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Open AccessJournal ArticleDOI

Common variants at 19p13 are associated with susceptibility to ovarian cancer.

Kelly L. Bolton, +118 more
- 01 Oct 2010 - 
- Vol. 42, Iss: 10, pp 880-884
TLDR
In this article, a three-phase genome-wide association study of EOC survival in 8,951 individuals with EOC (cases) with available survival time data and a parallel association analysis of susceptibility showed evidence of association with survival.
Abstract
Epithelial ovarian cancer (EOC) is the leading cause of death from gynecological malignancy in the developed world, accounting for 4% of the deaths from cancer in women(1) We performed a three-phase genome-wide association study of EOC survival in 8,951 individuals with EOC (cases) with available survival time data and a parallel association analysis of EOC susceptibility Two SNPs at 19p1311, rs8170 and rs2363956, showed evidence of association with survival (overall P = 5 x 10(-4) and P = 6 x 10(-4), respectively), but they did not replicate in phase 3 However, the same two SNPs demonstrated genome-wide significance for risk of serous EOC (P = 3 x 10(-9) and P = 4 x 10(-11), respectively) Expression analysis of candidate genes at this locus in ovarian tumors supported a role for the BRCA1-interacting gene C19orf62, also known as MERIT40, which contains rs8170, in EOC development

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Citations
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Journal ArticleDOI

Epidemiology of ovarian cancer: a review.

TL;DR: The epidemiology provides clues on etiology, primary prevention, early detection, and possibly even therapeutic strategies for OC, including parity, oral contraceptive use, and lactation.
Journal ArticleDOI

GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer

Paul D.P. Pharoah, +176 more
- 01 Apr 2013 - 
TL;DR: An integrated molecular analysis of genes and regulatory regions at these loci provided evidence for functional mechanisms underlying susceptibility and implicated CHMP4C in the pathogenesis of ovarian cancer.
Journal ArticleDOI

Germline Mutations in the BRIP1, BARD1, PALB2, and NBN Genes in Women With Ovarian Cancer

TL;DR: Deleterious germline mutations in BRIP1 are associated with a moderate increase in EOC risk and have clinical implications for risk prediction and prevention approaches for ovarian cancer.
References
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Journal ArticleDOI

Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls

Paul Burton, +195 more
- 07 Jun 2007 - 
TL;DR: This study has demonstrated that careful use of a shared control group represents a safe and effective approach to GWA analyses of multiple disease phenotypes; generated a genome-wide genotype database for future studies of common diseases in the British population; and shown that, provided individuals with non-European ancestry are excluded, the extent of population stratification in theBritish population is generally modest.
Journal ArticleDOI

A new multipoint method for genome-wide association studies by imputation of genotypes

TL;DR: This work proposes a coherent analysis framework that treats the genome-wide association problem as one involving missing or uncertain genotypes, and proposes a model-based imputation method for inferring genotypes at observed or unobserved SNPs, leading to improved power over existing methods for multipoint association mapping.
Journal ArticleDOI

A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.

TL;DR: A statistical model based on the idea that, over short regions, haplotypes in a population tend to cluster into groups of similar haplotypes that allows cluster memberships to change continuously along the chromosome according to a hidden Markov model to capture the fact that recombination tends to be local in nature.
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