danio rerio), a model for development and human health. We used RAD-tag population genomics to identify sex-linked polymorphisms. After verifying this “RAD-sex” method on medaka (Oryzias latipes), we studied two domesticated zebrafish strains (AB and TU), two natural laboratory strains (WIK and EKW), and two recent isolates from nature (NA and CB). All four natural strains had a single sex-linked region at the right tip of chromosome 4, enabling sex genotyping by PCR. Genotypes for the single nucleotide polymorphism (SNP) with the strongest statistical association to sex suggested that wild zebrafish have WZ/ZZ sex chromosomes. In natural strains, “male genotypes” became males and some “female genotypes” also became males, suggesting that the environment or genetic background can cause female-to-male sex reversal. Surprisingly, TU and AB lacked detectable sex-linked loci. Phylogenomics rooted on D. nigrofasciatus verified that all strains are monophyletic. Because AB and TU branched as a monophyletic clade, we could not rule out shared loss of the wild sex locus in a common ancestor despite their independent domestication. Mitochondrial DNA sequences showed that investigated strains represent only one of the three identified zebrafish haplogroups. Results suggest that zebrafish in nature possess a WZ/ZZ sex-determination mechanism with a major determinant lying near the right telomere of chromosome 4 that was modified during domestication. Strains providing the zebrafish reference genome lack key components of the natural sex-determination system but may have evolved variant sex-determining mechanisms during two decades in laboratory culture.

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TL;DR: The heterogeneity of factors in shareholder activism, such as the firm, activist, and environmental characteristics that promote or inhibit activism, along with the breadth of activism's issues, methods, and processes, provide a plethora of theoretical and methodological opportunities and challenges for activism researchers as mentioned in this paper.

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TL;DR: In this article, the authors summarized the recent advances in the exploration of reaction mechanism of CO2 photoreduction with H2O in correlation with the TiO2 photocatalyst characteristics.
Abstract: Recently, there has been an increasing interest in the research of photocatalytic reduction of CO2 with H2O, an innovative way to simultaneously reduce the level of CO2 emissions and produce renewable and sustainable fuels. Titanium dioxide (TiO2) and modified TiO2 composites are the most widely used photocatalysts in this application; however, the reaction mechanism of CO2 photoreduction on TiO2 photocatalysts is still not very clear, and the reaction intermediates and product selectivity are not well understood. This review aims to summarize the recent advances in the exploration of reaction mechanism of CO2 photoreduction with H2O in correlation with the TiO2 photocatalyst characteristics. Discussions are provided in the following sections: (1) CO2 adsorption, activation and dissociation on TiO2 photocatalyst; (2) mechanism and approaches to enhance charge transfer from photocatalyst to reactants (i.e., CO2 and H2O); and (3) surface intermediates, reaction pathways, and product selectivity. In each section, the effects of material properties are discussed, including TiO2 crystal phases (e.g., anatase, rutile, brookite, or their mixtures), surface defects (e.g., oxygen vacancy and Ti^(3+)) and material modifications (e.g., incorporation of noble metal, metal oxide, and/or nonmetal species to TiO2). Finally, perspectives on future research directions and open issues to be addressed in CO2 photoreduction are outlined in this review paper.

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TL;DR: In this article, the authors report results from a 2010 survey designed to examine gender stereotypes, candidate evaluations, and voting behavior in U.S. House elections with women candidates running against men.
Abstract: Elections involving women candidates in the United States can offer unsettling examples of voter gender stereotypes, but research on women candidates provides little in the way of available data that allow us to link stereotypes to voter decision-making. This project reports results from a 2010 survey designed to examine gender stereotypes, candidate evaluations, and voting behavior in U.S. House elections with women candidates running against men. In general, stereotypes are not a central part of candidate evaluations or voting decisions, but the political party of the woman candidate can shape their role in candidate evaluations and vote choice.

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23 Jan 2014-Nature
TL;DR: Ransom et al. as mentioned in this paper reported precision timing and multi-wavelength observations of a unique object, the millisecond pulsar PSR J0337+1715, in orbit with two white dwarf companions.
Abstract: Precision timing and multiwavelength observations of a millisecond pulsar in a triple system show that the gravitational interactions between the bodies are strong; this allows the mass of each body to be determined accurately and means that the triple system will provide precise tests of the strong equivalence principle of general relativity. Millisecond pulsars act as high-precision celestial clocks, and astronomers can use them to test aspects of basic physics and astrophysics. A triple system containing a radio pulsar could provide measurements of the interior structures of the bodies and a test of theories of gravity, but the only previously known system with a millisecond pulsar shows only weak interactions. Scott Ransom et al. report precision timing and multiwavelength observations of a unique object, the millisecond pulsar PSR J0337+1715, in orbit with two white dwarf companions. Strong gravitational interactions are apparent in this triple system, making it possible to estimate the masses of the pulsar and the two white dwarf companions, as well as the inclinations of the orbits. The surprisingly coplanar and nearly circular orbits indicate a complex and exotic evolutionary past that differs from known stellar systems. Gravitationally bound three-body systems have been studied for hundreds of years1,2 and are common in our Galaxy3,4. They show complex orbital interactions, which can constrain the compositions, masses and interior structures of the bodies5 and test theories of gravity6, if sufficiently precise measurements are available. A triple system containing a radio pulsar could provide such measurements, but the only previously known such system, PSR B1620-26 (refs 7, 8; with a millisecond pulsar, a white dwarf, and a planetary-mass object in an orbit of several decades), shows only weak interactions. Here we report precision timing and multiwavelength observations of PSR J0337+1715, a millisecond pulsar in a hierarchical triple system with two other stars. Strong gravitational interactions are apparent and provide the masses of the pulsar (1.4378(13) , where is the solar mass and the parentheses contain the uncertainty in the final decimal places) and the two white dwarf companions (0.19751(15) and 0.4101(3) ), as well as the inclinations of the orbits (both about 39.2°). The unexpectedly coplanar and nearly circular orbits indicate a complex and exotic evolutionary past that differs from those of known stellar systems. The gravitational field of the outer white dwarf strongly accelerates the inner binary containing the neutron star, and the system will thus provide an ideal laboratory in which to test the strong equivalence principle of general relativity.

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TL;DR: Details are provided on how exposures to fluoxetine impact specific fish behaviors and reproduction and that the effects are dose dependent, indicating a dose dependent effect that triggered different responses at lower exposures versus higher exposures or differential impacts of dose depending on brain region.

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TL;DR: In this paper, the authors modeled the detection rate and sky localization accuracy for binary neutron star (BNS) mergers across the transition from Advanced LIGO and Virgo and found that for most BNS events, the rapid sky localization, available about a minute after a detection, is as accurate as the full parameter estimation.
Abstract: We anticipate the first direct detections of gravitational waves (GWs) with Advanced LIGO and Virgo later this decade. Though this groundbreaking technical achievement will be its own reward, a still greater prize could be observations of compact binary mergers in both gravitational and electromagnetic channels simultaneously. During Advanced LIGO and Virgo's first two years of operation, 2015 through 2016, we expect the global GW detector array to improve in sensitivity and livetime and expand from two to three detectors. We model the detection rate and the sky localization accuracy for binary neutron star (BNS) mergers across this transition. We have analyzed a large, astrophysically motivated source population using real-time detection and sky localization codes and higher-latency parameter estimation codes that have been expressly built for operation in the Advanced LIGO/Virgo era. We show that for most BNS events, the rapid sky localization, available about a minute after a detection, is as accurate as the full parameter estimation. We demonstrate that Advanced Virgo will play an important role in sky localization, even though it is anticipated to come online with only one-third as much sensitivity as the Advanced LIGO detectors. We find that the median 90% confidence region shrinks from ~500 deg^2 in 2015 to ~200 deg^2 in 2016. A few distinct scenarios for the first LIGO/Virgo detections emerge from our simulations.

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Zheng Ge1, Jian Li1, Li Xiao2, Yiran Tong2, Zhen He1 
TL;DR: In this article, the authors analyzed energy data in the sampled publications on continuously operated microbial fuel cells from the past 12 years and presented a rough picture of energy recovery in MFCs.
Abstract: Recovery of electrical energy is a key parameter for evaluating the performance of microbial fuel cells (MFCs). In this brief review, we analyze energy data in the sampled publications on continuously operated MFCs from the past 12 years and present a rough picture of energy recovery in MFCs. We observe that most MFCs produce a normalized energy recovery (NER) lower than 1.5 kWh/m3 or 1.0 kWh/kg of chemical oxygen demand (COD). The small MFCs (<100 mL) that produce high power densities do not exhibit any obvious advantage in NER compared with the larger MFCs. Pure substrates lead to better performance in both power and energy recovery. MFCs seem to be able to extract more energy (kilowatt hour per kilogram of COD) from low-strength substrates. The separator/membrane does not significantly affect NER. To establish an energy balance in MFCs and gain a better understanding of the MFC application niche, NER should be properly presented in future studies.