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Showing papers by "Pacific Northwest National Laboratory published in 2019"


Journal ArticleDOI
Evan Bolyen1, Jai Ram Rideout1, Matthew R. Dillon1, Nicholas A. Bokulich1, Christian C. Abnet2, Gabriel A. Al-Ghalith3, Harriet Alexander4, Harriet Alexander5, Eric J. Alm6, Manimozhiyan Arumugam7, Francesco Asnicar8, Yang Bai9, Jordan E. Bisanz10, Kyle Bittinger11, Asker Daniel Brejnrod7, Colin J. Brislawn12, C. Titus Brown4, Benjamin J. Callahan13, Andrés Mauricio Caraballo-Rodríguez14, John Chase1, Emily K. Cope1, Ricardo Silva14, Christian Diener15, Pieter C. Dorrestein14, Gavin M. Douglas16, Daniel M. Durall17, Claire Duvallet6, Christian F. Edwardson, Madeleine Ernst18, Madeleine Ernst14, Mehrbod Estaki17, Jennifer Fouquier19, Julia M. Gauglitz14, Sean M. Gibbons15, Sean M. Gibbons20, Deanna L. Gibson17, Antonio Gonzalez14, Kestrel Gorlick1, Jiarong Guo21, Benjamin Hillmann3, Susan Holmes22, Hannes Holste14, Curtis Huttenhower23, Curtis Huttenhower24, Gavin A. Huttley25, Stefan Janssen26, Alan K. Jarmusch14, Lingjing Jiang14, Benjamin D. Kaehler27, Benjamin D. Kaehler25, Kyo Bin Kang14, Kyo Bin Kang28, Christopher R. Keefe1, Paul Keim1, Scott T. Kelley29, Dan Knights3, Irina Koester14, Tomasz Kosciolek14, Jorden Kreps1, Morgan G. I. Langille16, Joslynn S. Lee30, Ruth E. Ley31, Ruth E. Ley32, Yong-Xin Liu, Erikka Loftfield2, Catherine A. Lozupone19, Massoud Maher14, Clarisse Marotz14, Bryan D Martin20, Daniel McDonald14, Lauren J. McIver24, Lauren J. McIver23, Alexey V. Melnik14, Jessica L. Metcalf33, Sydney C. Morgan17, Jamie Morton14, Ahmad Turan Naimey1, Jose A. Navas-Molina34, Jose A. Navas-Molina14, Louis-Félix Nothias14, Stephanie B. Orchanian, Talima Pearson1, Samuel L. Peoples20, Samuel L. Peoples35, Daniel Petras14, Mary L. Preuss36, Elmar Pruesse19, Lasse Buur Rasmussen7, Adam R. Rivers37, Michael S. Robeson38, Patrick Rosenthal36, Nicola Segata8, Michael Shaffer19, Arron Shiffer1, Rashmi Sinha2, Se Jin Song14, John R. Spear39, Austin D. Swafford, Luke R. Thompson40, Luke R. Thompson41, Pedro J. Torres29, Pauline Trinh20, Anupriya Tripathi14, Peter J. Turnbaugh10, Sabah Ul-Hasan42, Justin J. J. van der Hooft43, Fernando Vargas, Yoshiki Vázquez-Baeza14, Emily Vogtmann2, Max von Hippel44, William A. Walters32, Yunhu Wan2, Mingxun Wang14, Jonathan Warren45, Kyle C. Weber46, Kyle C. Weber37, Charles H. D. Williamson1, Amy D. Willis20, Zhenjiang Zech Xu14, Jesse R. Zaneveld20, Yilong Zhang47, Qiyun Zhu14, Rob Knight14, J. Gregory Caporaso1 
TL;DR: QIIME 2 development was primarily funded by NSF Awards 1565100 to J.G.C. and R.K.P. and partial support was also provided by the following: grants NIH U54CA143925 and U54MD012388.
Abstract: QIIME 2 development was primarily funded by NSF Awards 1565100 to J.G.C. and 1565057 to R.K. Partial support was also provided by the following: grants NIH U54CA143925 (J.G.C. and T.P.) and U54MD012388 (J.G.C. and T.P.); grants from the Alfred P. Sloan Foundation (J.G.C. and R.K.); ERCSTG project MetaPG (N.S.); the Strategic Priority Research Program of the Chinese Academy of Sciences QYZDB-SSW-SMC021 (Y.B.); the Australian National Health and Medical Research Council APP1085372 (G.A.H., J.G.C., Von Bing Yap and R.K.); the Natural Sciences and Engineering Research Council (NSERC) to D.L.G.; and the State of Arizona Technology and Research Initiative Fund (TRIF), administered by the Arizona Board of Regents, through Northern Arizona University. All NCI coauthors were supported by the Intramural Research Program of the National Cancer Institute. S.M.G. and C. Diener were supported by the Washington Research Foundation Distinguished Investigator Award.

8,821 citations


Journal ArticleDOI
TL;DR: Liu et al. as mentioned in this paper discuss crucial conditions needed to achieve a specific energy higher than 350 Wh kg−1, up to 500 Wh kg −1, for rechargeable Li metal batteries using high-nickel-content lithium nickel manganese cobalt oxides as cathode materials.
Abstract: State-of-the-art lithium (Li)-ion batteries are approaching their specific energy limits yet are challenged by the ever-increasing demand of today’s energy storage and power applications, especially for electric vehicles. Li metal is considered an ultimate anode material for future high-energy rechargeable batteries when combined with existing or emerging high-capacity cathode materials. However, much current research focuses on the battery materials level, and there have been very few accounts of cell design principles. Here we discuss crucial conditions needed to achieve a specific energy higher than 350 Wh kg−1, up to 500 Wh kg−1, for rechargeable Li metal batteries using high-nickel-content lithium nickel manganese cobalt oxides as cathode materials. We also provide an analysis of key factors such as cathode loading, electrolyte amount and Li foil thickness that impact the cell-level cycle life. Furthermore, we identify several important strategies to reduce electrolyte-Li reaction, protect Li surfaces and stabilize anode architectures for long-cycling high-specific-energy cells. Jun Liu and Battery500 Consortium colleagues contemplate the way forward towards high-energy and long-cycling practical batteries.

1,747 citations


Journal ArticleDOI
29 May 2019-Nature
TL;DR: It is demonstrated that periods of disease activity were also marked by increases in temporal variability, with characteristic taxonomic, functional, and biochemical shifts, and integrative analysis identified microbial, biochemical, and host factors central to this dysregulation.
Abstract: Inflammatory bowel diseases, which include Crohn's disease and ulcerative colitis, affect several million individuals worldwide. Crohn's disease and ulcerative colitis are complex diseases that are heterogeneous at the clinical, immunological, molecular, genetic, and microbial levels. Individual contributing factors have been the focus of extensive research. As part of the Integrative Human Microbiome Project (HMP2 or iHMP), we followed 132 subjects for one year each to generate integrated longitudinal molecular profiles of host and microbial activity during disease (up to 24 time points each; in total 2,965 stool, biopsy, and blood specimens). Here we present the results, which provide a comprehensive view of functional dysbiosis in the gut microbiome during inflammatory bowel disease activity. We demonstrate a characteristic increase in facultative anaerobes at the expense of obligate anaerobes, as well as molecular disruptions in microbial transcription (for example, among clostridia), metabolite pools (acylcarnitines, bile acids, and short-chain fatty acids), and levels of antibodies in host serum. Periods of disease activity were also marked by increases in temporal variability, with characteristic taxonomic, functional, and biochemical shifts. Finally, integrative analysis identified microbial, biochemical, and host factors central to this dysregulation. The study's infrastructure resources, results, and data, which are available through the Inflammatory Bowel Disease Multi'omics Database ( http://ibdmdb.org ), provide the most comprehensive description to date of host and microbial activities in inflammatory bowel diseases.

1,385 citations


Journal ArticleDOI
TL;DR: The Basis Set Exchange has been rewritten, utilizing modern software design and best practices, and the website updated to use the current generation of web development libraries.
Abstract: The Basis Set Exchange (BSE) has been a prominent fixture in the quantum chemistry community. First publicly available in 2007, it is recognized by both users and basis set creators as the de facto source for information related to basis sets. This popular resource has been rewritten, utilizing modern software design and best practices. The basis set data has been separated into a stand-alone library with an accessible API, and the Web site has been updated to use the current generation of web development libraries. The general layout and workflow of the Web site is preserved, while helpful features requested by the user community have been added. Overall, this design should increase adaptability and lend itself well into the future as a dependable resource for the computational chemistry community. This article will discuss the decision to rewrite the BSE, the new architecture and design, and the new features that have been added.

1,016 citations


Journal ArticleDOI
TL;DR: This Consensus Statement documents the central role and global importance of microorganisms in climate change biology and puts humanity on notice that the impact of climate change will depend heavily on responses of micro organisms, which are essential for achieving an environmentally sustainable future.
Abstract: In the Anthropocene, in which we now live, climate change is impacting most life on Earth. Microorganisms support the existence of all higher trophic life forms. To understand how humans and other life forms on Earth (including those we are yet to discover) can withstand anthropogenic climate change, it is vital to incorporate knowledge of the microbial 'unseen majority'. We must learn not just how microorganisms affect climate change (including production and consumption of greenhouse gases) but also how they will be affected by climate change and other human activities. This Consensus Statement documents the central role and global importance of microorganisms in climate change biology. It also puts humanity on notice that the impact of climate change will depend heavily on responses of microorganisms, which are essential for achieving an environmentally sustainable future.

963 citations


Journal ArticleDOI
TL;DR: The Community Land Model (CLM) is the land component of the Community Earth System Model (CESM) and is used in several global and regional modeling systems.
Abstract: The Community Land Model (CLM) is the land component of the Community Earth System Model (CESM) and is used in several global and regional modeling systems. In this paper, we introduce model developments included in CLM version 5 (CLM5), which is the default land component for CESM2. We assess an ensemble of simulations, including prescribed and prognostic vegetation state, multiple forcing data sets, and CLM4, CLM4.5, and CLM5, against a range of metrics including from the International Land Model Benchmarking (ILAMBv2) package. CLM5 includes new and updated processes and parameterizations: (1) dynamic land units, (2) updated parameterizations and structure for hydrology and snow (spatially explicit soil depth, dry surface layer, revised groundwater scheme, revised canopy interception and canopy snow processes, updated fresh snow density, simple firn model, and Model for Scale Adaptive River Transport), (3) plant hydraulics and hydraulic redistribution, (4) revised nitrogen cycling (flexible leaf stoichiometry, leaf N optimization for photosynthesis, and carbon costs for plant nitrogen uptake), (5) global crop model with six crop types and time‐evolving irrigated areas and fertilization rates, (6) updated urban building energy, (7) carbon isotopes, and (8) updated stomatal physiology. New optional features include demographically structured dynamic vegetation model (Functionally Assembled Terrestrial Ecosystem Simulator), ozone damage to plants, and fire trace gas emissions coupling to the atmosphere. Conclusive establishment of improvement or degradation of individual variables or metrics is challenged by forcing uncertainty, parametric uncertainty, and model structural complexity, but the multivariate metrics presented here suggest a general broad improvement from CLM4 to CLM5.

661 citations


Journal ArticleDOI
TL;DR: A comprehensive review of this field is presented by emphasizing the emerging issues including the predictive design and controllable construction of porous structures and doping configurations, mechanistic understanding from the model catalysts, integrated experimental and theoretical studies, and performance evaluation in full cells.
Abstract: Replacing precious platinum with earth-abundant materials for the oxygen reduction reaction (ORR) in fuel cells has been the objective worldwide for several decades. In the last 10 years, the fastest-growing branch in this area has been carbon-based metal-free ORR electrocatalysts. Great progress has been made in promoting the performance and understanding the underlying fundamentals. Here, a comprehensive review of this field is presented by emphasizing the emerging issues including the predictive design and controllable construction of porous structures and doping configurations, mechanistic understanding from the model catalysts, integrated experimental and theoretical studies, and performance evaluation in full cells. Centering on these topics, the most up-to-date results are presented, along with remarks and perspectives for the future development of carbon-based metal-free ORR electrocatalysts.

642 citations



Journal ArticleDOI
TL;DR: The Third Pole (TP) is experiencing rapid warming and is currently in its warmest period in the past 2,000 years as mentioned in this paper, and the latest development in multidisciplinary TP research is reviewed in this paper.
Abstract: The Third Pole (TP) is experiencing rapid warming and is currently in its warmest period in the past 2,000 years. This paper reviews the latest development in multidisciplinary TP research ...

530 citations


Journal ArticleDOI
TL;DR: In this article, a fluorinated orthoformate-based electrolyte was used to prevent dendritic Li formation and minimise Li loss and volumetric expansion in Li-metal batteries.
Abstract: Lithium (Li) pulverization and associated large volume expansion during cycling is one of the most critical barriers for the safe operation of Li-metal batteries. Here, we report an approach to minimize the Li pulverization using an electrolyte based on a fluorinated orthoformate solvent. The solid–electrolyte interphase (SEI) formed in this electrolyte clearly exhibits a monolithic feature, which is in sharp contrast with the widely reported mosaic- or multilayer-type SEIs that are not homogeneous and could lead to uneven Li stripping/plating and fast Li and electrolyte depletion over cycling. The highly homogeneous and amorphous SEI not only prevents dendritic Li formation, but also minimizes Li loss and volumetric expansion. Furthermore, this new electrolyte strongly suppresses the phase transformation of the LiNi0.8Co0.1Mn0.1O2 cathode (from layered structure to rock salt) and stabilizes its structure. Tests of high-voltage Li||NMC811 cells show long-term cycling stability and high rate capability, as well as reduced safety concerns. Parasitic reactions between Li metal and electrolytes need to be mitigated in Li-metal batteries. Here, the authors report the use of a fluorinated orthoformate-based electrolyte, leading to a monolithic solid–electrolyte interphase and subsequently a high-performance Li-metal battery.

512 citations


Journal ArticleDOI
TL;DR: This review summarizes the latest cutting-edge innovations of lignin chemical valorization with the focus on the aforementioned three key aspects.

Journal ArticleDOI
17 Jul 2019-Joule
TL;DR: Li et al. as mentioned in this paper proposed an ether-based localized high-concentration electrolyte that can greatly enhance the stability of a Ni-rich LiNi0.8Mn0.1Co 0.1O2 (NMC811) cathode.

Journal ArticleDOI
TL;DR: This survey paper aims to offer a detailed overview of existing distributed optimization algorithms and their applications in power systems, and focuses on the application of distributed optimization in the optimal coordination of distributed energy resources.

Journal ArticleDOI
02 May 2019-Cell
TL;DR: Comparative proteomic and phosphoproteomic analysis of paired tumor and normal adjacent tissues produced a catalog of colon cancer-associated proteins and phosphosites, including known and putative new biomarkers, drug targets, and cancer/testis antigens, which suggested glycolysis as a potential target to overcome the resistance of MSI-H tumors to immune checkpoint blockade.

Journal ArticleDOI
Jean-Christophe Golaz1, Peter M. Caldwell1, Luke Van Roekel2, Mark R. Petersen2, Qi Tang1, Jonathan Wolfe2, G. W. Abeshu3, Valentine G. Anantharaj4, Xylar Asay-Davis2, David C. Bader1, Sterling Baldwin1, Gautam Bisht5, Peter A. Bogenschutz1, Marcia L. Branstetter4, Michael A. Brunke6, Steven R. Brus2, Susannah M. Burrows7, Philip Cameron-Smith1, Aaron S. Donahue1, Michael Deakin8, Michael Deakin9, Richard C. Easter7, Katherine J. Evans4, Yan Feng10, Mark Flanner11, James G. Foucar9, Jeremy Fyke2, Brian M. Griffin12, Cecile Hannay13, Bryce E. Harrop7, Mattthew J. Hoffman2, Elizabeth Hunke2, Robert Jacob10, Douglas W. Jacobsen2, Nicole Jeffery2, Philip W. Jones2, Noel Keen5, Stephen A. Klein1, Vincent E. Larson12, L. Ruby Leung7, Hongyi Li3, Wuyin Lin14, William H. Lipscomb2, William H. Lipscomb13, Po-Lun Ma7, Salil Mahajan4, Mathew Maltrud2, Azamat Mametjanov10, Julie L. McClean15, Renata B. McCoy1, Richard Neale13, Stephen Price2, Yun Qian7, Philip J. Rasch7, J. E. Jack Reeves Eyre6, William J. Riley5, Todd D. Ringler16, Todd D. Ringler2, Andrew Roberts2, Erika Louise Roesler9, Andrew G. Salinger9, Zeshawn Shaheen1, Xiaoying Shi4, Balwinder Singh7, Jinyun Tang5, Mark A. Taylor9, Peter E. Thornton4, Adrian K. Turner2, Milena Veneziani2, Hui Wan7, Hailong Wang7, Shanlin Wang2, Dean N. Williams1, Phillip J. Wolfram2, Patrick H. Worley4, Shaocheng Xie1, Yang Yang7, Jin-Ho Yoon17, Mark D. Zelinka1, Charles S. Zender18, Xubin Zeng6, Chengzhu Zhang1, Kai Zhang7, Yuying Zhang1, X. Zheng1, Tian Zhou7, Qing Zhu5 
TL;DR: Energy Exascale Earth System Model (E3SM) project as mentioned in this paper is a project of the U.S. Department of Energy that aims to develop and validate the E3SM model.
Abstract: Energy Exascale Earth System Model (E3SM) project - U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research; Climate Model Development and Validation activity - Office of Biological and Environmental Research in the US Department of Energy Office of Science; Regional and Global Modeling and Analysis Program of the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research; National Research Foundation [NRF_2017R1A2b4007480]; Office of Science of the U.S. Department of Energy [DE-AC02-05CH11231]; DOE Office of Science User Facility [DE-AC05-00OR22725]; U.S. Department of Energy by Lawrence Livermore National Laboratory [DE-AC52-07NA27344]; DOE [DE-AC05-76RLO1830]; National Center for Atmospheric Research - National Science Foundation [1852977];[DE-SC0012778]

Journal ArticleDOI
29 Mar 2019-Science
TL;DR: The sources and impacts of natural nanomaterials, which are not created directly through human actions; incidental nanom material, which form unintentionally during human activities; and engineered nanomMaterials,Which are created for specific applications are reviewed.
Abstract: BACKGROUND Natural nanomaterials have always been abundant during Earth’s formation and throughout its evolution over the past 4.54 billion years. Incidental nanomaterials, which arise as a by-product from human activity, have become unintentionally abundant since the beginning of the Industrial Revolution. Nanomaterials can also be engineered to have unusual, tunable properties that can be used to improve products in applications from human health to electronics, and in energy, water, and food production. Engineered nanomaterials are very much a recent phenomenon, not yet a century old, and are just a small mass fraction of the natural and incidental varieties. As with natural and incidental nanomaterials, engineered nanomaterials can have both positive and negative consequences in our environment. Despite the ubiquity of nanomaterials on Earth, only in the past 20 years or so have their impacts on the Earth system been studied intensively. This is mostly due to a much better understanding of the distinct behavior of materials at the nanoscale and to multiple advances in analytic techniques. This progress continues to expand rapidly as it becomes clear that nanomaterials are relevant from molecular to planetary dimensions and that they operate from the shortest to the longest time scales over the entire Earth system. ADVANCES Nanomaterials can be defined as any organic, inorganic, or organometallic material that present chemical, physical, and/or electrical properties that change as a function of the size and shape of the material. This behavior is most often observed in the size range between 1 nm up to a few to several tens of nanometers in at least one dimension. These materials have very high proportions of surface atoms relative to interior ones. Also, they are often subject to property variation as a function of size owing to quantum confinement effects. Nanomaterial growth, dissolution or evaporation, surface reactivity, and aggregation states play key roles in their lifetime, behaviors, and local interactions in both natural and engineered environments, often with global consequences. It is now possible to recognize and identify critical roles played by nanomaterials in vital Earth system components, including direct human impact. For example, nanomaterial surfaces may have been responsible for promoting the self-assembly of protocells in the origin of life and in the early evolution of bacterial cell walls. Also, weathering reactions on the continents produce various bioavailable iron (oxy)hydroxide natural and incidental nanomaterials, which are transported to the oceans via riverine and atmospheric pathways and which influence ocean surface primary productivity and thus the global carbon cycle. A third example involves nanomaterials in the atmosphere that travel locally, regionally, and globally. When inhaled, the smallest nanoparticles can pass through the alveolar membranes of the lungs and directly enter the bloodstream. From there, they enter vital organs, including the brain, with possible deleterious consequences. OUTLOOK Earth system nanoscience requires a convergent approach that combines physical, biological, and social sciences, as well as engineering and economic disciplines. This convergence will drive developments for all types of intelligent and anticipatory conceptual models assisted by new analytical techniques and computational simulations. Ultimately, scientists must learn how to recognize key roles of natural, incidental, and engineered nanomaterials in the complex Earth system, so that this understanding can be included in models of Earth processes and Earth history, as well as in ethical considerations regarding their positive and negative effects on present and predicted future environmental and human health issues.

Journal ArticleDOI
TL;DR: A unified framework is proposed to clarify the important concepts related to DSE, forecasting-aided state estimation, trackingstate estimation, and static state estimation and provide future research needs and directions for the power engineering community.
Abstract: This paper summarizes the technical activities of the Task Force on Power System Dynamic State and Parameter Estimation. This Task Force was established by the IEEE Working Group on State Estimation Algorithms to investigate the added benefits of dynamic state and parameter estimation for the enhancement of the reliability, security, and resilience of electric power systems. The motivations and engineering values of dynamic state estimation (DSE) are discussed in detail. Then, a set of potential applications that will rely on DSE is presented and discussed. Furthermore, a unified framework is proposed to clarify the important concepts related to DSE, forecasting-aided state estimation, tracking state estimation, and static state estimation. An overview of the current progress in DSE and dynamic parameter estimation is provided. The paper also provides future research needs and directions for the power engineering community.

Journal ArticleDOI
TL;DR: Liu et al. as discussed by the authors developed a prototype Li metal pouch cell by integrating a Li metal anode, a LiNi0.6Mn0.2Co 0.2O2 cathode and a compatible electrolyte.
Abstract: Lithium metal anodes have attracted much attention as candidates for high-energy batteries, but there have been few reports of long cycling behaviour, and the degradation mechanism of realistic high-energy Li metal cells remains unclear. Here, we develop a prototypical 300 Wh kg−1 (1.0 Ah) pouch cell by integrating a Li metal anode, a LiNi0.6Mn0.2Co0.2O2 cathode and a compatible electrolyte. Under small uniform external pressure, the cell undergoes 200 cycles with 86% capacity retention and 83% energy retention. In the initial 50 cycles, flat Li foil converts into large Li particles that are entangled in the solid-electrolyte interphase, which leads to rapid volume expansion of the anode (cell thickening of 48%). As cycling continues, the external pressure helps the Li anode maintain good contact between the Li particles, which ensures a conducting percolation pathway for both ions and electrons, and thus the electrochemical reactions continue to occur. Accordingly, the solid Li particles evolve into a porous structure, which manifests in substantially reduced cell swelling by 19% in the subsequent 150 cycles. Much has been said about the high-energy, long-lasting potential of Li metal batteries, and yet little has been demonstrated at the cell scale. Here, Jun Liu and colleagues demonstrate a Li metal pouch cell with a 300 Wh kg−1 energy density and a 200-cycle lifetime.

Journal ArticleDOI
TL;DR: A self-smoothing lithium–carbon anode structure based on mesoporous carbon nanofibres, coupled with a lithium nickel–manganese–cobalt oxide cathode with a high nickel content, can lead to a cell-level energy density of 350–380 Wh kg−1 and a stable cycling life up to 200 cycles.
Abstract: Despite considerable efforts to stabilize lithium metal anode structures and prevent dendrite formation, achieving long cycling life in high-energy batteries under realistic conditions remains extremely difficult due to a combination of complex failure modes that involve accelerated anode degradation and the depletion of electrolyte and lithium metal. Here we report a self-smoothing lithium–carbon anode structure based on mesoporous carbon nanofibres, which, coupled with a lithium nickel–manganese–cobalt oxide cathode with a high nickel content, can lead to a cell-level energy density of 350–380 Wh kg−1 (counting all the active and inactive components) and a stable cycling life up to 200 cycles. These performances are achieved under the realistic conditions required for practical high-energy rechargeable lithium metal batteries: cathode loading ≥4.0 mAh cm−2, negative to positive electrode capacity ratio ≤2 and electrolyte weight to cathode capacity ratio ≤3 g Ah−1. The high stability of our anode is due to the amine functionalization and the mesoporous carbon structures that favour smooth lithium deposition. Metallic lithium wets a functionalized mesoporous carbon film to create a self-smoothing anode that, in conjunction with a standard lithium nickel–manganese–cobalt cathode, delivers long cycling life, 350 Wh kg−1 high-energy cells under realistic conditions.

Journal ArticleDOI
TL;DR: Of several possible degradation mechanisms, demetalation and carbon oxidation are found to be the most likely reasons for M-N-C catalysts/cathodes degradation.
Abstract: In recent years, significant progress has been achieved in the development of platinum group metal-free (PGM-free) oxygen reduction reaction (ORR) catalysts for proton exchange membrane (PEM) fuel cells. At the same time the limited durability of these catalysts remains a great challenge that needs to be addressed. This mini-review summarizes the recent progress in understanding the main causes of instability of PGM-free ORR catalysts in acidic environments, focusing on transition metal/nitrogen codoped systems (M-N-C catalysts, M: Fe, Co, Mn), particularly MNx moiety active sites. Of several possible degradation mechanisms, demetalation and carbon oxidation are found to be the most likely reasons for M-N-C catalysts/cathodes degradation.

Journal ArticleDOI
01 Apr 2019-Nature
TL;DR: The vibrational normal modes in a single molecule are imaged using tip-enhanced Raman spectromicroscopy performed in the atomistic near-field, and ångström-scale resolution is attained at subatomic separation between the tip atom and a molecule in the quantum tunnelling regime of plasmons.
Abstract: The internal vibrations of molecules drive the structural transformations that underpin chemistry and cellular function. While vibrational frequencies are measured by spectroscopy, the normal modes of motion are inferred through theory because their visualization would require microscopy with angstrom-scale spatial resolution—nearly three orders of magnitude smaller than the diffraction limit in optics1. Using a metallic tip to focus light and taking advantage of the surface-enhanced Raman effect2 to amplify the signal from individual molecules, tip-enhanced Raman spectromicroscopy (TER-SM)3,4 reaches the requisite sub-molecular spatial resolution5, confirming that light can be confined in picocavities6–10 and anticipating the direct visualization of molecular vibrations11–13. Here, by using TER-SM at the precisely controllable junction of a cryogenic ultrahigh-vacuum scanning tunnelling microscope14–16, we show that angstrom-scale resolution is attained at subatomic separation between the tip atom and a molecule in the quantum tunnelling regime of plasmons6,8,9,17. We record vibrational spectra within a single molecule, obtain images of normal modes and atomically parse the intramolecular charges and currents driven by vibrations. Our analysis provides a paradigm for optics in the atomistic near-field. The vibrational normal modes in a single molecule are imaged using tip-enhanced Raman spectromicroscopy performed in the atomistic near-field.

Journal ArticleDOI
TL;DR: This Perspective discussed the best practices for reporting lab-scale performance metrics in battery papers, and explained metrics such as anode energy density, voltage hysteresis, mass of non-active cell components and anode/cathode mass ratio.
Abstract: Batteries have shaped much of our modern world. This success is the result of intense collaboration between academia and industry over the past several decades, culminating with the advent of and improvements in rechargeable lithium-ion batteries. As applications become more demanding, there is the risk that stunted growth in the performance of commercial batteries will slow the adoption of important technologies such as electric vehicles. Yet the scientific literature includes many reports describing material designs with allegedly superior performance. A considerable gap needs to be filled if we wish these laboratory-based achievements to reach commercialization. In this Perspective, we discuss some of the most relevant testing parameters that are often overlooked in academic literature but are critical for practical applicability outside the laboratory. We explain metrics such as anode energy density, voltage hysteresis, mass of non-active cell components and anode/cathode mass ratio, and we make recommendations for future reporting. We hope that this Perspective, together with other similar guiding principles that have recently started to emerge, will aid the transition from lab-scale research to next-generation practical batteries. This Perspective discussed the best practices for reporting lab-scale performance metrics in battery papers.

Journal ArticleDOI
25 Nov 2019
TL;DR: It is demonstrated that machine learning and multiscale modeling can naturally complement each other to create robust predictive models that integrate the underlying physics to manage ill-posed problems and explore massive design spaces.
Abstract: Fueled by breakthrough technology developments, the biological, biomedical, and behavioral sciences are now collecting more data than ever before. There is a critical need for time- and cost-efficient strategies to analyze and interpret these data to advance human health. The recent rise of machine learning as a powerful technique to integrate multimodality, multifidelity data, and reveal correlations between intertwined phenomena presents a special opportunity in this regard. However, machine learning alone ignores the fundamental laws of physics and can result in ill-posed problems or non-physical solutions. Multiscale modeling is a successful strategy to integrate multiscale, multiphysics data and uncover mechanisms that explain the emergence of function. However, multiscale modeling alone often fails to efficiently combine large datasets from different sources and different levels of resolution. Here we demonstrate that machine learning and multiscale modeling can naturally complement each other to create robust predictive models that integrate the underlying physics to manage ill-posed problems and explore massive design spaces. We review the current literature, highlight applications and opportunities, address open questions, and discuss potential challenges and limitations in four overarching topical areas: ordinary differential equations, partial differential equations, data-driven approaches, and theory-driven approaches. Towards these goals, we leverage expertise in applied mathematics, computer science, computational biology, biophysics, biomechanics, engineering mechanics, experimentation, and medicine. Our multidisciplinary perspective suggests that integrating machine learning and multiscale modeling can provide new insights into disease mechanisms, help identify new targets and treatment strategies, and inform decision making for the benefit of human health.

Journal ArticleDOI
TL;DR: A body-centered cubic W-based refractory high entropy alloy with outstanding radiation resistance has been developed, grown as thin films showing a bimodal grain size distribution in the nanocrystalline and ultrafine regimes and a unique 4-nm lamella-like structure revealed by atom probe tomography.
Abstract: A body-centered cubic W-based refractory high entropy alloy with outstanding radiation resistance has been developed. The alloy was grown as thin films showing a bimodal grain size distribution in the nanocrystalline and ultrafine regimes and a unique 4-nm lamella-like structure revealed by atom probe tomography (APT). Transmission electron microscopy (TEM) and x-ray diffraction show certain black spots appearing after thermal annealing at elevated temperatures. TEM and APT analysis correlated the black spots with second-phase particles rich in Cr and V. No sign of irradiation-created dislocation loops, even after 8 dpa, was observed. Furthermore, nanomechanical testing shows a large hardness of 14 GPa in the as-deposited samples, with near negligible irradiation hardening. Theoretical modeling combining ab initio and Monte Carlo techniques predicts the formation of Cr- and V-rich second-phase particles and points at equal mobilities of point defects as the origin of the exceptional radiation tolerance.

Journal ArticleDOI
Evan Bolyen1, Jai Ram Rideout1, Matthew R. Dillon1, Nicholas A. Bokulich1, Christian C. Abnet2, Gabriel A. Al-Ghalith3, Harriet Alexander4, Harriet Alexander5, Eric J. Alm6, Manimozhiyan Arumugam7, Francesco Asnicar8, Yang Bai9, Jordan E. Bisanz10, Kyle Bittinger11, Asker Daniel Brejnrod7, Colin J. Brislawn12, C. Titus Brown4, Benjamin J. Callahan13, Andrés Mauricio Caraballo-Rodríguez14, John Chase1, Emily K. Cope1, Ricardo Silva14, Christian Diener15, Pieter C. Dorrestein14, Gavin M. Douglas16, Daniel M. Durall17, Claire Duvallet6, Christian F. Edwardson, Madeleine Ernst18, Madeleine Ernst14, Mehrbod Estaki17, Jennifer Fouquier19, Julia M. Gauglitz14, Sean M. Gibbons20, Sean M. Gibbons15, Deanna L. Gibson17, Antonio Gonzalez21, Kestrel Gorlick1, Jiarong Guo22, Benjamin Hillmann3, Susan Holmes23, Hannes Holste21, Curtis Huttenhower24, Curtis Huttenhower25, Gavin A. Huttley26, Stefan Janssen27, Alan K. Jarmusch14, Lingjing Jiang21, Benjamin D. Kaehler28, Benjamin D. Kaehler26, Kyo Bin Kang14, Kyo Bin Kang29, Christopher R. Keefe1, Paul Keim1, Scott T. Kelley30, Dan Knights3, Irina Koester14, Irina Koester21, Tomasz Kosciolek21, Jorden Kreps1, Morgan G. I. Langille16, Joslynn S. Lee31, Ruth E. Ley32, Ruth E. Ley33, Yong-Xin Liu, Erikka Loftfield2, Catherine A. Lozupone19, Massoud Maher21, Clarisse Marotz21, Bryan D Martin20, Daniel McDonald21, Lauren J. McIver24, Lauren J. McIver25, Alexey V. Melnik14, Jessica L. Metcalf34, Sydney C. Morgan17, Jamie Morton21, Ahmad Turan Naimey1, Jose A. Navas-Molina21, Jose A. Navas-Molina35, Louis-Félix Nothias14, Stephanie B. Orchanian, Talima Pearson1, Samuel L. Peoples36, Samuel L. Peoples20, Daniel Petras14, Mary L. Preuss37, Elmar Pruesse19, Lasse Buur Rasmussen7, Adam R. Rivers38, Michael S. Robeson39, Patrick Rosenthal37, Nicola Segata8, Michael Shaffer19, Arron Shiffer1, Rashmi Sinha2, Se Jin Song21, John R. Spear40, Austin D. Swafford, Luke R. Thompson41, Luke R. Thompson42, Pedro J. Torres30, Pauline Trinh20, Anupriya Tripathi14, Anupriya Tripathi21, Peter J. Turnbaugh10, Sabah Ul-Hasan43, Justin J. J. van der Hooft44, Fernando Vargas, Yoshiki Vázquez-Baeza21, Emily Vogtmann2, Max von Hippel45, William A. Walters32, Yunhu Wan2, Mingxun Wang14, Jonathan Warren46, Kyle C. Weber47, Kyle C. Weber38, Charles H. D. Williamson1, Amy D. Willis20, Zhenjiang Zech Xu21, Jesse R. Zaneveld20, Yilong Zhang48, Qiyun Zhu21, Rob Knight21, J. Gregory Caporaso1 
TL;DR: An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Abstract: In the version of this article initially published, some reference citations were incorrect. The three references to Jupyter Notebooks should have cited Kluyver et al. instead of Gonzalez et al. The reference to Qiita should have cited Gonzalez et al. instead of Schloss et al. The reference to mothur should have cited Schloss et al. instead of McMurdie & Holmes. The reference to phyloseq should have cited McMurdie & Holmes instead of Huber et al. The reference to Bioconductor should have cited Huber et al. instead of Franzosa et al. And the reference to the biobakery suite should have cited Franzosa et al. instead of Kluyver et al. The errors have been corrected in the HTML and PDF versions of the article.

Journal ArticleDOI
17 Apr 2019-Joule
TL;DR: In this article, the critical experimental parameters that determine the cycle number of coin cells were investigated to understand the performance variations reported in the literature, and a representative Li-metal pouch cell with specific energy of 300 Wh/kg was exemplified to provide an effective validation of electrode materials and accurate cell performance evaluations.

Journal ArticleDOI
25 Oct 2019-Science
TL;DR: A better fundamental understanding of the interfacial reactions during charging and discharging that dictate cell performance has developed and inspired a reevaluation of the use of Li metal anodes in rechargeable batteries.
Abstract: Studies of interfacial reactions and mass transport may allow safe use of lithium metal anodes Conventional rechargeable lithium (Li)–ion batteries generally use graphite as the anode, where Li ions are stored in the layered graphite. However, the use of Li metal as the anode is now being reconsidered. These next-generation battery technologies could potentially double the cell energy of conventional Li-ion batteries (1). Rechargeable Li metal batteries were commercialized more than four decades ago but were in use only briefly because of safety concerns (2). With the advancements of electrolyte (3, 4), electrode architecture (5), and characterization techniques (6) in recent years, a better fundamental understanding of the interfacial reactions during charging and discharging that dictate cell performance has developed and inspired a reevaluation of the use of Li metal anodes in rechargeable batteries.

Journal ArticleDOI
TL;DR: A guide to ion mobility mass spectrometry experiments, which covers both linear and nonlinear methods: what is measured, how the measurements are done, and how to report the results, including the uncertainties of mobility and collision cross section values.
Abstract: Here we present a guide to ion mobility mass spectrometry experiments, which covers both linear and nonlinear methods: what is measured, how the measurements are done, and how to report the results, including the uncertainties of mobility and collision cross section values. The guide aims to clarify some possibly confusing concepts, and the reporting recommendations should help researchers, authors and reviewers to contribute comprehensive reports, so that the ion mobility data can be reused more confidently. Starting from the concept of the definition of the measurand, we emphasize that (i) mobility values (K0) depend intrinsically on ion structure, the nature of the bath gas, temperature, and E/N; (ii) ion mobility does not measure molecular surfaces directly, but collision cross section (CCS) values are derived from mobility values using a physical model; (iii) methods relying on calibration are empirical (and thus may provide method‐dependent results) only if the gas nature, temperature or E/N cannot match those of the primary method. Our analysis highlights the urgency of a community effort toward establishing primary standards and reference materials for ion mobility, and provides recommendations to do so.

Journal ArticleDOI
TL;DR: A coupled redox dynamic that needs to be taken into account when designing high-capacity layered cathode materials for high-voltage lithium-ion batteries is unveiled.
Abstract: Surfaces, interfaces and grain boundaries are classically known to be sinks of defects generated within the bulk lattice. Here, we report an inverse case by which the defects generated at the particle surface are continuously pumped into the bulk lattice. We show that, during operation of a rechargeable battery, oxygen vacancies produced at the surfaces of lithium-rich layered cathode particles migrate towards the inside lattice. This process is associated with a high cutoff voltage at which an anionic redox process is activated. First-principle calculations reveal that triggering of this redox process leads to a sharp decrease of both the formation energy of oxygen vacancies and the migration barrier of oxidized oxide ions, therefore enabling the migration of oxygen vacancies into the bulk lattice of the cathode. This work unveils a coupled redox dynamic that needs to be taken into account when designing high-capacity layered cathode materials for high-voltage lithium-ion batteries.

Journal ArticleDOI
TL;DR: In this paper, the authors bring together hydrologists, critical zone scientists, and ESM developers to explore how hillslope structures may modulate ESM grid-level water, energy, and biogeochemical fluxes.
Abstract: Earth System Models (ESMs) are essential tools for understanding and predicting global change, but they cannot explicitly resolve hillslope‐scale terrain structures that fundamentally organize water, energy, and biogeochemical stores and fluxes at subgrid scales. Here we bring together hydrologists, Critical Zone scientists, and ESM developers, to explore how hillslope structures may modulate ESM grid‐level water, energy, and biogeochemical fluxes. In contrast to the one‐dimensional (1‐D), 2‐ to 3‐m deep, and free‐draining soil hydrology in most ESM land models, we hypothesize that 3‐D, lateral ridge‐to‐valley flow through shallow and deep paths and insolation contrasts between sunny and shady slopes are the top two globally quantifiable organizers of water and energy (and vegetation) within an ESM grid cell. We hypothesize that these two processes are likely to impact ESM predictions where (and when) water and/or energy are limiting. We further hypothesize that, if implemented in ESM land models, these processes will increase simulated continental water storage and residence time, buffering terrestrial ecosystems against seasonal and interannual droughts. We explore efficient ways to capture these mechanisms in ESMs and identify critical knowledge gaps preventing us from scaling up hillslope to global processes. One such gap is our extremely limited knowledge of the subsurface, where water is stored (supporting vegetation) and released to stream baseflow (supporting aquatic ecosystems). We conclude with a set of organizing hypotheses and a call for global syntheses activities and model experiments to assess the impact of hillslope hydrology on global change predictions.